Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005120.1

Orthogroup ID

OG0011509

Physical Location & Seq

Genomic Coordinates Reverse (-)

58600 .. 62480

Gene Structure 3881 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005120.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1536 bp

atgaagcgatcgaggaaatcaatttcttgggctcctggagttaaactttgtcaggtaaaactgttctcttctttggattgtcctgtggaagttggcatgaaatatcaaggtcattttcaaccgaagacatcaagtatgttgcattccagttcatttgaacccaatgatagcccgcctgggtttgaagttggtatctctgtgaagcaatctaagctgcaacatttccccatccctcagattaggtggcaatgcccttccaagcttatcatgcatgacggctggcgtgtagcagctggtgaggaaagtgaagaagccaaggctcaaaaactaagagagatgagagtgcttgaggcagtatatcctcgtttttctgcaattccacctagcccctctgtttctttggacgtagaaagtgagcattatgatcatagcctcactccttttgttcccatcaatccaattgaagaagagtcccaagaagatcaagaagatctaacaccagtaaacaccactgtagtctctcagctaccaggttttccccaaggtctgttggcatctggaactgcaaatgtttctgagtccaaccctcctggtttggagcaaataaatgcaccaggaaagttacctaatcaaagtgctgattttacggccattgcttcagctgcattaactgcaatgaagaatagcagcgagaaggaaagtatgatcgatactgatttgcttattaagattcttaacgatccgaaaatgctccagaaattgattaatgtacatggaccacaagccaatacaggaattgcatcagtgaatacacatactgcaccaagttcaaagacggtaactccctatgttccctcatccctttcaaactctgatatgcaaaggactccagatggtaacttccacatgccaggtaaagtgggtactactttgaatgcaatccctcttcaaccagatactgttcaattatctgggttaaagcgacctgcaccatcaccaccattaccttcctcgtccagccctcaagctgaccatgttcaatctgggttaaagcgacgtgcaccatcgccaccattaccttccttgcccagccctcaagctgaccatgttctactgcccagactgccaaatcaggcacaacccccattaagtgcatcgcctgaacagaacatggttcccttaggatctttcccagtccaggaacccggaattgtcaaggacatgaactactataagaacctcattaggcaacatggaacagaaaataaagaaatgcaggaccccattttgctcaaaaatggtaacaatcataatcacttggtggacttgaaaatgtctgtaaactctaatccagcagaaatgagggccaagaaatcgaaacattgcatgtttttcaaaactgccaagggatgtcgtaagggtgctaattgtgaatacctccatgacatgtcgttaaattggcgaactggaatggaggcccaaagtgccaagagaatgaaactaaatggggttaataaggggaggagtatgttctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

511

Amino Acids

55.93

Weight (kDa)

8.82

Isoelectric Point (pI)

61.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011509)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g11990 FvH4_1g11990 FvH4_1g11990 FvH4_1g11990 FvH4_1g11990
malus_domestica	MD02G1134000.v1.1 MD15G1247000.v1.1
prunus_persica	Prupe.7G166800_v2.0.a1
pyrus_communis	pycom02g10560 pycom15g21720
rosa_chinensis	RchiOBHm_Chr2g0099611
rosa_laevigata	RLG00000016896
rosa_multiflora	Rmu_sc0005120.1_g000013
rosa_roxburghii	Rroxscaffold_2G00142920
rosa_rugosa	Rorug02G0081500
rosa_samantha	Rh2AG131000 Rh2BG134200 Rh2CG135100 Rh2DG135600
rosa_wichuraiana	Rw2G010110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	994
AciI	CCGC	1 cut(s)	173
AclWI	GGATC	2 cut(s)	734, 1192
AcoI	YGGCCR	1 cut(s)	648
AcuI	CTGAAG	1 cut(s)	642
AdeI	CACNNNGTG	1 cut(s)	1321
AfaI	GTAC	2 cut(s)	771, 925
AfiI	CCNNNNNNNGG	1 cut(s)	1198
AflIII	ACRYGT	1 cut(s)	1446
AjiI	CACGTC	1 cut(s)	1058
AjnI	CCWGG	7 cut(s)	34, 175, 529, 589, 613, 910, 1197
AluBI	AGCT	7 cut(s)	214, 262, 293, 526, 662, 1028, 1100
AluI	AGCT	7 cut(s)	214, 262, 293, 526, 662, 1028, 1100
Alw21I	GWGCWC	1 cut(s)	1063
Alw26I	GTCTC	1 cut(s)	523
Alw44I	GTGCAC	1 cut(s)	1059
AlwI	GGATC	2 cut(s)	734, 1192
AlwNI	CAGNNNCTG	1 cut(s)	959
AoxI	GGCC	3 cut(s)	648, 1365, 1476
ApaLI	GTGCAC	1 cut(s)	1059
ApeKI	GCWGC	4 cut(s)	214, 290, 662, 687
AseI	ATTAAT	1 cut(s)	765
AspS9I	GGNCC	4 cut(s)	776, 1279, 1365, 1477
AsuC2I	CCSGG	1 cut(s)	1206
AsuHPI	GGTGA	2 cut(s)	308, 987
AvaII	GGWCC	2 cut(s)	776, 1279
AxyI	CCTNAGG	1 cut(s)	1180
BaeGI	GKGCMC	1 cut(s)	1063
BanII	GRGCYC	1 cut(s)	34
BbsI	GAAGAC	1 cut(s)	131
Bbv12I	GWGCWC	1 cut(s)	1063
BbvI	GCAGC	4 cut(s)	201, 302, 649, 699
BccI	CCATC	5 cut(s)	236, 458, 887, 1000, 1072
BceAI	ACGGC	2 cut(s)	292, 663
BciT130I	CCWGG	7 cut(s)	36, 177, 531, 591, 615, 912, 1199
BclI	TGATCA	1 cut(s)	424
BcnI	CCSGG	1 cut(s)	1206
BcoDI	GTCTC	1 cut(s)	523
BfaI	CTAG	2 cut(s)	384, 1534
BfmI	CTRYAG	1 cut(s)	513
BfuAI	ACCTGC	1 cut(s)	994
BglII	AGATCT	1 cut(s)	490
BisI	GCNGC	4 cut(s)	215, 291, 663, 688
BlsI	GCNGC	4 cut(s)	216, 292, 664, 689
Bme1390I	CCNGG	8 cut(s)	36, 177, 531, 591, 615, 912, 1199, 1206
Bme18I	GGWCC	2 cut(s)	776, 1279
BmgBI	CACGTC	1 cut(s)	1058
BmgT120I	GGNCC	4 cut(s)	776, 1279, 1365, 1477
BmiI	GGNNCC	4 cut(s)	33, 1176, 1203, 1281
BmrFI	CCNGG	8 cut(s)	36, 177, 531, 591, 615, 912, 1199, 1206
BmrI	ACTGGG	1 cut(s)	1187
BmsI	GCATC	3 cut(s)	563, 809, 1163
BmuI	ACTGGG	1 cut(s)	1187
BpiI	GAAGAC	1 cut(s)	131
BpmI	CTGGAG	3 cut(s)	57, 737, 873
BpuEI	CTTGAG	3 cut(s)	368, 1008, 1080
BpuMI	CCSGG	1 cut(s)	1206
Bsa29I	ATCGAT	1 cut(s)	708
BsaJI	CCNNGG	4 cut(s)	176, 315, 541, 1404
BsaXI	ACNNNNNCTCC	2 cut(s)	826, 856
Bsc4I	CCNNNNNNNGG	1 cut(s)	1198
Bse1I	ACTGG	4 cut(s)	147, 500, 1193, 1471
Bse21I	CCTNAGG	1 cut(s)	1180
Bse3DI	GCAATG	4 cut(s)	254, 651, 681, 1381
BseBI	CCWGG	7 cut(s)	36, 177, 531, 591, 615, 912, 1199
BseCI	ATCGAT	1 cut(s)	708
BseDI	CCNNGG	4 cut(s)	176, 315, 541, 1404
BseGI	GGATG	3 cut(s)	228, 857, 1415
BseLI	CCNNNNNNNGG	1 cut(s)	1198
BseMI	GCAATG	4 cut(s)	254, 651, 681, 1381
BseMII	CTCAG	3 cut(s)	248, 536, 567
BseNI	ACTGG	4 cut(s)	147, 500, 1193, 1471
BseSI	GKGCMC	1 cut(s)	1063
BseXI	GCAGC	4 cut(s)	201, 302, 649, 699
BseYI	CCCAGC	1 cut(s)	1088
BsgI	GTGCAG	2 cut(s)	804, 972
Bsh1285I	CGRYCG	1 cut(s)	11
BshFI	GGCC	3 cut(s)	650, 1367, 1478
BshVI	ATCGAT	1 cut(s)	708
BsiEI	CGRYCG	1 cut(s)	11
BsiHKAI	GWGCWC	1 cut(s)	1063
BsiSI	CCGG	1 cut(s)	1206
BslFI	GGGAC	1 cut(s)	457
BslI	CCNNNNNNNGG	1 cut(s)	1198
BsmAI	GTCTC	1 cut(s)	523
BsmFI	GGGAC	1 cut(s)	457
BsmI	GAATGC	2 cut(s)	142, 940
BsnI	GGCC	3 cut(s)	650, 1367, 1478
Bsp1286I	GDGCHC	2 cut(s)	34, 1063
Bsp1407I	TGTACA	1 cut(s)	769
Bsp143I	GATC	7 cut(s)	8, 424, 481, 490, 705, 739, 1184
BspACI	CCGC	1 cut(s)	173
BspANI	GGCC	3 cut(s)	650, 1367, 1478
BspCNI	CTCAG	3 cut(s)	247, 535, 568
BspDI	ATCGAT	1 cut(s)	708
BspLI	GGNNCC	4 cut(s)	33, 1176, 1203, 1281
BspMI	ACCTGC	1 cut(s)	994
BspPI	GGATC	2 cut(s)	734, 1192
BsrDI	GCAATG	4 cut(s)	254, 651, 681, 1381
BsrGI	TGTACA	1 cut(s)	769
BsrI	ACTGG	4 cut(s)	147, 500, 1193, 1471
BssECI	CCNNGG	4 cut(s)	176, 315, 541, 1404
BssMI	GATC	7 cut(s)	8, 424, 481, 490, 705, 739, 1184
BssT1I	CCWWGG	3 cut(s)	315, 541, 1404
Bst2UI	CCWGG	7 cut(s)	36, 177, 531, 591, 615, 912, 1199
Bst4CI	ACNGT	4 cut(s)	63, 514, 838, 961
Bst6I	CTCTTC	3 cut(s)	73, 462, 951
BstAPI	GCANNNNNTGC	1 cut(s)	671
BstAUI	TGTACA	1 cut(s)	769
BstC8I	GCNNGC	2 cut(s)	173, 281
BstDEI	CTNAG	6 cut(s)	210, 234, 329, 522, 576, 1180
BstF5I	GGATG	3 cut(s)	228, 857, 1415
BstKTI	GATC	7 cut(s)	11, 427, 484, 493, 708, 742, 1187
BstMAI	GTCTC	1 cut(s)	523
BstMBI	GATC	7 cut(s)	8, 424, 481, 490, 705, 739, 1184
BstMCI	CGRYCG	1 cut(s)	11
BstMWI	GCNNNNNNNGC	6 cut(s)	211, 268, 662, 671, 1123, 1484
BstNI	CCWGG	7 cut(s)	36, 177, 531, 591, 615, 912, 1199
BstNSI	RCATGY	3 cut(s)	910, 1390, 1450
BstSCI	CCNGG	8 cut(s)	34, 175, 529, 589, 613, 910, 1197, 1204
BstSFI	CTRYAG	1 cut(s)	513
BstSLI	GKGCMC	1 cut(s)	1063
BstV1I	GCAGC	4 cut(s)	201, 302, 649, 699
BstV2I	GAAGAC	1 cut(s)	131
BstX2I	RGATCY	2 cut(s)	490, 1184
BstYI	RGATCY	2 cut(s)	490, 1184
Bsu15I	ATCGAT	1 cut(s)	708
Bsu36I	CCTNAGG	1 cut(s)	1180
BsuRI	GGCC	3 cut(s)	650, 1367, 1478
BsuTUI	ATCGAT	1 cut(s)	708
BtgZI	GCGATG	2 cut(s)	1050, 1140
BtrI	CACGTC	1 cut(s)	1058
BtsCI	GGATG	3 cut(s)	228, 857, 1415
BtsIMutI	CAGTG	2 cut(s)	510, 810
BveI	ACCTGC	1 cut(s)	994
Cac8I	GCNNGC	2 cut(s)	173, 281
CaiI	CAGNNNCTG	1 cut(s)	959
Cfr13I	GGNCC	4 cut(s)	776, 1279, 1365, 1477
ClaI	ATCGAT	1 cut(s)	708
CsiI	ACCWGGT	1 cut(s)	529
Csp6I	GTAC	2 cut(s)	770, 924
CviQI	GTAC	2 cut(s)	770, 924
DdeI	CTNAG	6 cut(s)	210, 234, 329, 522, 576, 1180
DpnI	GATC	7 cut(s)	10, 426, 483, 492, 707, 741, 1186
DpnII	GATC	7 cut(s)	8, 424, 481, 490, 705, 739, 1184
DraIII	CACNNNGTG	1 cut(s)	1321
EaeI	YGGCCR	1 cut(s)	648
Eam1104I	CTCTTC	3 cut(s)	73, 462, 951
EarI	CTCTTC	3 cut(s)	73, 462, 951
Eco130I	CCWWGG	3 cut(s)	315, 541, 1404
Eco24I	GRGCYC	1 cut(s)	34
Eco47I	GGWCC	2 cut(s)	776, 1279
Eco57I	CTGAAG	1 cut(s)	642
Eco81I	CCTNAGG	1 cut(s)	1180
EcoO109I	RGGNCCY	1 cut(s)	1279
EcoRII	CCWGG	7 cut(s)	34, 175, 529, 589, 613, 910, 1197
EcoT14I	CCWWGG	3 cut(s)	315, 541, 1404
EcoT22I	ATGCAT	1 cut(s)	273
EcoT38I	GRGCYC	1 cut(s)	34
ErhI	CCWWGG	3 cut(s)	315, 541, 1404
FaqI	GGGAC	1 cut(s)	457
FauI	CCCGC	1 cut(s)	180
FbaI	TGATCA	1 cut(s)	424
Fnu4HI	GCNGC	4 cut(s)	215, 291, 663, 688
FokI	GGATG	3 cut(s)	215, 844, 1422
FriOI	GRGCYC	1 cut(s)	34
Fsp4HI	GCNGC	4 cut(s)	215, 291, 663, 688
FspBI	CTAG	2 cut(s)	384, 1534
GluI	GCNGC	4 cut(s)	215, 291, 663, 688
GsaI	CCCAGC	1 cut(s)	1092
GsuI	CTGGAG	3 cut(s)	57, 737, 873
HaeIII	GGCC	3 cut(s)	650, 1367, 1478
HapII	CCGG	1 cut(s)	1206
HindIII	AAGCTT	1 cut(s)	260
HinfI	GANTC	4 cut(s)	470, 578, 730, 886
HpaII	CCGG	1 cut(s)	1206
HphI	GGTGA	2 cut(s)	308, 987
Hpy166II	GTNNAC	4 cut(s)	505, 1061, 1324, 1342
Hpy188I	TCNGA	4 cut(s)	237, 577, 744, 874
Hpy188III	TCNNGA	4 cut(s)	485, 558, 754, 890
Hpy8I	GTNNAC	4 cut(s)	505, 1061, 1324, 1342
Hpy99I	CGWCG	1 cut(s)	1059
HpyAV	CCTTC	4 cut(s)	264, 688, 1017, 1089
HpyCH4III	ACNGT	4 cut(s)	63, 514, 838, 961
HpyCH4IV	ACGT	2 cut(s)	405, 1057
HpyF10VI	GCNNNNNNNGC	6 cut(s)	211, 268, 662, 671, 1123, 1484
HpyF3I	CTNAG	6 cut(s)	210, 234, 329, 522, 576, 1180
HpySE526I	ACGT	2 cut(s)	405, 1057
Ksp22I	TGATCA	1 cut(s)	424
Kzo9I	GATC	7 cut(s)	8, 424, 481, 490, 705, 739, 1184
LmnI	GCTCC	3 cut(s)	37, 598, 756
Lsp1109I	GCAGC	4 cut(s)	201, 302, 649, 699
LweI	GCATC	3 cut(s)	563, 809, 1163
MabI	ACCWGGT	1 cut(s)	529
MaeI	CTAG	2 cut(s)	384, 1534
MaeII	ACGT	2 cut(s)	405, 1057
MaeIII	GTNAC	4 cut(s)	621, 838, 896, 1301
MalI	GATC	7 cut(s)	10, 426, 483, 492, 707, 741, 1186
MboI	GATC	7 cut(s)	8, 424, 481, 490, 705, 739, 1184
MboII	GAAGA	9 cut(s)	60, 136, 320, 476, 479, 491, 500, 691, 938
MfeI	CAATTG	1 cut(s)	459
MflI	RGATCY	2 cut(s)	490, 1184
MhlI	GDGCHC	2 cut(s)	34, 1063
MluCI	AATT	9 cut(s)	21, 375, 459, 758, 795, 965, 1209, 1426, 1456
MlyI	GAGTC	3 cut(s)	479, 587, 880
MmeI	TCCRAC	1 cut(s)	606
Mph1103I	ATGCAT	1 cut(s)	273
MspA1I	CMGCKG	2 cut(s)	293, 662
MspI	CCGG	1 cut(s)	1206
MspR9I	CCNGG	8 cut(s)	36, 177, 531, 591, 615, 912, 1199, 1206
MunI	CAATTG	1 cut(s)	459
Mva1269I	GAATGC	2 cut(s)	142, 940
MvaI	CCWGG	7 cut(s)	36, 177, 531, 591, 615, 912, 1199
MwoI	GCNNNNNNNGC	6 cut(s)	211, 268, 662, 671, 1123, 1484
NciI	CCSGG	1 cut(s)	1206
NdeII	GATC	7 cut(s)	8, 424, 481, 490, 705, 739, 1184
NlaIV	GGNNCC	4 cut(s)	33, 1176, 1203, 1281
NsiI	ATGCAT	1 cut(s)	273
NspI	RCATGY	3 cut(s)	910, 1390, 1450
PciI	ACATGT	1 cut(s)	1446
PctI	GAATGC	2 cut(s)	142, 940
PfeI	GAWTC	1 cut(s)	730
PfoI	TCCNGGA	2 cut(s)	34, 1197
PkrI	GCNGC	4 cut(s)	216, 292, 664, 689
Ple19I	CGATCG	1 cut(s)	11
PleI	GAGTC	3 cut(s)	478, 586, 880
PpsI	GAGTC	3 cut(s)	478, 586, 880
PpuMI	RGGWCCY	1 cut(s)	1279
PscI	ACATGT	1 cut(s)	1446
PshBI	ATTAAT	1 cut(s)	765
Psp5II	RGGWCCY	1 cut(s)	1279
Psp6I	CCWGG	7 cut(s)	34, 175, 529, 589, 613, 910, 1197
PspFI	CCCAGC	1 cut(s)	1088
PspGI	CCWGG	7 cut(s)	34, 175, 529, 589, 613, 910, 1197
PspN4I	GGNNCC	4 cut(s)	33, 1176, 1203, 1281
PspPI	GGNCC	4 cut(s)	776, 1279, 1365, 1477
PspPPI	RGGWCCY	1 cut(s)	1279
PstNI	CAGNNNCTG	1 cut(s)	959
PsuI	RGATCY	2 cut(s)	490, 1184
PvuI	CGATCG	1 cut(s)	11
PvuII	CAGCTG	2 cut(s)	293, 662
RsaI	GTAC	2 cut(s)	771, 925
RsaNI	GTAC	2 cut(s)	770, 924
SatI	GCNGC	4 cut(s)	215, 291, 663, 688
Sau3AI	GATC	7 cut(s)	8, 424, 481, 490, 705, 739, 1184
Sau96I	GGNCC	4 cut(s)	776, 1279, 1365, 1477
SchI	GAGTC	3 cut(s)	479, 587, 880
ScrFI	CCNGG	8 cut(s)	36, 177, 531, 591, 615, 912, 1199, 1206
SduI	GDGCHC	2 cut(s)	34, 1063
SexAI	ACCWGGT	1 cut(s)	529
SfaNI	GCATC	3 cut(s)	563, 809, 1163
SfcI	CTRYAG	1 cut(s)	513
SinI	GGWCC	2 cut(s)	776, 1279
SmlI	CTYRAG	3 cut(s)	347, 1023, 1095
SmoI	CTYRAG	3 cut(s)	347, 1023, 1095
Sse9I	AATT	9 cut(s)	21, 375, 459, 758, 795, 965, 1209, 1426, 1456
SsiI	CCGC	1 cut(s)	173
SspMI	CTAG	2 cut(s)	384, 1534
StyD4I	CCNGG	8 cut(s)	34, 175, 529, 589, 613, 910, 1197, 1204
StyI	CCWWGG	3 cut(s)	315, 541, 1404
TaaI	ACNGT	4 cut(s)	63, 514, 838, 961
TaiI	ACGT	2 cut(s)	408, 1060
TaqI	TCGA	3 cut(s)	11, 708, 1376
TasI	AATT	9 cut(s)	21, 375, 459, 758, 795, 965, 1209, 1426, 1456
TatI	WGTACW	1 cut(s)	769
TfiI	GAWTC	1 cut(s)	730
TscAI	CASTG	2 cut(s)	517, 810
TseI	GCWGC	4 cut(s)	214, 290, 662, 687
TspDTI	ATGAA	6 cut(s)	17, 113, 141, 692, 1238, 1511
TspRI	CASTG	2 cut(s)	517, 810
VneI	GTGCAC	1 cut(s)	1059
VpaK11BI	GGWCC	2 cut(s)	776, 1279
VspI	ATTAAT	1 cut(s)	765
XceI	RCATGY	3 cut(s)	910, 1390, 1450
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1040
XspI	CTAG	2 cut(s)	384, 1534
Zsp2I	ATGCAT	1 cut(s)	273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.