Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0011509

Physical Location & Seq

Genomic Coordinates Forward (+)

80993814 .. 80998006

Gene Structure 4193 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00142920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1548 bp

ATGAGAATGAATATGAAGCGATCGAGGAAATCAATTTCTTGGGCTCCTGGAGTTAAACTTTGTCAGGTAAAGCTGTTCTCTTCTTTGGATTGTCCTATGGAAGTTGGCATGAAATATCAAGGTCATTTTCAACCAAAGACATCAAGTATGTTGCATTCCAGTTCTTTTGAATGCAATGATGGCCCGCCTGGGTTTGAAGTAGGTATCTCTGTGAAGCAATCTAAGCTGCAACATTTCCCCATCCCTCAGATTAGGTGGCAATGCCCTCCCAAGCTTATTATGAGTGACGGCTGGCCTGTAGCAGCTGGTGAGGAAAGTGAAGAAGCCAAGGCTCAAAAACTAAGAGAGATGAGAGTGCTTGAGGCAGTATATCCTCGCTTTTCTGCAATTCCACCTAGCCCCTCTGTTTCGTTGGATGTAGAACGTGAGCGTTATGATCATAGCCTCACTCCTTGTGTTCCCATCAATCCAATTGAAGAAGAGTCCCAAGAAGATCAAGAAGATCTAATACCAGTAAACACCACTGTAGTCTCTCAGCTACCAGGTTTTCCCCAAGGTCTGTTGGCATCTGGAACTGCAAATGTTTCTGAGTCCAACCCTCCTGGTTTTGAGCAAGTTCATGCACCAGGAAAGTTACCTAATCAAAGTGCTGATTTTACGGCCGTTGCTTCAGCTGCATTAACTGCAATGAAGAATAGCAGCGAGAAGGACAGTATGATCGATACTGATTTGCTTATTAAGATTCTTAACGATCCGAAAATGCTCCAGAAATTGATTAATGTACATGGACCACAAGCCAATACAGGAATTGCATCAGTGAATACACATACTGCACCAAGTTCAAAGACGGTAACTCCCTATGTTCCCTCATCCCTTTCAAACCCTGATACGCAAAGGACTCCAGGTGGTAACTTCCACGTGCCAGGTAAAGTGGGTACTACTCTGAATGCAATCCCTCTTCAACCAGATACTGTTCAATTATCTGGGTTAAAGCGACCTGCACCATCACCACCATTACCTTCCTCGTCCAGCCCTCAAGCTGACCATGTTCAATCTGGGTTAAAGCGACCTGCACCATCGCCACCATTACCTTCCTTGTCCAGCCCCCAAGCTGACCATGTTCTACTGCCCAGACTGCCAAATCAGGCACAACCCCCTTTAAGTGCATCGCCTGAACAGAACATGGTTCCCTTAGGATCTTTCCCAGTCCAGGAACCCGGAATTGTCAAGGACATGAACTACTATAAGAACCTCATTAGGCAACATGGAACAGAAAATAAAGAAATGCAGGACCCCATTTTGCTCAAAAATGGTAACAATCATAATCACTTGGTGGACTTGAAAATGTCTGTAAACTCTAATCCTGCAGAAATGAGGACCAAGAAACCGAAACATTGCATGTTTTTCAAAACTGCCAAGGGATGTCGTAAGGGTGCTAATTGTGAATACCTCCATGACAAGTCGTTAAATTGGCGAACTGGTATGGAGGCCCAAAGTGCCAAGAGAATGAAACTAAATGGGGTTAGTAAGGGGAGGAGTATGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

515

Amino Acids

56.28

Weight (kDa)

9.01

Isoelectric Point (pI)

53.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011509)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g11990 FvH4_1g11990 FvH4_1g11990 FvH4_1g11990 FvH4_1g11990
malus_domestica	MD02G1134000.v1.1 MD15G1247000.v1.1
prunus_persica	Prupe.7G166800_v2.0.a1
pyrus_communis	pycom02g10560 pycom15g21720
rosa_chinensis	RchiOBHm_Chr2g0099611
rosa_laevigata	RLG00000016896
rosa_multiflora	Rmu_sc0005120.1_g000013
rosa_roxburghii	Rroxscaffold_2G00142920
rosa_rugosa	Rorug02G0081500
rosa_samantha	Rh2AG131000 Rh2BG134200 Rh2CG135100 Rh2DG135600
rosa_wichuraiana	Rw2G010110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	1006, 1078
AciI	CCGC	1 cut(s)	185
AclWI	GGATC	2 cut(s)	746, 1204
AcoI	YGGCCR	1 cut(s)	660
AcuI	CTGAAG	1 cut(s)	654
AcvI	CACGTG	1 cut(s)	919
AdeI	CACNNNGTG	1 cut(s)	1333
AfaI	GTAC	2 cut(s)	783, 937
AfiI	CCNNNNNNNGG	1 cut(s)	1210
AjnI	CCWGG	8 cut(s)	46, 187, 541, 601, 625, 901, 922, 1209
AluBI	AGCT	8 cut(s)	73, 226, 274, 305, 538, 674, 1040, 1112
AluI	AGCT	8 cut(s)	73, 226, 274, 305, 538, 674, 1040, 1112
Alw26I	GTCTC	1 cut(s)	535
AlwI	GGATC	2 cut(s)	746, 1204
AlwNI	CAGNNNCTG	1 cut(s)	971
AoxI	GGCC	4 cut(s)	181, 293, 660, 1488
ApeKI	GCWGC	4 cut(s)	226, 302, 674, 699
AseI	ATTAAT	1 cut(s)	777
AspS9I	GGNCC	5 cut(s)	182, 788, 1291, 1377, 1489
AsuC2I	CCSGG	1 cut(s)	1218
AsuHPI	GGTGA	2 cut(s)	320, 999
AvaII	GGWCC	3 cut(s)	788, 1291, 1377
AxyI	CCTNAGG	1 cut(s)	1192
BanII	GRGCYC	1 cut(s)	46
BarI	GAAGNNNNNNTAC	2 cut(s)	492, 524
BbrPI	CACGTG	1 cut(s)	919
BbvI	GCAGC	4 cut(s)	213, 314, 661, 711
BccI	CCATC	5 cut(s)	173, 248, 470, 1012, 1084
BceAI	ACGGC	3 cut(s)	304, 647, 675
BciT130I	CCWGG	8 cut(s)	48, 189, 543, 603, 627, 903, 924, 1211
BclI	TGATCA	1 cut(s)	436
BcnI	CCSGG	1 cut(s)	1218
BcoDI	GTCTC	1 cut(s)	535
BfaI	CTAG	1 cut(s)	396
BfmI	CTRYAG	3 cut(s)	297, 525, 1365
BfuAI	ACCTGC	2 cut(s)	1006, 1078
BglII	AGATCT	1 cut(s)	502
BisI	GCNGC	4 cut(s)	227, 303, 675, 700
BlsI	GCNGC	4 cut(s)	228, 304, 676, 701
Bme1390I	CCNGG	9 cut(s)	48, 189, 543, 603, 627, 903, 924, 1211, 1218
Bme18I	GGWCC	3 cut(s)	788, 1291, 1377
BmgT120I	GGNCC	5 cut(s)	182, 788, 1291, 1377, 1489
BmiI	GGNNCC	4 cut(s)	45, 1188, 1215, 1293
BmrFI	CCNGG	9 cut(s)	48, 189, 543, 603, 627, 903, 924, 1211, 1218
BmrI	ACTGGG	1 cut(s)	1199
BmsI	GCATC	3 cut(s)	575, 821, 1175
BmuI	ACTGGG	1 cut(s)	1199
BpmI	CTGGAG	3 cut(s)	69, 749, 885
BpuEI	CTTGAG	2 cut(s)	380, 1020
BpuMI	CCSGG	1 cut(s)	1218
Bsa29I	ATCGAT	1 cut(s)	720
BsaAI	YACGTR	1 cut(s)	919
BsaJI	CCNNGG	4 cut(s)	188, 327, 553, 1416
BsaXI	ACNNNNNCTCC	2 cut(s)	838, 868
Bsc4I	CCNNNNNNNGG	1 cut(s)	1210
Bse1I	ACTGG	4 cut(s)	159, 512, 1205, 1483
Bse21I	CCTNAGG	1 cut(s)	1192
Bse3DI	GCAATG	4 cut(s)	181, 266, 693, 1393
BseBI	CCWGG	8 cut(s)	48, 189, 543, 603, 627, 903, 924, 1211
BseCI	ATCGAT	1 cut(s)	720
BseDI	CCNNGG	4 cut(s)	188, 327, 553, 1416
BseGI	GGATG	4 cut(s)	240, 421, 869, 1427
BseLI	CCNNNNNNNGG	1 cut(s)	1210
BseMI	GCAATG	4 cut(s)	181, 266, 693, 1393
BseMII	CTCAG	3 cut(s)	260, 548, 579
BseNI	ACTGG	4 cut(s)	159, 512, 1205, 1483
BseX3I	CGGCCG	1 cut(s)	660
BseXI	GCAGC	4 cut(s)	213, 314, 661, 711
BsgI	GTGCAG	3 cut(s)	816, 984, 1056
Bsh1285I	CGRYCG	2 cut(s)	23, 663
BshFI	GGCC	4 cut(s)	183, 295, 662, 1490
BshVI	ATCGAT	1 cut(s)	720
BsiEI	CGRYCG	2 cut(s)	23, 663
BsiSI	CCGG	1 cut(s)	1218
BslFI	GGGAC	1 cut(s)	469
BslI	CCNNNNNNNGG	1 cut(s)	1210
BsmAI	GTCTC	1 cut(s)	535
BsmFI	GGGAC	1 cut(s)	469
BsmI	GAATGC	3 cut(s)	154, 176, 952
BsnI	GGCC	4 cut(s)	183, 295, 662, 1490
Bsp1286I	GDGCHC	1 cut(s)	46
Bsp1407I	TGTACA	1 cut(s)	781
Bsp143I	GATC	7 cut(s)	20, 436, 493, 502, 717, 751, 1196
BspACI	CCGC	1 cut(s)	185
BspANI	GGCC	4 cut(s)	183, 295, 662, 1490
BspCNI	CTCAG	3 cut(s)	259, 547, 580
BspDI	ATCGAT	1 cut(s)	720
BspLI	GGNNCC	4 cut(s)	45, 1188, 1215, 1293
BspMAI	CTGCAG	1 cut(s)	1369
BspMI	ACCTGC	2 cut(s)	1006, 1078
BspPI	GGATC	2 cut(s)	746, 1204
BsrDI	GCAATG	4 cut(s)	181, 266, 693, 1393
BsrGI	TGTACA	1 cut(s)	781
BsrI	ACTGG	4 cut(s)	159, 512, 1205, 1483
BssECI	CCNNGG	4 cut(s)	188, 327, 553, 1416
BssMI	GATC	7 cut(s)	20, 436, 493, 502, 717, 751, 1196
BssT1I	CCWWGG	3 cut(s)	327, 553, 1416
Bst2UI	CCWGG	8 cut(s)	48, 189, 543, 603, 627, 903, 924, 1211
Bst4CI	ACNGT	4 cut(s)	526, 713, 850, 973
Bst6I	CTCTTC	3 cut(s)	85, 474, 963
BstAPI	GCANNNNNTGC	1 cut(s)	683
BstAUI	TGTACA	1 cut(s)	781
BstBAI	YACGTR	1 cut(s)	919
BstC8I	GCNNGC	2 cut(s)	185, 293
BstDEI	CTNAG	6 cut(s)	222, 246, 341, 534, 588, 1192
BstF5I	GGATG	4 cut(s)	240, 421, 869, 1427
BstKTI	GATC	7 cut(s)	23, 439, 496, 505, 720, 754, 1199
BstMAI	GTCTC	1 cut(s)	535
BstMBI	GATC	7 cut(s)	20, 436, 493, 502, 717, 751, 1196
BstMCI	CGRYCG	2 cut(s)	23, 663
BstMWI	GCNNNNNNNGC	6 cut(s)	180, 223, 674, 683, 1135, 1496
BstNI	CCWGG	8 cut(s)	48, 189, 543, 603, 627, 903, 924, 1211
BstNSI	RCATGY	1 cut(s)	1402
BstSCI	CCNGG	9 cut(s)	46, 187, 541, 601, 625, 901, 922, 1209, 1216
BstSFI	CTRYAG	3 cut(s)	297, 525, 1365
BstV1I	GCAGC	4 cut(s)	213, 314, 661, 711
BstX2I	RGATCY	2 cut(s)	502, 1196
BstYI	RGATCY	2 cut(s)	502, 1196
BstZI	CGGCCG	1 cut(s)	660
Bsu15I	ATCGAT	1 cut(s)	720
Bsu36I	CCTNAGG	1 cut(s)	1192
BsuRI	GGCC	4 cut(s)	183, 295, 662, 1490
BsuTUI	ATCGAT	1 cut(s)	720
BtgZI	GCGATG	2 cut(s)	1062, 1152
BtsCI	GGATG	4 cut(s)	240, 421, 869, 1427
BtsIMutI	CAGTG	2 cut(s)	522, 822
BveI	ACCTGC	2 cut(s)	1006, 1078
Cac8I	GCNNGC	2 cut(s)	185, 293
CaiI	CAGNNNCTG	1 cut(s)	971
Cfr13I	GGNCC	5 cut(s)	182, 788, 1291, 1377, 1489
ClaI	ATCGAT	1 cut(s)	720
CsiI	ACCWGGT	1 cut(s)	541
Csp6I	GTAC	2 cut(s)	782, 936
CviQI	GTAC	2 cut(s)	782, 936
DdeI	CTNAG	6 cut(s)	222, 246, 341, 534, 588, 1192
DpnI	GATC	7 cut(s)	22, 438, 495, 504, 719, 753, 1198
DpnII	GATC	7 cut(s)	20, 436, 493, 502, 717, 751, 1196
DraIII	CACNNNGTG	1 cut(s)	1333
EaeI	YGGCCR	1 cut(s)	660
EagI	CGGCCG	1 cut(s)	660
Eam1104I	CTCTTC	3 cut(s)	85, 474, 963
EarI	CTCTTC	3 cut(s)	85, 474, 963
EclXI	CGGCCG	1 cut(s)	660
Eco130I	CCWWGG	3 cut(s)	327, 553, 1416
Eco24I	GRGCYC	1 cut(s)	46
Eco47I	GGWCC	3 cut(s)	788, 1291, 1377
Eco52I	CGGCCG	1 cut(s)	660
Eco57I	CTGAAG	1 cut(s)	654
Eco72I	CACGTG	1 cut(s)	919
Eco81I	CCTNAGG	1 cut(s)	1192
EcoO109I	RGGNCCY	1 cut(s)	1291
EcoRII	CCWGG	8 cut(s)	46, 187, 541, 601, 625, 901, 922, 1209
EcoT14I	CCWWGG	3 cut(s)	327, 553, 1416
EcoT38I	GRGCYC	1 cut(s)	46
ErhI	CCWWGG	3 cut(s)	327, 553, 1416
FaqI	GGGAC	1 cut(s)	469
FauI	CCCGC	1 cut(s)	192
FbaI	TGATCA	1 cut(s)	436
Fnu4HI	GCNGC	4 cut(s)	227, 303, 675, 700
FokI	GGATG	4 cut(s)	227, 428, 856, 1434
FriOI	GRGCYC	1 cut(s)	46
Fsp4HI	GCNGC	4 cut(s)	227, 303, 675, 700
FspBI	CTAG	1 cut(s)	396
GluI	GCNGC	4 cut(s)	227, 303, 675, 700
GsuI	CTGGAG	3 cut(s)	69, 749, 885
HaeIII	GGCC	4 cut(s)	183, 295, 662, 1490
HapII	CCGG	1 cut(s)	1218
HindIII	AAGCTT	1 cut(s)	272
HinfI	GANTC	4 cut(s)	482, 590, 742, 898
HpaII	CCGG	1 cut(s)	1218
HphI	GGTGA	2 cut(s)	320, 999
Hpy166II	GTNNAC	3 cut(s)	517, 1336, 1354
Hpy188I	TCNGA	4 cut(s)	249, 589, 756, 945
Hpy188III	TCNNGA	3 cut(s)	497, 570, 766
Hpy8I	GTNNAC	3 cut(s)	517, 1336, 1354
HpyAV	CCTTC	3 cut(s)	700, 1029, 1101
HpyCH4III	ACNGT	4 cut(s)	526, 713, 850, 973
HpyCH4IV	ACGT	2 cut(s)	424, 918
HpyF10VI	GCNNNNNNNGC	6 cut(s)	180, 223, 674, 683, 1135, 1496
HpyF3I	CTNAG	6 cut(s)	222, 246, 341, 534, 588, 1192
HpySE526I	ACGT	2 cut(s)	424, 918
Ksp22I	TGATCA	1 cut(s)	436
Kzo9I	GATC	7 cut(s)	20, 436, 493, 502, 717, 751, 1196
LmnI	GCTCC	2 cut(s)	49, 768
Lsp1109I	GCAGC	4 cut(s)	213, 314, 661, 711
LweI	GCATC	3 cut(s)	575, 821, 1175
MabI	ACCWGGT	1 cut(s)	541
MaeI	CTAG	1 cut(s)	396
MaeII	ACGT	2 cut(s)	424, 918
MaeIII	GTNAC	5 cut(s)	284, 633, 850, 908, 1313
MalI	GATC	7 cut(s)	22, 438, 495, 504, 719, 753, 1198
MboI	GATC	7 cut(s)	20, 436, 493, 502, 717, 751, 1196
MboII	GAAGA	8 cut(s)	72, 332, 488, 491, 503, 512, 703, 950
MfeI	CAATTG	1 cut(s)	471
MflI	RGATCY	2 cut(s)	502, 1196
MhlI	GDGCHC	1 cut(s)	46
MluCI	AATT	9 cut(s)	33, 387, 471, 770, 807, 977, 1221, 1438, 1468
MlyI	GAGTC	3 cut(s)	491, 599, 892
MmeI	TCCRAC	2 cut(s)	393, 618
MseI	TTAA	9 cut(s)	54, 680, 738, 747, 777, 989, 1061, 1160, 1466
MspA1I	CMGCKG	2 cut(s)	305, 674
MspI	CCGG	1 cut(s)	1218
MspR9I	CCNGG	9 cut(s)	48, 189, 543, 603, 627, 903, 924, 1211, 1218
MunI	CAATTG	1 cut(s)	471
Mva1269I	GAATGC	3 cut(s)	154, 176, 952
MvaI	CCWGG	8 cut(s)	48, 189, 543, 603, 627, 903, 924, 1211
MwoI	GCNNNNNNNGC	6 cut(s)	180, 223, 674, 683, 1135, 1496
NciI	CCSGG	1 cut(s)	1218
NdeII	GATC	7 cut(s)	20, 436, 493, 502, 717, 751, 1196
NlaIV	GGNNCC	4 cut(s)	45, 1188, 1215, 1293
NmuCI	GTSAC	1 cut(s)	284
NspI	RCATGY	1 cut(s)	1402
PctI	GAATGC	3 cut(s)	154, 176, 952
PfeI	GAWTC	1 cut(s)	742
PfoI	TCCNGGA	2 cut(s)	46, 1209
PkrI	GCNGC	4 cut(s)	228, 304, 676, 701
Ple19I	CGATCG	1 cut(s)	23
PleI	GAGTC	3 cut(s)	490, 598, 892
PmaCI	CACGTG	1 cut(s)	919
PmlI	CACGTG	1 cut(s)	919
PpsI	GAGTC	3 cut(s)	490, 598, 892
Ppu21I	YACGTR	1 cut(s)	919
PpuMI	RGGWCCY	1 cut(s)	1291
PshBI	ATTAAT	1 cut(s)	777
Psp5II	RGGWCCY	1 cut(s)	1291
Psp6I	CCWGG	8 cut(s)	46, 187, 541, 601, 625, 901, 922, 1209
PspCI	CACGTG	1 cut(s)	919
PspGI	CCWGG	8 cut(s)	46, 187, 541, 601, 625, 901, 922, 1209
PspN4I	GGNNCC	4 cut(s)	45, 1188, 1215, 1293
PspPI	GGNCC	5 cut(s)	182, 788, 1291, 1377, 1489
PspPPI	RGGWCCY	1 cut(s)	1291
PstI	CTGCAG	1 cut(s)	1369
PstNI	CAGNNNCTG	1 cut(s)	971
PsuI	RGATCY	2 cut(s)	502, 1196
PvuI	CGATCG	1 cut(s)	23
PvuII	CAGCTG	2 cut(s)	305, 674
RsaI	GTAC	2 cut(s)	783, 937
RsaNI	GTAC	2 cut(s)	782, 936
SaqAI	TTAA	9 cut(s)	54, 680, 738, 747, 777, 989, 1061, 1160, 1466
SatI	GCNGC	4 cut(s)	227, 303, 675, 700
Sau3AI	GATC	7 cut(s)	20, 436, 493, 502, 717, 751, 1196
Sau96I	GGNCC	5 cut(s)	182, 788, 1291, 1377, 1489
SchI	GAGTC	3 cut(s)	491, 599, 892
ScrFI	CCNGG	9 cut(s)	48, 189, 543, 603, 627, 903, 924, 1211, 1218
SduI	GDGCHC	1 cut(s)	46
SexAI	ACCWGGT	1 cut(s)	541
SfaNI	GCATC	3 cut(s)	575, 821, 1175
SfcI	CTRYAG	3 cut(s)	297, 525, 1365
SinI	GGWCC	3 cut(s)	788, 1291, 1377
SmlI	CTYRAG	2 cut(s)	359, 1035
SmoI	CTYRAG	2 cut(s)	359, 1035
Sse9I	AATT	9 cut(s)	33, 387, 471, 770, 807, 977, 1221, 1438, 1468
SsiI	CCGC	1 cut(s)	185
SspMI	CTAG	1 cut(s)	396
StyD4I	CCNGG	9 cut(s)	46, 187, 541, 601, 625, 901, 922, 1209, 1216
StyI	CCWWGG	3 cut(s)	327, 553, 1416
TaaI	ACNGT	4 cut(s)	526, 713, 850, 973
TaiI	ACGT	2 cut(s)	427, 921
TaqI	TCGA	2 cut(s)	23, 720
TasI	AATT	9 cut(s)	33, 387, 471, 770, 807, 977, 1221, 1438, 1468
TatI	WGTACW	1 cut(s)	781
TfiI	GAWTC	1 cut(s)	742
Tru1I	TTAA	9 cut(s)	54, 680, 738, 747, 777, 989, 1061, 1160, 1466
Tru9I	TTAA	9 cut(s)	54, 680, 738, 747, 777, 989, 1061, 1160, 1466
TscAI	CASTG	2 cut(s)	529, 822
TseFI	GTSAC	1 cut(s)	284
TseI	GCWGC	4 cut(s)	226, 302, 674, 699
Tsp45I	GTSAC	1 cut(s)	284
TspDTI	ATGAA	7 cut(s)	23, 29, 125, 608, 704, 1250, 1523
TspRI	CASTG	2 cut(s)	529, 822
VpaK11BI	GGWCC	3 cut(s)	788, 1291, 1377
VspI	ATTAAT	1 cut(s)	777
XceI	RCATGY	1 cut(s)	1402
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1052
XspI	CTAG	1 cut(s)	396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.