Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0011509

Physical Location & Seq

Genomic Coordinates Reverse (-)

11392913 .. 11397590

Gene Structure 4678 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG135600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

ATGTGTGACGGCTGGCGTGTAGCAGCTGGTGAGGAAAGTGAAGAAGCCAAGGCTCAAAAACTAAGAGAGATGAGAGTGCTTGAGGCAGTATATCCTCGTTTTTCTGCAATTCCACCTAGCCCCTCTGTTTCTTTGGACGTAGAAAGTGAGCATTATGATCATAGCCTCACTCCTTGTGTTCCCATCAATCCAATTGAAGAAGAGTCCCAAGAAGATCAAGAAGATCTAACACCAGTAAACACCACTGTAGTCTCTCAGCTACCAGGTTTTCCCCAAGGTCTGTTGGCATCTGGAACGGCAAATGTTTCTCAGTCCAACCCTCCTGGTTTGGAGCAAGTACATGCACCAGGAAAGTTACCTAATCAAAGTGCTGATTTTACGGCCATTGCTTCAGCTGCATTAACTGCAATGAAGAATAGCAGCGAGAAGGAAAGTAGGATCGATACTGATTTGCTTATTAAGATTCTTAACGATCCGAAAATGCTCCAGAAATTGATTAATGTACATGGACCACAAGCCAATACAGGAATTGCATCAGTGAATACACATACTGCACCAAGTTCAAAGACGGTAACTCCCTATGTTCCCTCATCCCTTTCAAACTCTGATATGCAAAGGACTCCAGATGGTAACTTCCACATGCCAGGTAAAGTGGGTACTACTTTGAATGCAATCCCTCTTCAACCAGATACTGTTCAATTATCTGGGTTAAAGCGACCTGCACCATCACCACCATTACCTTCCTCGTCCAGCCCTCAAGCTGACCATGTTCTACTACCCAGACTGCCAAATCAGGCACAACCCCCATTAAGTGCATCGCCTGAACAGAACATGGTTCCCGTAGGATCTTTCCCAGCCCAGGAACCCGGAATTGTCAAGGACATGAACTACTATAAGAACCTCATTAGGCAACATGGAACAGAAAATAAAGAAATGCAGGACCCCATTTTGCTCAAAAATGGTAACAATCATAATCACTTGGTGGACTTGAAAATGTCTGTAAACTCTAATCCAGCAGAAATGAGGGCCAAGAAATCGAAACATTGCATGTTTTTCAAAACTGCCAAGGGATGTCGTAAGGGTGCTAATTGTGAATACCTCCATGACATGTCGTTAAATTGGCGAACTGGAATGGAGGCCCAAAGTGCCAAGAGAATGAAACTAAATGGGGTTAATAAGGGGAGGAGTATGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

398

Amino Acids

43.3

Weight (kDa)

6.87

Isoelectric Point (pI)

54.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011509)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g11990 FvH4_1g11990 FvH4_1g11990 FvH4_1g11990 FvH4_1g11990
malus_domestica	MD02G1134000.v1.1 MD15G1247000.v1.1
prunus_persica	Prupe.7G166800_v2.0.a1
pyrus_communis	pycom02g10560 pycom15g21720
rosa_chinensis	RchiOBHm_Chr2g0099611
rosa_laevigata	RLG00000016896
rosa_multiflora	Rmu_sc0005120.1_g000013
rosa_roxburghii	Rroxscaffold_2G00142920
rosa_rugosa	Rorug02G0081500
rosa_samantha	Rh2AG131000 Rh2BG134200 Rh2CG135100 Rh2DG135600
rosa_wichuraiana	Rw2G010110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	727
AclWI	GGATC	3 cut(s)	446, 467, 853
AcoI	YGGCCR	1 cut(s)	381
AcuI	CTGAAG	1 cut(s)	375
AdeI	CACNNNGTG	1 cut(s)	982
AfaI	GTAC	3 cut(s)	339, 504, 658
AfiI	CCNNNNNNNGG	1 cut(s)	859
AflIII	ACRYGT	1 cut(s)	1107
AgsI	TTSAA	8 cut(s)	197, 564, 600, 667, 683, 698, 991, 1057
AjnI	CCWGG	5 cut(s)	262, 322, 346, 643, 858
AluBI	AGCT	4 cut(s)	26, 259, 395, 761
AluI	AGCT	4 cut(s)	26, 259, 395, 761
Alw26I	GTCTC	1 cut(s)	256
AlwI	GGATC	3 cut(s)	446, 467, 853
AlwNI	CAGNNNCTG	1 cut(s)	692
AoxI	GGCC	3 cut(s)	381, 1026, 1137
ApeKI	GCWGC	3 cut(s)	23, 395, 420
AseI	ATTAAT	1 cut(s)	498
AspS9I	GGNCC	4 cut(s)	509, 940, 1026, 1138
AsuC2I	CCSGG	1 cut(s)	867
AsuHPI	GGTGA	2 cut(s)	41, 720
AvaII	GGWCC	2 cut(s)	509, 940
BbvI	GCAGC	3 cut(s)	35, 382, 432
BccI	CCATC	3 cut(s)	191, 620, 733
BceAI	ACGGC	3 cut(s)	25, 312, 396
BciT130I	CCWGG	5 cut(s)	264, 324, 348, 645, 860
BclI	TGATCA	1 cut(s)	157
BcnI	CCSGG	1 cut(s)	867
BcoDI	GTCTC	1 cut(s)	256
BfaI	CTAG	1 cut(s)	117
BfmI	CTRYAG	1 cut(s)	246
BfuAI	ACCTGC	1 cut(s)	727
BglII	AGATCT	1 cut(s)	223
BisI	GCNGC	3 cut(s)	24, 396, 421
BlsI	GCNGC	3 cut(s)	25, 397, 422
Bme1390I	CCNGG	6 cut(s)	264, 324, 348, 645, 860, 867
Bme18I	GGWCC	2 cut(s)	509, 940
BmgT120I	GGNCC	4 cut(s)	509, 940, 1026, 1138
BmiI	GGNNCC	3 cut(s)	837, 864, 942
BmrFI	CCNGG	6 cut(s)	264, 324, 348, 645, 860, 867
BmsI	GCATC	3 cut(s)	296, 542, 824
BpmI	CTGGAG	2 cut(s)	470, 606
BpuEI	CTTGAG	2 cut(s)	101, 741
BpuMI	CCSGG	1 cut(s)	867
Bsa29I	ATCGAT	1 cut(s)	441
BsaJI	CCNNGG	4 cut(s)	48, 274, 858, 1065
BsaXI	ACNNNNNCTCC	2 cut(s)	559, 589
Bsc4I	CCNNNNNNNGG	1 cut(s)	859
Bse1I	ACTGG	2 cut(s)	233, 1132
Bse3DI	GCAATG	3 cut(s)	384, 414, 1042
BseBI	CCWGG	5 cut(s)	264, 324, 348, 645, 860
BseCI	ATCGAT	1 cut(s)	441
BseDI	CCNNGG	4 cut(s)	48, 274, 858, 1065
BseGI	GGATG	2 cut(s)	590, 1076
BseLI	CCNNNNNNNGG	1 cut(s)	859
BseMI	GCAATG	3 cut(s)	384, 414, 1042
BseMII	CTCAG	2 cut(s)	269, 323
BseNI	ACTGG	2 cut(s)	233, 1132
BseXI	GCAGC	3 cut(s)	35, 382, 432
BseYI	CCCAGC	1 cut(s)	853
BsgI	GTGCAG	2 cut(s)	537, 705
BshFI	GGCC	3 cut(s)	383, 1028, 1139
BshVI	ATCGAT	1 cut(s)	441
BsiSI	CCGG	1 cut(s)	867
BslFI	GGGAC	1 cut(s)	190
BslI	CCNNNNNNNGG	1 cut(s)	859
BsmAI	GTCTC	1 cut(s)	256
BsmFI	GGGAC	1 cut(s)	190
BsmI	GAATGC	1 cut(s)	673
BsnI	GGCC	3 cut(s)	383, 1028, 1139
Bsp1407I	TGTACA	1 cut(s)	502
Bsp143I	GATC	6 cut(s)	157, 214, 223, 438, 472, 845
BspANI	GGCC	3 cut(s)	383, 1028, 1139
BspCNI	CTCAG	2 cut(s)	268, 322
BspDI	ATCGAT	1 cut(s)	441
BspLI	GGNNCC	3 cut(s)	837, 864, 942
BspMI	ACCTGC	1 cut(s)	727
BspPI	GGATC	3 cut(s)	446, 467, 853
BsrDI	GCAATG	3 cut(s)	384, 414, 1042
BsrGI	TGTACA	1 cut(s)	502
BsrI	ACTGG	2 cut(s)	233, 1132
BssECI	CCNNGG	4 cut(s)	48, 274, 858, 1065
BssMI	GATC	6 cut(s)	157, 214, 223, 438, 472, 845
BssT1I	CCWWGG	3 cut(s)	48, 274, 1065
Bst2UI	CCWGG	5 cut(s)	264, 324, 348, 645, 860
Bst4CI	ACNGT	3 cut(s)	247, 571, 694
Bst6I	CTCTTC	2 cut(s)	195, 684
BstAPI	GCANNNNNTGC	1 cut(s)	404
BstAUI	TGTACA	1 cut(s)	502
BstC8I	GCNNGC	1 cut(s)	14
BstDEI	CTNAG	3 cut(s)	62, 255, 309
BstF5I	GGATG	2 cut(s)	590, 1076
BstKTI	GATC	6 cut(s)	160, 217, 226, 441, 475, 848
BstMAI	GTCTC	1 cut(s)	256
BstMBI	GATC	6 cut(s)	157, 214, 223, 438, 472, 845
BstMWI	GCNNNNNNNGC	3 cut(s)	395, 404, 1145
BstNI	CCWGG	5 cut(s)	264, 324, 348, 645, 860
BstNSI	RCATGY	4 cut(s)	344, 643, 1051, 1111
BstSCI	CCNGG	6 cut(s)	262, 322, 346, 643, 858, 865
BstSFI	CTRYAG	1 cut(s)	246
BstV1I	GCAGC	3 cut(s)	35, 382, 432
BstX2I	RGATCY	2 cut(s)	223, 845
BstYI	RGATCY	2 cut(s)	223, 845
Bsu15I	ATCGAT	1 cut(s)	441
BsuRI	GGCC	3 cut(s)	383, 1028, 1139
BsuTUI	ATCGAT	1 cut(s)	441
BtgZI	GCGATG	1 cut(s)	801
BtsCI	GGATG	2 cut(s)	590, 1076
BtsIMutI	CAGTG	2 cut(s)	243, 543
BveI	ACCTGC	1 cut(s)	727
Cac8I	GCNNGC	1 cut(s)	14
CaiI	CAGNNNCTG	1 cut(s)	692
Cfr13I	GGNCC	4 cut(s)	509, 940, 1026, 1138
ClaI	ATCGAT	1 cut(s)	441
CsiI	ACCWGGT	1 cut(s)	262
Csp6I	GTAC	3 cut(s)	338, 503, 657
CviQI	GTAC	3 cut(s)	338, 503, 657
DdeI	CTNAG	3 cut(s)	62, 255, 309
DpnI	GATC	6 cut(s)	159, 216, 225, 440, 474, 847
DpnII	GATC	6 cut(s)	157, 214, 223, 438, 472, 845
DraIII	CACNNNGTG	1 cut(s)	982
EaeI	YGGCCR	1 cut(s)	381
Eam1104I	CTCTTC	2 cut(s)	195, 684
EarI	CTCTTC	2 cut(s)	195, 684
Eco130I	CCWWGG	3 cut(s)	48, 274, 1065
Eco47I	GGWCC	2 cut(s)	509, 940
Eco57I	CTGAAG	1 cut(s)	375
EcoO109I	RGGNCCY	1 cut(s)	940
EcoRII	CCWGG	5 cut(s)	262, 322, 346, 643, 858
EcoT14I	CCWWGG	3 cut(s)	48, 274, 1065
ErhI	CCWWGG	3 cut(s)	48, 274, 1065
FaqI	GGGAC	1 cut(s)	190
FbaI	TGATCA	1 cut(s)	157
Fnu4HI	GCNGC	3 cut(s)	24, 396, 421
FokI	GGATG	2 cut(s)	577, 1083
Fsp4HI	GCNGC	3 cut(s)	24, 396, 421
FspBI	CTAG	1 cut(s)	117
GluI	GCNGC	3 cut(s)	24, 396, 421
GsaI	CCCAGC	1 cut(s)	857
GsuI	CTGGAG	2 cut(s)	470, 606
HaeIII	GGCC	3 cut(s)	383, 1028, 1139
HapII	CCGG	1 cut(s)	867
HinfI	GANTC	3 cut(s)	203, 463, 619
HpaII	CCGG	1 cut(s)	867
HphI	GGTGA	2 cut(s)	41, 720
Hpy166II	GTNNAC	3 cut(s)	238, 985, 1003
Hpy188I	TCNGA	2 cut(s)	477, 607
Hpy188III	TCNNGA	4 cut(s)	218, 291, 487, 623
Hpy8I	GTNNAC	3 cut(s)	238, 985, 1003
HpyAV	CCTTC	2 cut(s)	421, 750
HpyCH4III	ACNGT	3 cut(s)	247, 571, 694
HpyCH4IV	ACGT	1 cut(s)	138
HpyF10VI	GCNNNNNNNGC	3 cut(s)	395, 404, 1145
HpyF3I	CTNAG	3 cut(s)	62, 255, 309
HpySE526I	ACGT	1 cut(s)	138
Ksp22I	TGATCA	1 cut(s)	157
Kzo9I	GATC	6 cut(s)	157, 214, 223, 438, 472, 845
LmnI	GCTCC	2 cut(s)	331, 489
Lsp1109I	GCAGC	3 cut(s)	35, 382, 432
LweI	GCATC	3 cut(s)	296, 542, 824
MabI	ACCWGGT	1 cut(s)	262
MaeI	CTAG	1 cut(s)	117
MaeII	ACGT	1 cut(s)	138
MaeIII	GTNAC	5 cut(s)	5, 354, 571, 629, 962
MalI	GATC	6 cut(s)	159, 216, 225, 440, 474, 847
MboI	GATC	6 cut(s)	157, 214, 223, 438, 472, 845
MboII	GAAGA	7 cut(s)	53, 209, 212, 224, 233, 424, 671
MfeI	CAATTG	1 cut(s)	192
MflI	RGATCY	2 cut(s)	223, 845
MluCI	AATT	8 cut(s)	108, 192, 491, 528, 698, 870, 1087, 1117
MlyI	GAGTC	2 cut(s)	212, 613
MmeI	TCCRAC	1 cut(s)	339
MseI	TTAA	8 cut(s)	401, 459, 468, 498, 710, 809, 1115, 1173
MspA1I	CMGCKG	2 cut(s)	26, 395
MspI	CCGG	1 cut(s)	867
MspR9I	CCNGG	6 cut(s)	264, 324, 348, 645, 860, 867
MunI	CAATTG	1 cut(s)	192
Mva1269I	GAATGC	1 cut(s)	673
MvaI	CCWGG	5 cut(s)	264, 324, 348, 645, 860
MwoI	GCNNNNNNNGC	3 cut(s)	395, 404, 1145
NciI	CCSGG	1 cut(s)	867
NdeII	GATC	6 cut(s)	157, 214, 223, 438, 472, 845
NlaIV	GGNNCC	3 cut(s)	837, 864, 942
NmuCI	GTSAC	1 cut(s)	5
NspI	RCATGY	4 cut(s)	344, 643, 1051, 1111
PciI	ACATGT	1 cut(s)	1107
PctI	GAATGC	1 cut(s)	673
PfeI	GAWTC	1 cut(s)	463
PkrI	GCNGC	3 cut(s)	25, 397, 422
PleI	GAGTC	2 cut(s)	211, 613
PpsI	GAGTC	2 cut(s)	211, 613
PpuMI	RGGWCCY	1 cut(s)	940
PscI	ACATGT	1 cut(s)	1107
PshBI	ATTAAT	1 cut(s)	498
Psp5II	RGGWCCY	1 cut(s)	940
Psp6I	CCWGG	5 cut(s)	262, 322, 346, 643, 858
PspFI	CCCAGC	1 cut(s)	853
PspGI	CCWGG	5 cut(s)	262, 322, 346, 643, 858
PspN4I	GGNNCC	3 cut(s)	837, 864, 942
PspPI	GGNCC	4 cut(s)	509, 940, 1026, 1138
PspPPI	RGGWCCY	1 cut(s)	940
PstNI	CAGNNNCTG	1 cut(s)	692
PsuI	RGATCY	2 cut(s)	223, 845
PvuII	CAGCTG	2 cut(s)	26, 395
RsaI	GTAC	3 cut(s)	339, 504, 658
RsaNI	GTAC	3 cut(s)	338, 503, 657
SaqAI	TTAA	8 cut(s)	401, 459, 468, 498, 710, 809, 1115, 1173
SatI	GCNGC	3 cut(s)	24, 396, 421
Sau3AI	GATC	6 cut(s)	157, 214, 223, 438, 472, 845
Sau96I	GGNCC	4 cut(s)	509, 940, 1026, 1138
SchI	GAGTC	2 cut(s)	212, 613
ScrFI	CCNGG	6 cut(s)	264, 324, 348, 645, 860, 867
SexAI	ACCWGGT	1 cut(s)	262
SfaNI	GCATC	3 cut(s)	296, 542, 824
SfcI	CTRYAG	1 cut(s)	246
SinI	GGWCC	2 cut(s)	509, 940
SmlI	CTYRAG	2 cut(s)	80, 756
SmoI	CTYRAG	2 cut(s)	80, 756
Sse9I	AATT	8 cut(s)	108, 192, 491, 528, 698, 870, 1087, 1117
SspMI	CTAG	1 cut(s)	117
StyD4I	CCNGG	6 cut(s)	262, 322, 346, 643, 858, 865
StyI	CCWWGG	3 cut(s)	48, 274, 1065
TaaI	ACNGT	3 cut(s)	247, 571, 694
TaiI	ACGT	1 cut(s)	141
TaqI	TCGA	2 cut(s)	441, 1037
TasI	AATT	8 cut(s)	108, 192, 491, 528, 698, 870, 1087, 1117
TatI	WGTACW	2 cut(s)	337, 502
TfiI	GAWTC	1 cut(s)	463
Tru1I	TTAA	8 cut(s)	401, 459, 468, 498, 710, 809, 1115, 1173
Tru9I	TTAA	8 cut(s)	401, 459, 468, 498, 710, 809, 1115, 1173
TscAI	CASTG	2 cut(s)	250, 543
TseFI	GTSAC	1 cut(s)	5
TseI	GCWGC	3 cut(s)	23, 395, 420
Tsp45I	GTSAC	1 cut(s)	5
TspDTI	ATGAA	3 cut(s)	425, 899, 1172
TspRI	CASTG	2 cut(s)	250, 543
VpaK11BI	GGWCC	2 cut(s)	509, 940
VspI	ATTAAT	1 cut(s)	498
XceI	RCATGY	4 cut(s)	344, 643, 1051, 1111
XspI	CTAG	1 cut(s)	117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.