Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0011509

Physical Location & Seq

Genomic Coordinates Reverse (-)

11053428 .. 11057342

Gene Structure 3915 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016896

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1548 bp

ATGAAGCGATCGAGGAAATCAATTTCTTGGGCTCCTGGAGTTAAACTTTGTCAGGTAAAGCTGTTCTCTTCTTTGGATTGTCCTGTGGATGTTGGCATGAAATATCAAGGTCATTTTCAACCGAAGACATCAAGTATGTTGCATTCCAGTTCTTTTGAACACAATGATAGCCCGCCTGGGTTTGAAGTAGGTGTCTCTGTGAAGCAATCTATGCTGCAACATTTCCCCATCCCTCAGATTAGGTGGCAATGCCCTTCCAAGCTTATTATGCGCGACGGCTGGCATGTAGCAGCTGGTGAGGAAAGTGAAGAAGCCAAGGCTCAAAAACTAAGAGAGATGAGAGTGCTTGAGGCAGTATATCCTCGTTTTTCTGCAATTCCACCTAGTCCCTCTGTTTCGTTGGACGTAGAACGTGAGCATTATGATCATAGCCTCACTCCTTGTGTTCCCATCAATCCAATTGAAGAAGAGTCCCAAGAAGATCAAGAAGATCTAACACCAGTAAACACCACTGTAGTCTCTCAGCTACCAGGTTTTCCCCAAGGTCTGTTGGCATCTGGAACTGCAAATGTTTCTGAGTCCAACCCTCCTGGTTTGGAGCAAGTACATGCACCAGGAAAGTTACCTAATCAAAGTACTGATTTTACGGCCATTGCTTCAGCTGCATTAACTGCAATGAAGAATAGCAGCGAGAAGGAAAGTATGATCGATACTGATTTGCTTATTAAGATTCTTAACGATCCGAAAATGCTCCAGAAATTGATTAATGTACATGGACCACAAGCCAATACAGGAATTGCATCAGTGAATACACATACTGCACCAAGTTCAAAGACGGTGACTCCCTATGTTCCCTCATCCCTTTCAAACTCTGATATGCAAAGGACTCCAGATGGTAACTTCCACATGCCAGGTAAAGTGGGTACTACTTTGAATGCAATCCCTCTTCAACCAGATACTGTTCAATTATCTGGGTTAAAGCGACCTGCACCATTACCACCATTACCTTCCTCGTCCAGCCCTCAAGCTGACCATGTTCAATCTGGGTTAAAGCGATCTGCACCATCGCCACCATTGCCTTCCTTGTCCAGCCCTCAAGCTGACCATGTTCTACTGCCCAGACTGCCAAATCAGGCACAACCCCCATTAAGTGCCCCATTAAGTGCATCGCCTGAACAGAACATGGTTCTCTTAGGATCTTTCCCAGTCCAGGAACCCGGAATTGTCAAGGACATGAACTACTATAAGAACCTCATTAGGCAACATGGAACAGAAAATAAAGAAATGCAGGACCCCATTTTGCTCAAAAATGGTAACAATCATAATCACTTGGTGGACTTGAAAATGTCTGTAAACTCTAATCCGGCAGAAATGAGGGCCAAGAAATCGAAACATTGTATGTTTTTCAAAACTGCAAAGGGATGTCGTAAGGGTGCTAATTGTGAATACCTCCATGACATGTCGTTTAATTGGCGAACTGGAATGGAGGCCCAAAGTGCCAAGAGAATGAAACTAAATGGGGTTAGTAAGGGGAGGAGTACGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

516

Amino Acids

56.32

Weight (kDa)

8.67

Isoelectric Point (pI)

56.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011509)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g11990 FvH4_1g11990 FvH4_1g11990 FvH4_1g11990 FvH4_1g11990
malus_domestica	MD02G1134000.v1.1 MD15G1247000.v1.1
prunus_persica	Prupe.7G166800_v2.0.a1
pyrus_communis	pycom02g10560 pycom15g21720
rosa_chinensis	RchiOBHm_Chr2g0099611
rosa_laevigata	RLG00000016896
rosa_multiflora	Rmu_sc0005120.1_g000013
rosa_roxburghii	Rroxscaffold_2G00142920
rosa_rugosa	Rorug02G0081500
rosa_samantha	Rh2AG131000 Rh2BG134200 Rh2CG135100 Rh2DG135600
rosa_wichuraiana	Rw2G010110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	994
AccII	CGCG	1 cut(s)	273
AciI	CCGC	1 cut(s)	173
AclWI	GGATC	2 cut(s)	734, 1204
AcoI	YGGCCR	1 cut(s)	648
AcuI	CTGAAG	1 cut(s)	642
AdeI	CACNNNGTG	1 cut(s)	1333
AfaI	GTAC	5 cut(s)	606, 637, 771, 925, 1540
AfiI	CCNNNNNNNGG	1 cut(s)	1210
AflIII	ACRYGT	1 cut(s)	1458
AjnI	CCWGG	7 cut(s)	34, 175, 529, 589, 613, 910, 1209
AluBI	AGCT	7 cut(s)	61, 262, 293, 526, 662, 1028, 1100
AluI	AGCT	7 cut(s)	61, 262, 293, 526, 662, 1028, 1100
Alw26I	GTCTC	2 cut(s)	199, 523
AlwI	GGATC	2 cut(s)	734, 1204
AlwNI	CAGNNNCTG	1 cut(s)	959
AoxI	GGCC	3 cut(s)	648, 1377, 1488
ApeKI	GCWGC	4 cut(s)	214, 290, 662, 687
AseI	ATTAAT	1 cut(s)	765
AspLEI	GCGC	1 cut(s)	273
AspS9I	GGNCC	4 cut(s)	776, 1291, 1377, 1489
AsuC2I	CCSGG	1 cut(s)	1218
AsuHPI	GGTGA	2 cut(s)	308, 850
AvaII	GGWCC	2 cut(s)	776, 1291
BaeGI	GKGCMC	1 cut(s)	1156
BanII	GRGCYC	1 cut(s)	34
BbsI	GAAGAC	1 cut(s)	131
BbvI	GCAGC	4 cut(s)	201, 302, 649, 699
BccI	CCATC	4 cut(s)	236, 458, 887, 1072
BceAI	ACGGC	2 cut(s)	292, 663
BciT130I	CCWGG	7 cut(s)	36, 177, 531, 591, 615, 912, 1211
BclI	TGATCA	1 cut(s)	424
BcnI	CCSGG	1 cut(s)	1218
BcoDI	GTCTC	2 cut(s)	199, 523
BfaI	CTAG	1 cut(s)	384
BfmI	CTRYAG	1 cut(s)	513
BfuAI	ACCTGC	1 cut(s)	994
BglII	AGATCT	1 cut(s)	490
BisI	GCNGC	4 cut(s)	215, 291, 663, 688
BlsI	GCNGC	4 cut(s)	216, 292, 664, 689
BmcAI	AGTACT	1 cut(s)	637
Bme1390I	CCNGG	8 cut(s)	36, 177, 531, 591, 615, 912, 1211, 1218
Bme18I	GGWCC	2 cut(s)	776, 1291
BmgT120I	GGNCC	4 cut(s)	776, 1291, 1377, 1489
BmiI	GGNNCC	3 cut(s)	33, 1215, 1293
BmrFI	CCNGG	8 cut(s)	36, 177, 531, 591, 615, 912, 1211, 1218
BmrI	ACTGGG	1 cut(s)	1199
BmsI	GCATC	3 cut(s)	563, 809, 1175
BmuI	ACTGGG	1 cut(s)	1199
BpiI	GAAGAC	1 cut(s)	131
BpmI	CTGGAG	3 cut(s)	57, 737, 873
BpuEI	CTTGAG	3 cut(s)	368, 1008, 1080
BpuMI	CCSGG	1 cut(s)	1218
Bsa29I	ATCGAT	1 cut(s)	708
BsaJI	CCNNGG	3 cut(s)	176, 315, 541
BsaXI	ACNNNNNCTCC	2 cut(s)	826, 856
Bsc4I	CCNNNNNNNGG	1 cut(s)	1210
Bse1I	ACTGG	4 cut(s)	147, 500, 1205, 1483
Bse3DI	GCAATG	4 cut(s)	254, 651, 681, 1073
BseBI	CCWGG	7 cut(s)	36, 177, 531, 591, 615, 912, 1211
BseCI	ATCGAT	1 cut(s)	708
BseDI	CCNNGG	3 cut(s)	176, 315, 541
BseGI	GGATG	4 cut(s)	94, 228, 857, 1427
BseLI	CCNNNNNNNGG	1 cut(s)	1210
BseMI	GCAATG	4 cut(s)	254, 651, 681, 1073
BseMII	CTCAG	3 cut(s)	248, 536, 567
BseNI	ACTGG	4 cut(s)	147, 500, 1205, 1483
BseSI	GKGCMC	1 cut(s)	1156
BseXI	GCAGC	4 cut(s)	201, 302, 649, 699
BsgI	GTGCAG	3 cut(s)	804, 972, 1044
Bsh1236I	CGCG	1 cut(s)	273
Bsh1285I	CGRYCG	1 cut(s)	11
BshFI	GGCC	3 cut(s)	650, 1379, 1490
BshVI	ATCGAT	1 cut(s)	708
BsiEI	CGRYCG	1 cut(s)	11
BsiSI	CCGG	2 cut(s)	1218, 1364
BslFI	GGGAC	2 cut(s)	372, 457
BslI	CCNNNNNNNGG	1 cut(s)	1210
BsmAI	GTCTC	2 cut(s)	199, 523
BsmFI	GGGAC	2 cut(s)	372, 457
BsmI	GAATGC	2 cut(s)	142, 940
BsnI	GGCC	3 cut(s)	650, 1379, 1490
Bsp1286I	GDGCHC	2 cut(s)	34, 1156
Bsp1407I	TGTACA	1 cut(s)	769
Bsp143I	GATC	8 cut(s)	8, 424, 481, 490, 705, 739, 1055, 1196
BspACI	CCGC	1 cut(s)	173
BspANI	GGCC	3 cut(s)	650, 1379, 1490
BspCNI	CTCAG	3 cut(s)	247, 535, 568
BspDI	ATCGAT	1 cut(s)	708
BspFNI	CGCG	1 cut(s)	273
BspLI	GGNNCC	3 cut(s)	33, 1215, 1293
BspMI	ACCTGC	1 cut(s)	994
BspPI	GGATC	2 cut(s)	734, 1204
BsrDI	GCAATG	4 cut(s)	254, 651, 681, 1073
BsrGI	TGTACA	1 cut(s)	769
BsrI	ACTGG	4 cut(s)	147, 500, 1205, 1483
BssECI	CCNNGG	3 cut(s)	176, 315, 541
BssMI	GATC	8 cut(s)	8, 424, 481, 490, 705, 739, 1055, 1196
BssT1I	CCWWGG	2 cut(s)	315, 541
Bst2UI	CCWGG	7 cut(s)	36, 177, 531, 591, 615, 912, 1211
Bst4CI	ACNGT	3 cut(s)	514, 838, 961
Bst6I	CTCTTC	3 cut(s)	73, 462, 951
BstAPI	GCANNNNNTGC	2 cut(s)	211, 671
BstAUI	TGTACA	1 cut(s)	769
BstC8I	GCNNGC	2 cut(s)	173, 281
BstDEI	CTNAG	5 cut(s)	234, 329, 522, 576, 1192
BstF5I	GGATG	4 cut(s)	94, 228, 857, 1427
BstFNI	CGCG	1 cut(s)	273
BstHHI	GCGC	1 cut(s)	273
BstKTI	GATC	8 cut(s)	11, 427, 484, 493, 708, 742, 1058, 1199
BstMAI	GTCTC	2 cut(s)	199, 523
BstMBI	GATC	8 cut(s)	8, 424, 481, 490, 705, 739, 1055, 1196
BstMCI	CGRYCG	1 cut(s)	11
BstMWI	GCNNNNNNNGC	7 cut(s)	211, 268, 662, 671, 1075, 1123, 1496
BstNI	CCWGG	7 cut(s)	36, 177, 531, 591, 615, 912, 1211
BstNSI	RCATGY	4 cut(s)	287, 611, 910, 1462
BstSCI	CCNGG	8 cut(s)	34, 175, 529, 589, 613, 910, 1209, 1216
BstSFI	CTRYAG	1 cut(s)	513
BstSLI	GKGCMC	1 cut(s)	1156
BstUI	CGCG	1 cut(s)	273
BstV1I	GCAGC	4 cut(s)	201, 302, 649, 699
BstV2I	GAAGAC	1 cut(s)	131
BstX2I	RGATCY	2 cut(s)	490, 1196
BstYI	RGATCY	2 cut(s)	490, 1196
Bsu15I	ATCGAT	1 cut(s)	708
BsuRI	GGCC	3 cut(s)	650, 1379, 1490
BsuTUI	ATCGAT	1 cut(s)	708
BtgZI	GCGATG	2 cut(s)	1050, 1152
BtsCI	GGATG	4 cut(s)	94, 228, 857, 1427
BtsIMutI	CAGTG	2 cut(s)	510, 810
BveI	ACCTGC	1 cut(s)	994
Cac8I	GCNNGC	2 cut(s)	173, 281
CaiI	CAGNNNCTG	1 cut(s)	959
CfoI	GCGC	1 cut(s)	273
Cfr13I	GGNCC	4 cut(s)	776, 1291, 1377, 1489
ClaI	ATCGAT	1 cut(s)	708
CsiI	ACCWGGT	1 cut(s)	529
Csp6I	GTAC	5 cut(s)	605, 636, 770, 924, 1539
CviQI	GTAC	5 cut(s)	605, 636, 770, 924, 1539
DdeI	CTNAG	5 cut(s)	234, 329, 522, 576, 1192
DpnI	GATC	8 cut(s)	10, 426, 483, 492, 707, 741, 1057, 1198
DpnII	GATC	8 cut(s)	8, 424, 481, 490, 705, 739, 1055, 1196
DraIII	CACNNNGTG	1 cut(s)	1333
EaeI	YGGCCR	1 cut(s)	648
Eam1104I	CTCTTC	3 cut(s)	73, 462, 951
EarI	CTCTTC	3 cut(s)	73, 462, 951
Eco130I	CCWWGG	2 cut(s)	315, 541
Eco24I	GRGCYC	1 cut(s)	34
Eco47I	GGWCC	2 cut(s)	776, 1291
Eco57I	CTGAAG	1 cut(s)	642
EcoO109I	RGGNCCY	1 cut(s)	1291
EcoRII	CCWGG	7 cut(s)	34, 175, 529, 589, 613, 910, 1209
EcoT14I	CCWWGG	2 cut(s)	315, 541
EcoT38I	GRGCYC	1 cut(s)	34
ErhI	CCWWGG	2 cut(s)	315, 541
FaqI	GGGAC	2 cut(s)	372, 457
FauI	CCCGC	1 cut(s)	180
FbaI	TGATCA	1 cut(s)	424
Fnu4HI	GCNGC	4 cut(s)	215, 291, 663, 688
FokI	GGATG	4 cut(s)	101, 215, 844, 1434
FriOI	GRGCYC	1 cut(s)	34
Fsp4HI	GCNGC	4 cut(s)	215, 291, 663, 688
FspBI	CTAG	1 cut(s)	384
GlaI	GCGC	1 cut(s)	272
GluI	GCNGC	4 cut(s)	215, 291, 663, 688
GsuI	CTGGAG	3 cut(s)	57, 737, 873
HaeIII	GGCC	3 cut(s)	650, 1379, 1490
HapII	CCGG	2 cut(s)	1218, 1364
HhaI	GCGC	1 cut(s)	273
Hin6I	GCGC	1 cut(s)	271
HinP1I	GCGC	1 cut(s)	271
HindIII	AAGCTT	1 cut(s)	260
HinfI	GANTC	5 cut(s)	470, 578, 730, 841, 886
HpaII	CCGG	2 cut(s)	1218, 1364
HphI	GGTGA	2 cut(s)	308, 850
Hpy166II	GTNNAC	3 cut(s)	505, 1336, 1354
Hpy188I	TCNGA	4 cut(s)	237, 577, 744, 874
Hpy188III	TCNNGA	4 cut(s)	485, 558, 754, 890
Hpy8I	GTNNAC	3 cut(s)	505, 1336, 1354
Hpy99I	CGWCG	1 cut(s)	278
HpyAV	CCTTC	4 cut(s)	264, 688, 1017, 1089
HpyCH4III	ACNGT	3 cut(s)	514, 838, 961
HpyCH4IV	ACGT	3 cut(s)	405, 412, 1541
HpyF10VI	GCNNNNNNNGC	7 cut(s)	211, 268, 662, 671, 1075, 1123, 1496
HpyF3I	CTNAG	5 cut(s)	234, 329, 522, 576, 1192
HpySE526I	ACGT	3 cut(s)	405, 412, 1541
HspAI	GCGC	1 cut(s)	271
Ksp22I	TGATCA	1 cut(s)	424
Kzo9I	GATC	8 cut(s)	8, 424, 481, 490, 705, 739, 1055, 1196
LmnI	GCTCC	3 cut(s)	37, 598, 756
Lsp1109I	GCAGC	4 cut(s)	201, 302, 649, 699
LweI	GCATC	3 cut(s)	563, 809, 1175
MabI	ACCWGGT	1 cut(s)	529
MaeI	CTAG	1 cut(s)	384
MaeII	ACGT	3 cut(s)	405, 412, 1541
MaeIII	GTNAC	4 cut(s)	621, 838, 896, 1313
MalI	GATC	8 cut(s)	10, 426, 483, 492, 707, 741, 1057, 1198
MboI	GATC	8 cut(s)	8, 424, 481, 490, 705, 739, 1055, 1196
MboII	GAAGA	9 cut(s)	60, 136, 320, 476, 479, 491, 500, 691, 938
MfeI	CAATTG	1 cut(s)	459
MflI	RGATCY	2 cut(s)	490, 1196
MhlI	GDGCHC	2 cut(s)	34, 1156
MluCI	AATT	9 cut(s)	21, 375, 459, 758, 795, 965, 1221, 1438, 1468
MlyI	GAGTC	4 cut(s)	479, 587, 835, 880
MmeI	TCCRAC	2 cut(s)	381, 606
MspA1I	CMGCKG	2 cut(s)	293, 662
MspI	CCGG	2 cut(s)	1218, 1364
MspR9I	CCNGG	8 cut(s)	36, 177, 531, 591, 615, 912, 1211, 1218
MunI	CAATTG	1 cut(s)	459
Mva1269I	GAATGC	2 cut(s)	142, 940
MvaI	CCWGG	7 cut(s)	36, 177, 531, 591, 615, 912, 1211
MvnI	CGCG	1 cut(s)	273
MwoI	GCNNNNNNNGC	7 cut(s)	211, 268, 662, 671, 1075, 1123, 1496
NciI	CCSGG	1 cut(s)	1218
NdeII	GATC	8 cut(s)	8, 424, 481, 490, 705, 739, 1055, 1196
NlaIV	GGNNCC	3 cut(s)	33, 1215, 1293
NmuCI	GTSAC	1 cut(s)	838
NspI	RCATGY	4 cut(s)	287, 611, 910, 1462
PciI	ACATGT	1 cut(s)	1458
PctI	GAATGC	2 cut(s)	142, 940
PfeI	GAWTC	1 cut(s)	730
PfoI	TCCNGGA	2 cut(s)	34, 1209
PkrI	GCNGC	4 cut(s)	216, 292, 664, 689
Ple19I	CGATCG	1 cut(s)	11
PleI	GAGTC	4 cut(s)	478, 586, 835, 880
PpsI	GAGTC	4 cut(s)	478, 586, 835, 880
PpuMI	RGGWCCY	1 cut(s)	1291
PscI	ACATGT	1 cut(s)	1458
PshBI	ATTAAT	1 cut(s)	765
Psp5II	RGGWCCY	1 cut(s)	1291
Psp6I	CCWGG	7 cut(s)	34, 175, 529, 589, 613, 910, 1209
PspGI	CCWGG	7 cut(s)	34, 175, 529, 589, 613, 910, 1209
PspN4I	GGNNCC	3 cut(s)	33, 1215, 1293
PspPI	GGNCC	4 cut(s)	776, 1291, 1377, 1489
PspPPI	RGGWCCY	1 cut(s)	1291
PstNI	CAGNNNCTG	1 cut(s)	959
PsuI	RGATCY	2 cut(s)	490, 1196
PvuI	CGATCG	1 cut(s)	11
PvuII	CAGCTG	2 cut(s)	293, 662
RsaI	GTAC	5 cut(s)	606, 637, 771, 925, 1540
RsaNI	GTAC	5 cut(s)	605, 636, 770, 924, 1539
SatI	GCNGC	4 cut(s)	215, 291, 663, 688
Sau3AI	GATC	8 cut(s)	8, 424, 481, 490, 705, 739, 1055, 1196
Sau96I	GGNCC	4 cut(s)	776, 1291, 1377, 1489
ScaI	AGTACT	1 cut(s)	637
SchI	GAGTC	4 cut(s)	479, 587, 835, 880
ScrFI	CCNGG	8 cut(s)	36, 177, 531, 591, 615, 912, 1211, 1218
SduI	GDGCHC	2 cut(s)	34, 1156
SexAI	ACCWGGT	1 cut(s)	529
SfaNI	GCATC	3 cut(s)	563, 809, 1175
SfcI	CTRYAG	1 cut(s)	513
SinI	GGWCC	2 cut(s)	776, 1291
SmlI	CTYRAG	3 cut(s)	347, 1023, 1095
SmoI	CTYRAG	3 cut(s)	347, 1023, 1095
Sse9I	AATT	9 cut(s)	21, 375, 459, 758, 795, 965, 1221, 1438, 1468
SsiI	CCGC	1 cut(s)	173
SspMI	CTAG	1 cut(s)	384
StyD4I	CCNGG	8 cut(s)	34, 175, 529, 589, 613, 910, 1209, 1216
StyI	CCWWGG	2 cut(s)	315, 541
TaaI	ACNGT	3 cut(s)	514, 838, 961
TaiI	ACGT	3 cut(s)	408, 415, 1544
TaqI	TCGA	3 cut(s)	11, 708, 1388
TasI	AATT	9 cut(s)	21, 375, 459, 758, 795, 965, 1221, 1438, 1468
TatI	WGTACW	3 cut(s)	604, 635, 769
TfiI	GAWTC	1 cut(s)	730
TscAI	CASTG	2 cut(s)	517, 810
TseFI	GTSAC	1 cut(s)	838
TseI	GCWGC	4 cut(s)	214, 290, 662, 687
Tsp45I	GTSAC	1 cut(s)	838
TspDTI	ATGAA	5 cut(s)	17, 113, 692, 1250, 1523
TspRI	CASTG	2 cut(s)	517, 810
VpaK11BI	GGWCC	2 cut(s)	776, 1291
VspI	ATTAAT	1 cut(s)	765
XceI	RCATGY	4 cut(s)	287, 611, 910, 1462
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1040
XspI	CTAG	1 cut(s)	384
ZrmI	AGTACT	1 cut(s)	637

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.