Prupe.7G166800_v2.0.a1

zinc finger CCCH domain-containing protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
Physical Location & Seq
Forward (+)
17040336 .. 17044985
4650 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G166800.1

Sequence Viewer

Length: 1524 bp
ATGAGAATGAATATGAAGCGGTCGAGGATTTCAAACTCAGTTTCTTGGGCTGCCGGAGCCAATCTTTGTCAGGTGAAGCTGTTCTCTTCTGAGGATTGTCCTGTTAAAGTTGGCCTGAAATGTCAAGATCATCTTCAAGCAAAGGCATCAAGTATGTTGAATTCAATTCCTGCGGAAAATGATTTCCCCCCTGGATTTGAAGGCAGTTTTTCTGTGGGCAAGTCAAAAGTGGAACTTCCCCACATCCCGAGTATTCAATGGAAACGCCCTTCCAAGTTTGTCATAAGTCCCACCTGGGAAGTAGCAGCTGGCGAGGAAAGTGAGGATGCCAAGGCTCAAAAATCGAGAGAGATGAGAGTGCTTGAAGCAGTTTATCCTCGTTTTTCTGCAATTCCCCCTAACCCCTCAGTTTCTTTGGATGTAGAGGGCGAGCATTATGATGATAGCCTCACTCCTTTTGTTCCTGATACTCCAATTGAAGAAGAGTCCCCAGATTTACTTGATCTGGAAACTCCAGTGAATACCAATGTAGGTTGTCAACCACCAGTCTTGCACCAAGGTCTGTCGGCATCTGGGAAATCAAATGCTTCTAAATGTAACTCTCCTGGTTTGCAGCAACTCGCCAGTGATCAACCTGTACTAGGAAACTTATTTGATCTTAACGCGGACGTGACTGCTGCTGCTTCAGCTGCATTGACTGCAATCATGAAAAGCACTGAGAAGGGAAGTTTGGTCGATACTGGTTTGCTCATTAAAATTCTTAGTGACCCAAAAATGATCCAGAAATTGAGTAATGAATCCGGACCACAGGCCAATGCAGGACTTGCACCCAGGCCAAAGACATTAGTTCCATCAATTCCCTCATCTCATCCAAAATCTGATATGCAAGGGACTGCTGCAGGTGGAAACTACTGCCCTATGCCAGGTACATTGGGAATTGCTTTGAATACAATCCCTCTTCAGCCAAATAATGTTCAACTATCCGGGTTGAATCGACAAACACCACCGTCTCCTTTGCCCAGCTCCAAATCCAACTTCTTTATGTTGCCTAGCCTGCCAAATCAAAACCAAGCACAACCCCCGCAACCCCCTTTAAGAGCAATGACTCAACCGAACAGACCTCCATTACCGCCATTCTCTTCAAGTGCAATGAATGATCCAAATAGAGCTCCCTTACCACCATTCCCAGCCAACGAAGCCGGACATGTGAAGGATGTGAACTACTTTAAGAACCTCATTATGCAACATGGAGTTGAAATCCAGGACCCATTTATTGCACAAAATGGTAACAATCATAATCACTTGACAGACTTGAAAATGGTTCAAAACTTTAAACCAGGAGAAACGAAACCTTGCAAGAATCGCAAACCTTGCTTGTACTTTAAAAGCTCTAGGGGATGCCGTAATGGAGTTAATTGCACTTTCCAGCATGATATGTCATGCCAGTGGCCGACTGGCAGCATCATGGAGGCCCATAGTACCAAGAGAATGAAACTAACTGGGTTTAATACTGGAAGGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

508

Amino Acids

54.89

Weight (kDa)

8.54

Isoelectric Point (pI)

44.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 890
Acc36I ACCTGC 1 cut(s) 890
AccII CGCG 1 cut(s) 665
AccIII TCCGGA 1 cut(s) 800
AciI CCGC 5 cut(s) 19, 173, 665, 1082, 1130
AclWI GGATC 2 cut(s) 772, 1151
AcoI YGGCCR 1 cut(s) 1448
AcsI RAATTY 2 cut(s) 160, 756
AcuI CTGAAG 2 cut(s) 669, 944
AfaI GTAC 4 cut(s) 639, 928, 1379, 1480
AfiI CCNNNNNNNGG 2 cut(s) 641, 923
AflIII ACRYGT 1 cut(s) 1204
AjiI CACGTC 1 cut(s) 670
AjnI CCWGG 7 cut(s) 190, 293, 604, 830, 922, 1260, 1336
AjuI GAANNNNNNNTTGG 4 cut(s) 713, 745, 1019, 1051
AluBI AGCT 6 cut(s) 79, 308, 689, 1023, 1169, 1389
AluI AGCT 6 cut(s) 79, 308, 689, 1023, 1169, 1389
Alw21I GWGCWC 1 cut(s) 1171
Alw26I GTCTC 1 cut(s) 1014
AlwI GGATC 2 cut(s) 772, 1151
Ama87I CYCGRG 1 cut(s) 247
Aor13HI TCCGGA 1 cut(s) 800
AoxI GGCC 5 cut(s) 112, 810, 833, 1448, 1470
ApeKI GCWGC 8 cut(s) 50, 305, 613, 677, 680, 689, 896, 1458
ApoI RAATTY 2 cut(s) 160, 756
Asp700I GAANNNNTTC 1 cut(s) 80
AspS9I GGNCC 3 cut(s) 803, 1264, 1471
AsuC2I CCSGG 1 cut(s) 985
AsuHPI GGTGA 1 cut(s) 85
AvaI CYCGRG 1 cut(s) 247
AvaII GGWCC 2 cut(s) 803, 1264
BanII GRGCYC 1 cut(s) 1171
Bbv12I GWGCWC 1 cut(s) 1171
BbvI GCAGC 8 cut(s) 37, 317, 625, 664, 667, 676, 883, 1470
BccI CCATC 1 cut(s) 859
BceAI ACGGC 1 cut(s) 1386
BciT130I CCWGG 7 cut(s) 192, 295, 606, 832, 924, 1262, 1338
BclI TGATCA 1 cut(s) 628
BcnI CCSGG 1 cut(s) 985
BcoDI GTCTC 1 cut(s) 1014
BfaI CTAG 3 cut(s) 641, 1050, 1392
BfmI CTRYAG 1 cut(s) 897
BfuAI ACCTGC 1 cut(s) 890
BisI GCNGC 8 cut(s) 51, 306, 614, 678, 681, 690, 897, 1459
BlsI GCNGC 8 cut(s) 52, 307, 615, 679, 682, 691, 898, 1460
Bme1390I CCNGG 8 cut(s) 192, 295, 606, 832, 924, 985, 1262, 1338
Bme18I GGWCC 2 cut(s) 803, 1264
BmeT110I CYCGRG 1 cut(s) 247
BmgBI CACGTC 1 cut(s) 670
BmgT120I GGNCC 3 cut(s) 803, 1264, 1471
BmiI GGNNCC 2 cut(s) 58, 1266
BmrFI CCNGG 8 cut(s) 192, 295, 606, 832, 924, 985, 1262, 1338
BmrI ACTGGG 1 cut(s) 1509
BmsI GCATC 5 cut(s) 155, 316, 578, 1388, 1470
BmuI ACTGGG 1 cut(s) 1509
BpmI CTGGAG 1 cut(s) 498
BpuMI CCSGG 1 cut(s) 985
BsaJI CCNNGG 5 cut(s) 190, 294, 330, 556, 830
BsaWI WCCGGW 1 cut(s) 800
Bsc4I CCNNNNNNNGG 2 cut(s) 641, 923
Bse1I ACTGG 8 cut(s) 515, 545, 624, 745, 1444, 1459, 1504, 1516
Bse3DI GCAATG 2 cut(s) 1107, 1155
BseAI TCCGGA 1 cut(s) 800
BseBI CCWGG 7 cut(s) 192, 295, 606, 832, 924, 1262, 1338
BseDI CCNNGG 5 cut(s) 190, 294, 330, 556, 830
BseGI GGATG 7 cut(s) 243, 331, 424, 868, 1219, 1403, 1524
BseLI CCNNNNNNNGG 2 cut(s) 641, 923
BseMI GCAATG 2 cut(s) 1107, 1155
BseMII CTCAG 4 cut(s) 51, 81, 420, 708
BseNI ACTGG 8 cut(s) 515, 545, 624, 745, 1444, 1459, 1504, 1516
BseXI GCAGC 8 cut(s) 37, 317, 625, 664, 667, 676, 883, 1470
BseYI CCCAGC 2 cut(s) 1019, 1186
Bsh1236I CGCG 1 cut(s) 665
Bsh1285I CGRYCG 1 cut(s) 23
BshFI GGCC 5 cut(s) 114, 812, 835, 1450, 1472
BsiEI CGRYCG 1 cut(s) 23
BsiHKAI GWGCWC 1 cut(s) 1171
BsiHKCI CYCGRG 1 cut(s) 247
BsiSI CCGG 4 cut(s) 54, 801, 984, 1200
BslFI GGGAC 3 cut(s) 273, 472, 904
BslI CCNNNNNNNGG 2 cut(s) 641, 923
BsmAI GTCTC 1 cut(s) 1014
BsmBI CGTCTC 1 cut(s) 1014
BsmFI GGGAC 3 cut(s) 273, 472, 904
BsnI GGCC 5 cut(s) 114, 812, 835, 1450, 1472
BsoBI CYCGRG 1 cut(s) 247
Bsp1286I GDGCHC 1 cut(s) 1171
Bsp13I TCCGGA 1 cut(s) 800
Bsp143I GATC 6 cut(s) 127, 502, 628, 655, 777, 1156
BspACI CCGC 5 cut(s) 19, 173, 665, 1082, 1130
BspANI GGCC 5 cut(s) 114, 812, 835, 1450, 1472
BspCNI CTCAG 4 cut(s) 50, 82, 419, 709
BspEI TCCGGA 1 cut(s) 800
BspFNI CGCG 1 cut(s) 665
BspHI TCATGA 1 cut(s) 705
BspLI GGNNCC 2 cut(s) 58, 1266
BspMAI CTGCAG 1 cut(s) 901
BspMI ACCTGC 1 cut(s) 890
BspPI GGATC 2 cut(s) 772, 1151
BsrDI GCAATG 2 cut(s) 1107, 1155
BsrI ACTGG 8 cut(s) 515, 545, 624, 745, 1444, 1459, 1504, 1516
BssECI CCNNGG 5 cut(s) 190, 294, 330, 556, 830
BssMI GATC 6 cut(s) 127, 502, 628, 655, 777, 1156
BssT1I CCWWGG 2 cut(s) 330, 556
Bst2UI CCWGG 7 cut(s) 192, 295, 606, 832, 924, 1262, 1338
Bst4CI ACNGT 1 cut(s) 1008
Bst6I CTCTTC 4 cut(s) 91, 477, 963, 1144
BstAPI GCANNNNNTGC 3 cut(s) 698, 824, 1371
BstC8I GCNNGC 3 cut(s) 310, 431, 1055
BstDEI CTNAG 5 cut(s) 37, 90, 406, 717, 761
BstENI CCTNNNNNAGG 2 cut(s) 639, 921
BstF5I GGATG 7 cut(s) 243, 331, 424, 868, 1219, 1403, 1524
BstFNI CGCG 1 cut(s) 665
BstKTI GATC 6 cut(s) 130, 505, 631, 658, 780, 1159
BstMAI GTCTC 1 cut(s) 1014
BstMBI GATC 6 cut(s) 127, 502, 628, 655, 777, 1156
BstMCI CGRYCG 1 cut(s) 23
BstMWI GCNNNNNNNGC 9 cut(s) 56, 686, 689, 698, 824, 1054, 1196, 1362, 1371
BstNI CCWGG 7 cut(s) 192, 295, 606, 832, 924, 1262, 1338
BstNSI RCATGY 1 cut(s) 1208
BstSCI CCNGG 8 cut(s) 190, 293, 604, 830, 922, 983, 1260, 1336
BstSFI CTRYAG 1 cut(s) 897
BstUI CGCG 1 cut(s) 665
BstV1I GCAGC 8 cut(s) 37, 317, 625, 664, 667, 676, 883, 1470
BsuRI GGCC 5 cut(s) 114, 812, 835, 1450, 1472
BtrI CACGTC 1 cut(s) 670
BtsCI GGATG 7 cut(s) 243, 331, 424, 868, 1219, 1403, 1524
BtsIMutI CAGTG 4 cut(s) 522, 631, 714, 1451
BveI ACCTGC 1 cut(s) 890
Cac8I GCNNGC 3 cut(s) 310, 431, 1055
CciI TCATGA 1 cut(s) 705
Cfr13I GGNCC 3 cut(s) 803, 1264, 1471
Csp6I GTAC 4 cut(s) 638, 927, 1378, 1479
CspCI CAANNNNNGTGG 2 cut(s) 531, 566
CviAII CATG 6 cut(s) 706, 1205, 1247, 1430, 1440, 1465
CviQI GTAC 4 cut(s) 638, 927, 1378, 1479
DdeI CTNAG 5 cut(s) 37, 90, 406, 717, 761
DpnI GATC 6 cut(s) 129, 504, 630, 657, 779, 1158
DpnII GATC 6 cut(s) 127, 502, 628, 655, 777, 1156
DraI TTTAAA 2 cut(s) 1333, 1384
EaeI YGGCCR 1 cut(s) 1448
Eam1104I CTCTTC 4 cut(s) 91, 477, 963, 1144
EarI CTCTTC 4 cut(s) 91, 477, 963, 1144
Ecl136II GAGCTC 1 cut(s) 1169
Eco130I CCWWGG 2 cut(s) 330, 556
Eco24I GRGCYC 1 cut(s) 1171
Eco47I GGWCC 2 cut(s) 803, 1264
Eco53kI GAGCTC 1 cut(s) 1169
Eco57I CTGAAG 2 cut(s) 669, 944
Eco88I CYCGRG 1 cut(s) 247
EcoICRI GAGCTC 1 cut(s) 1169
EcoNI CCTNNNNNAGG 2 cut(s) 639, 921
EcoO109I RGGNCCY 1 cut(s) 1264
EcoRI GAATTC 1 cut(s) 160
EcoRII CCWGG 7 cut(s) 190, 293, 604, 830, 922, 1260, 1336
EcoT14I CCWWGG 2 cut(s) 330, 556
EcoT38I GRGCYC 1 cut(s) 1171
ErhI CCWWGG 2 cut(s) 330, 556
Esp3I CGTCTC 1 cut(s) 1014
FaeI CATG 6 cut(s) 709, 1208, 1250, 1433, 1443, 1468
FalI AAGNNNNNCTT 4 cut(s) 117, 149, 219, 251
FaqI GGGAC 3 cut(s) 273, 472, 904
FatI CATG 6 cut(s) 705, 1204, 1246, 1429, 1439, 1464
FauI CCCGC 1 cut(s) 1089
FbaI TGATCA 1 cut(s) 628
Fnu4HI GCNGC 8 cut(s) 51, 306, 614, 678, 681, 690, 897, 1459
FokI GGATG 6 cut(s) 230, 338, 431, 855, 1226, 1410
FriOI GRGCYC 1 cut(s) 1171
Fsp4HI GCNGC 8 cut(s) 51, 306, 614, 678, 681, 690, 897, 1459
FspBI CTAG 3 cut(s) 641, 1050, 1392
GluI GCNGC 8 cut(s) 51, 306, 614, 678, 681, 690, 897, 1459
GsaI CCCAGC 2 cut(s) 1023, 1190
GsuI CTGGAG 1 cut(s) 498
HaeIII GGCC 5 cut(s) 114, 812, 835, 1450, 1472
HapII CCGG 4 cut(s) 54, 801, 984, 1200
Hin1II CATG 6 cut(s) 709, 1208, 1250, 1433, 1443, 1468
HincII GTYRAC 1 cut(s) 539
HindII GTYRAC 1 cut(s) 539
HinfI GANTC 5 cut(s) 485, 797, 991, 1105, 1360
HpaII CCGG 4 cut(s) 54, 801, 984, 1200
HphI GGTGA 1 cut(s) 85
Hpy166II GTNNAC 2 cut(s) 539, 1219
Hpy188I TCNGA 2 cut(s) 91, 880
Hpy188III TCNNGA 8 cut(s) 125, 247, 345, 464, 506, 706, 781, 801
Hpy8I GTNNAC 2 cut(s) 539, 1219
HpyAV CCTTC 5 cut(s) 194, 279, 715, 1204, 1509
HpyCH4III ACNGT 1 cut(s) 1008
HpyCH4IV ACGT 1 cut(s) 669
HpyF10VI GCNNNNNNNGC 9 cut(s) 56, 686, 689, 698, 824, 1054, 1196, 1362, 1371
HpyF3I CTNAG 5 cut(s) 37, 90, 406, 717, 761
HpySE526I ACGT 1 cut(s) 669
Hsp92II CATG 6 cut(s) 709, 1208, 1250, 1433, 1443, 1468
Kpn2I TCCGGA 1 cut(s) 800
Ksp22I TGATCA 1 cut(s) 628
Kzo9I GATC 6 cut(s) 127, 502, 628, 655, 777, 1156
LmnI GCTCC 3 cut(s) 56, 1028, 1174
Lsp1109I GCAGC 8 cut(s) 37, 317, 625, 664, 667, 676, 883, 1470
LweI GCATC 5 cut(s) 155, 316, 578, 1388, 1470
MaeI CTAG 3 cut(s) 641, 1050, 1392
MaeII ACGT 1 cut(s) 669
MaeIII GTNAC 4 cut(s) 596, 670, 764, 1286
MalI GATC 6 cut(s) 129, 504, 630, 657, 779, 1158
MboI GATC 6 cut(s) 127, 502, 628, 655, 777, 1156
MboII GAAGA 6 cut(s) 78, 125, 491, 494, 950, 1131
MfeI CAATTG 1 cut(s) 474
MhlI GDGCHC 1 cut(s) 1171
MluCI AATT 9 cut(s) 160, 165, 390, 474, 756, 785, 855, 936, 1414
MlyI GAGTC 2 cut(s) 494, 1099
MmeI TCCRAC 1 cut(s) 1056
MroI TCCGGA 1 cut(s) 800
MroXI GAANNNNTTC 1 cut(s) 80
MseI TTAA 9 cut(s) 105, 660, 753, 1094, 1227, 1332, 1383, 1413, 1506
MslI CAYNNNNRTG 2 cut(s) 438, 1444
MspA1I CMGCKG 2 cut(s) 308, 689
MspI CCGG 4 cut(s) 54, 801, 984, 1200
MspR9I CCNGG 8 cut(s) 192, 295, 606, 832, 924, 985, 1262, 1338
MunI CAATTG 1 cut(s) 474
MvaI CCWGG 7 cut(s) 192, 295, 606, 832, 924, 1262, 1338
MvnI CGCG 1 cut(s) 665
MwoI GCNNNNNNNGC 9 cut(s) 56, 686, 689, 698, 824, 1054, 1196, 1362, 1371
NciI CCSGG 1 cut(s) 985
NdeII GATC 6 cut(s) 127, 502, 628, 655, 777, 1156
NlaIII CATG 6 cut(s) 709, 1208, 1250, 1433, 1443, 1468
NlaIV GGNNCC 2 cut(s) 58, 1266
NmuCI GTSAC 2 cut(s) 670, 764
NspI RCATGY 1 cut(s) 1208
PagI TCATGA 1 cut(s) 705
PaqCI CACCTGC 1 cut(s) 890
PciI ACATGT 1 cut(s) 1204
PdmI GAANNNNTTC 1 cut(s) 80
PfeI GAWTC 3 cut(s) 797, 991, 1360
PfoI TCCNGGA 1 cut(s) 1260
PkrI GCNGC 8 cut(s) 52, 307, 615, 679, 682, 691, 898, 1460
PleI GAGTC 2 cut(s) 493, 1099
PpsI GAGTC 2 cut(s) 493, 1099
PpuMI RGGWCCY 1 cut(s) 1264
PscI ACATGT 1 cut(s) 1204
Psp124BI GAGCTC 1 cut(s) 1171
Psp5II RGGWCCY 1 cut(s) 1264
Psp6I CCWGG 7 cut(s) 190, 293, 604, 830, 922, 1260, 1336
PspFI CCCAGC 2 cut(s) 1019, 1186
PspGI CCWGG 7 cut(s) 190, 293, 604, 830, 922, 1260, 1336
PspN4I GGNNCC 2 cut(s) 58, 1266
PspPI GGNCC 3 cut(s) 803, 1264, 1471
PspPPI RGGWCCY 1 cut(s) 1264
PstI CTGCAG 1 cut(s) 901
PvuII CAGCTG 2 cut(s) 308, 689
RsaI GTAC 4 cut(s) 639, 928, 1379, 1480
RsaNI GTAC 4 cut(s) 638, 927, 1378, 1479
RseI CAYNNNNRTG 2 cut(s) 438, 1444
SacI GAGCTC 1 cut(s) 1171
SaqAI TTAA 9 cut(s) 105, 660, 753, 1094, 1227, 1332, 1383, 1413, 1506
SatI GCNGC 8 cut(s) 51, 306, 614, 678, 681, 690, 897, 1459
Sau3AI GATC 6 cut(s) 127, 502, 628, 655, 777, 1156
Sau96I GGNCC 3 cut(s) 803, 1264, 1471
SchI GAGTC 2 cut(s) 494, 1099
ScrFI CCNGG 8 cut(s) 192, 295, 606, 832, 924, 985, 1262, 1338
SduI GDGCHC 1 cut(s) 1171
SfaNI GCATC 5 cut(s) 155, 316, 578, 1388, 1470
SfcI CTRYAG 1 cut(s) 897
SinI GGWCC 2 cut(s) 803, 1264
SmiMI CAYNNNNRTG 2 cut(s) 438, 1444
Sse9I AATT 9 cut(s) 160, 165, 390, 474, 756, 785, 855, 936, 1414
SsiI CCGC 5 cut(s) 19, 173, 665, 1082, 1130
SspMI CTAG 3 cut(s) 641, 1050, 1392
SstI GAGCTC 1 cut(s) 1171
StyD4I CCNGG 8 cut(s) 190, 293, 604, 830, 922, 983, 1260, 1336
StyI CCWWGG 2 cut(s) 330, 556
TaaI ACNGT 1 cut(s) 1008
TaiI ACGT 1 cut(s) 672
TaqI TCGA 4 cut(s) 23, 344, 735, 994
TasI AATT 9 cut(s) 160, 165, 390, 474, 756, 785, 855, 936, 1414
TatI WGTACW 2 cut(s) 637, 1377
TfiI GAWTC 3 cut(s) 797, 991, 1360
Tru1I TTAA 9 cut(s) 105, 660, 753, 1094, 1227, 1332, 1383, 1413, 1506
Tru9I TTAA 9 cut(s) 105, 660, 753, 1094, 1227, 1332, 1383, 1413, 1506
TscAI CASTG 4 cut(s) 522, 631, 721, 1451
TseFI GTSAC 2 cut(s) 670, 764
TseI GCWGC 8 cut(s) 50, 305, 613, 677, 680, 689, 896, 1458
Tsp45I GTSAC 2 cut(s) 670, 764
TspDTI ATGAA 6 cut(s) 23, 29, 722, 810, 1166, 1505
TspRI CASTG 4 cut(s) 522, 631, 721, 1451
VpaK11BI GGWCC 2 cut(s) 803, 1264
XagI CCTNNNNNAGG 2 cut(s) 639, 921
XapI RAATTY 2 cut(s) 160, 756
XceI RCATGY 1 cut(s) 1208
XcmI CCANNNNNNNNNTGG 1 cut(s) 1451
XmnI GAANNNNTTC 1 cut(s) 80
XspI CTAG 3 cut(s) 641, 1050, 1392
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.