negative regulation of mRNA metabolic process
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_1g12020 FvH4_1g12020 FvH4_1g12020 FvH4_1g12020 FvH4_1g12020 |
| malus_domestica | MD02G1134300.v1.1 MD15G1247300.v1.1 |
| prunus_persica | Prupe.7G166500_v2.0.a1 Prupe.7G166500_v2.0.a1 |
| pyrus_communis | pycom15g21740 |
| rosa_chinensis | RchiOBHm_Chr2g0099651 |
| rosa_laevigata | RLG00000016901 |
| rosa_multiflora | Rmu_sc0005120.1_g000017 |
| rosa_roxburghii | Rroxscaffold_2G00142860 |
| rosa_rugosa | Rorug02G0081700 |
| rosa_samantha | Rh2AG131300 Rh2BG134600 Rh2CG135500 Rh2DG136000 |
| rosa_wichuraiana | Rw2G010160 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 2114, 2943 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1913 |
| Acc36I | ACCTGC | 1 cut(s) | 145 |
| AccB1I | GGYRCC | 2 cut(s) | 367, 2510 |
| AccBSI | CCGCTC | 1 cut(s) | 1396 |
| AccI | GTMKAC | 1 cut(s) | 2039 |
| AccIII | TCCGGA | 1 cut(s) | 1423 |
| AcoI | YGGCCR | 5 cut(s) | 471, 1852, 2230, 2927, 3097 |
| AcsI | RAATTY | 4 cut(s) | 865, 970, 2140, 2302 |
| AcuI | CTGAAG | 7 cut(s) | 192, 276, 741, 819, 1017, 1035, 1814 |
| AdeI | CACNNNGTG | 2 cut(s) | 686, 1668 |
| AfaI | GTAC | 3 cut(s) | 468, 813, 2013 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 620, 857, 2522, 2702, 2729, 2756, 2810, 3077 |
| AflIII | ACRYGT | 1 cut(s) | 2014 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2489 |
| AjiI | CACGTC | 2 cut(s) | 1444, 2339 |
| AjnI | CCWGG | 3 cut(s) | 226, 1294, 2754 |
| AleI | CACNNNNGTG | 1 cut(s) | 2703 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 392, 424 |
| AluBI | AGCT | 6 cut(s) | 260, 340, 452, 2924, 2957, 3008 |
| AluI | AGCT | 6 cut(s) | 260, 340, 452, 2924, 2957, 3008 |
| Alw21I | GWGCWC | 1 cut(s) | 2926 |
| Alw26I | GTCTC | 4 cut(s) | 98, 116, 1136, 2883 |
| Aor13HI | TCCGGA | 1 cut(s) | 1423 |
| ApaI | GGGCCC | 1 cut(s) | 3084 |
| ApeKI | GCWGC | 5 cut(s) | 146, 185, 1834, 2241, 3012 |
| ApoI | RAATTY | 4 cut(s) | 865, 970, 2140, 2302 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 292, 552, 1290 |
| AspLEI | GCGC | 2 cut(s) | 1380, 1621 |
| AsuC2I | CCSGG | 3 cut(s) | 249, 298, 3101 |
| AsuHPI | GGTGA | 9 cut(s) | 73, 334, 635, 667, 1208, 1265, 1814, 2469, 3060 |
| AsuII | TTCGAA | 2 cut(s) | 26, 2224 |
| AsuNHI | GCTAGC | 1 cut(s) | 3008 |
| AvaII | GGWCC | 2 cut(s) | 3041, 3059 |
| AxyI | CCTNAGG | 1 cut(s) | 1911 |
| BaeGI | GKGCMC | 3 cut(s) | 254, 2515, 3084 |
| BalI | TGGCCA | 1 cut(s) | 1854 |
| BamHI | GGATCC | 2 cut(s) | 631, 1003 |
| BanI | GGYRCC | 2 cut(s) | 367, 2510 |
| BanII | GRGCYC | 2 cut(s) | 2926, 3084 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 795, 827 |
| BauI | CACGAG | 2 cut(s) | 2647, 2674 |
| BbsI | GAAGAC | 6 cut(s) | 591, 669, 747, 825, 1041, 1446 |
| Bbv12I | GWGCWC | 1 cut(s) | 2926 |
| BbvI | GCAGC | 5 cut(s) | 158, 172, 1846, 2253, 3024 |
| BceAI | ACGGC | 5 cut(s) | 16, 57, 73, 79, 2217 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 72, 106 |
| BciT130I | CCWGG | 3 cut(s) | 228, 1296, 2756 |
| BciVI | GTATCC | 2 cut(s) | 1117, 2661 |
| BcnI | CCSGG | 3 cut(s) | 249, 298, 3101 |
| BcoDI | GTCTC | 4 cut(s) | 98, 116, 1136, 2883 |
| BfaI | CTAG | 4 cut(s) | 341, 537, 2547, 3009 |
| BfmI | CTRYAG | 5 cut(s) | 576, 732, 948, 1026, 2040 |
| BfoI | RGCGCY | 1 cut(s) | 1622 |
| BfuAI | ACCTGC | 1 cut(s) | 145 |
| BfuI | GTATCC | 2 cut(s) | 1117, 2661 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 1877, 2238 |
| BglII | AGATCT | 1 cut(s) | 2498 |
| Bme1390I | CCNGG | 6 cut(s) | 228, 249, 298, 1296, 2756, 3101 |
| Bme18I | GGWCC | 2 cut(s) | 3041, 3059 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2489 |
| BmgBI | CACGTC | 2 cut(s) | 1444, 2339 |
| BmiI | GGNNCC | 7 cut(s) | 369, 555, 633, 1005, 2512, 2913, 3082 |
| BmrFI | CCNGG | 6 cut(s) | 228, 249, 298, 1296, 2756, 3101 |
| BmrI | ACTGGG | 2 cut(s) | 612, 1617 |
| BmsI | GCATC | 5 cut(s) | 284, 1294, 1598, 1795, 2563 |
| BmtI | GCTAGC | 1 cut(s) | 3012 |
| BmuI | ACTGGG | 2 cut(s) | 612, 1617 |
| BpiI | GAAGAC | 6 cut(s) | 591, 669, 747, 825, 1041, 1446 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2542, 2574 |
| BpmI | CTGGAG | 3 cut(s) | 507, 1358, 2481 |
| Bpu10I | CCTNAGC | 1 cut(s) | 237 |
| Bpu14I | TTCGAA | 2 cut(s) | 26, 2224 |
| BpuEI | CTTGAG | 1 cut(s) | 836 |
| BpuMI | CCSGG | 3 cut(s) | 249, 298, 3101 |
| BsaAI | YACGTR | 2 cut(s) | 2015, 2213 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1206 |
| BsaI | GGTCTC | 1 cut(s) | 1136 |
| BsaJI | CCNNGG | 6 cut(s) | 213, 1768, 1999, 2527, 2755, 3100 |
| BsaWI | WCCGGW | 3 cut(s) | 178, 1423, 2447 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 91, 121, 1461, 1491, 1995, 2025 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 620, 857, 2522, 2702, 2729, 2756, 2810, 3077 |
| Bse118I | RCCGGY | 3 cut(s) | 17, 58, 469 |
| Bse1I | ACTGG | 5 cut(s) | 618, 1341, 1623, 2133, 2353 |
| Bse21I | CCTNAGG | 1 cut(s) | 1911 |
| Bse3DI | GCAATG | 1 cut(s) | 19 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1206 |
| BseAI | TCCGGA | 1 cut(s) | 1423 |
| BseBI | CCWGG | 3 cut(s) | 228, 1296, 2756 |
| BseDI | CCNNGG | 6 cut(s) | 213, 1768, 1999, 2527, 2755, 3100 |
| BseGI | GGATG | 8 cut(s) | 406, 444, 904, 1348, 1432, 2137, 2444, 2554 |
| BseJI | GATNNNNATC | 1 cut(s) | 1206 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 620, 857, 2522, 2702, 2729, 2756, 2810, 3077 |
| BseMI | GCAATG | 1 cut(s) | 19 |
| BseMII | CTCAG | 6 cut(s) | 468, 594, 651, 1143, 1902, 2204 |
| BseNI | ACTGG | 5 cut(s) | 618, 1341, 1623, 2133, 2353 |
| BseSI | GKGCMC | 3 cut(s) | 254, 2515, 3084 |
| BseX3I | CGGCCG | 1 cut(s) | 471 |
| BseXI | GCAGC | 5 cut(s) | 158, 172, 1846, 2253, 3024 |
| Bsh1285I | CGRYCG | 1 cut(s) | 474 |
| BshNI | GGYRCC | 2 cut(s) | 367, 2510 |
| BsiEI | CGRYCG | 1 cut(s) | 474 |
| BsiHKAI | GWGCWC | 1 cut(s) | 2926 |
| BsiSI | CCGG | 9 cut(s) | 18, 59, 179, 248, 297, 470, 1424, 2448, 3100 |
| BslFI | GGGAC | 5 cut(s) | 256, 527, 1627, 1724, 1979 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 620, 857, 2522, 2702, 2729, 2756, 2810, 3077 |
| BsmAI | GTCTC | 4 cut(s) | 98, 116, 1136, 2883 |
| BsmBI | CGTCTC | 1 cut(s) | 116 |
| BsmFI | GGGAC | 5 cut(s) | 256, 527, 1627, 1724, 1979 |
| BsmI | GAATGC | 1 cut(s) | 487 |
| Bso31I | GGTCTC | 1 cut(s) | 1136 |
| Bsp119I | TTCGAA | 2 cut(s) | 26, 2224 |
| Bsp120I | GGGCCC | 1 cut(s) | 3080 |
| Bsp1286I | GDGCHC | 4 cut(s) | 254, 2515, 2926, 3084 |
| Bsp13I | TCCGGA | 1 cut(s) | 1423 |
| Bsp19I | CCATGG | 1 cut(s) | 1999 |
| BspCNI | CTCAG | 6 cut(s) | 469, 595, 652, 1144, 1903, 2203 |
| BspEI | TCCGGA | 1 cut(s) | 1423 |
| BspHI | TCATGA | 1 cut(s) | 1315 |
| BspLI | GGNNCC | 7 cut(s) | 369, 555, 633, 1005, 2512, 2913, 3082 |
| BspMI | ACCTGC | 1 cut(s) | 145 |
| BspOI | GCTAGC | 1 cut(s) | 3012 |
| BspT104I | TTCGAA | 2 cut(s) | 26, 2224 |
| BspT107I | GGYRCC | 2 cut(s) | 367, 2510 |
| BspTNI | GGTCTC | 1 cut(s) | 1136 |
| BsrBI | CCGCTC | 1 cut(s) | 1396 |
| BsrDI | GCAATG | 1 cut(s) | 19 |
| BsrFI | RCCGGY | 3 cut(s) | 17, 58, 469 |
| BsrI | ACTGG | 5 cut(s) | 618, 1341, 1623, 2133, 2353 |
| BssAI | RCCGGY | 3 cut(s) | 17, 58, 469 |
| BssECI | CCNNGG | 6 cut(s) | 213, 1768, 1999, 2527, 2755, 3100 |
| BssSI | CACGAG | 2 cut(s) | 2647, 2674 |
| BssT1I | CCWWGG | 1 cut(s) | 1999 |
| Bst2BI | CACGAG | 2 cut(s) | 2647, 2674 |
| Bst2UI | CCWGG | 3 cut(s) | 228, 1296, 2756 |
| Bst4CI | ACNGT | 4 cut(s) | 2439, 2981, 2993, 3113 |
| Bst6I | CTCTTC | 5 cut(s) | 543, 699, 993, 1014, 1107 |
| BstBAI | YACGTR | 2 cut(s) | 2015, 2213 |
| BstBI | TTCGAA | 2 cut(s) | 26, 2224 |
| BstC8I | GCNNGC | 9 cut(s) | 19, 1069, 1352, 1557, 1566, 1815, 2239, 2538, 3010 |
| BstDEI | CTNAG | 8 cut(s) | 237, 477, 603, 660, 1119, 1152, 1911, 2190 |
| BstDSI | CCRYGG | 1 cut(s) | 1999 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2520 |
| BstF5I | GGATG | 8 cut(s) | 406, 444, 904, 1348, 1432, 2137, 2444, 2554 |
| BstH2I | RGCGCY | 1 cut(s) | 1622 |
| BstHHI | GCGC | 2 cut(s) | 1380, 1621 |
| BstMAI | GTCTC | 4 cut(s) | 98, 116, 1136, 2883 |
| BstMCI | CGRYCG | 1 cut(s) | 474 |
| BstNI | CCWGG | 3 cut(s) | 228, 1296, 2756 |
| BstNSI | RCATGY | 5 cut(s) | 1559, 2103, 2288, 2372, 2390 |
| BstSCI | CCNGG | 6 cut(s) | 226, 247, 296, 1294, 2754, 3099 |
| BstSFI | CTRYAG | 5 cut(s) | 576, 732, 948, 1026, 2040 |
| BstSLI | GKGCMC | 3 cut(s) | 254, 2515, 3084 |
| BstV1I | GCAGC | 5 cut(s) | 158, 172, 1846, 2253, 3024 |
| BstV2I | GAAGAC | 6 cut(s) | 591, 669, 747, 825, 1041, 1446 |
| BstX2I | RGATCY | 4 cut(s) | 532, 631, 1003, 2498 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1962, 2981 |
| BstYI | RGATCY | 4 cut(s) | 532, 631, 1003, 2498 |
| BstZI | CGGCCG | 1 cut(s) | 471 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1911 |
| BsuI | GTATCC | 2 cut(s) | 1117, 2661 |
| BtgI | CCRYGG | 1 cut(s) | 1999 |
| BtgZI | GCGATG | 1 cut(s) | 1086 |
| BtrI | CACGTC | 2 cut(s) | 1444, 2339 |
| BtsCI | GGATG | 8 cut(s) | 406, 444, 904, 1348, 1432, 2137, 2444, 2554 |
| BtsI | GCAGTG | 2 cut(s) | 2251, 2284 |
| BtsIMutI | CAGTG | 9 cut(s) | 252, 311, 625, 1630, 2126, 2251, 2284, 2986, 2998 |
| BveI | ACCTGC | 1 cut(s) | 145 |
| Cac8I | GCNNGC | 9 cut(s) | 19, 1069, 1352, 1557, 1566, 1815, 2239, 2538, 3010 |
| CciI | TCATGA | 1 cut(s) | 1315 |
| CfoI | GCGC | 2 cut(s) | 1380, 1621 |
| Cfr10I | RCCGGY | 3 cut(s) | 17, 58, 469 |
| CseI | GACGC | 1 cut(s) | 2861 |
| Csp6I | GTAC | 3 cut(s) | 467, 812, 2012 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 163, 198, 1923, 1958 |
| CviQI | GTAC | 3 cut(s) | 467, 812, 2012 |
| DdeI | CTNAG | 8 cut(s) | 237, 477, 603, 660, 1119, 1152, 1911, 2190 |
| DraI | TTTAAA | 2 cut(s) | 1993, 2145 |
| DraIII | CACNNNGTG | 2 cut(s) | 686, 1668 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1913 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2489 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1913 |
| EaeI | YGGCCR | 5 cut(s) | 471, 1852, 2230, 2927, 3097 |
| EagI | CGGCCG | 1 cut(s) | 471 |
| Eam1104I | CTCTTC | 5 cut(s) | 543, 699, 993, 1014, 1107 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2489 |
| EarI | CTCTTC | 5 cut(s) | 543, 699, 993, 1014, 1107 |
| Ecl136II | GAGCTC | 1 cut(s) | 2924 |
| EclXI | CGGCCG | 1 cut(s) | 471 |
| Eco130I | CCWWGG | 1 cut(s) | 1999 |
| Eco24I | GRGCYC | 2 cut(s) | 2926, 3084 |
| Eco31I | GGTCTC | 1 cut(s) | 1136 |
| Eco47I | GGWCC | 2 cut(s) | 3041, 3059 |
| Eco52I | CGGCCG | 1 cut(s) | 471 |
| Eco53kI | GAGCTC | 1 cut(s) | 2924 |
| Eco57I | CTGAAG | 7 cut(s) | 192, 276, 741, 819, 1017, 1035, 1814 |
| Eco81I | CCTNAGG | 1 cut(s) | 1911 |
| EcoICRI | GAGCTC | 1 cut(s) | 2924 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2520 |
| EcoRI | GAATTC | 1 cut(s) | 970 |
| EcoRII | CCWGG | 3 cut(s) | 226, 1294, 2754 |
| EcoT14I | CCWWGG | 1 cut(s) | 1999 |
| EcoT22I | ATGCAT | 1 cut(s) | 1531 |
| EcoT38I | GRGCYC | 2 cut(s) | 2926, 3084 |
| ErhI | CCWWGG | 1 cut(s) | 1999 |
| Esp3I | CGTCTC | 1 cut(s) | 116 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2151, 2183 |
| FaqI | GGGAC | 5 cut(s) | 256, 527, 1627, 1724, 1979 |
| FauI | CCCGC | 2 cut(s) | 1389, 1604 |
| FauNDI | CATATG | 3 cut(s) | 2808, 2883, 3094 |
| FblI | GTMKAC | 1 cut(s) | 2039 |
| FokI | GGATG | 8 cut(s) | 413, 451, 911, 1355, 1439, 2144, 2431, 2541 |
| FriOI | GRGCYC | 2 cut(s) | 2926, 3084 |
| FspBI | CTAG | 4 cut(s) | 341, 537, 2547, 3009 |
| GlaI | GCGC | 2 cut(s) | 1379, 1620 |
| GsuI | CTGGAG | 3 cut(s) | 507, 1358, 2481 |
| HaeII | RGCGCY | 1 cut(s) | 1622 |
| HapII | CCGG | 9 cut(s) | 18, 59, 179, 248, 297, 470, 1424, 2448, 3100 |
| HgaI | GACGC | 1 cut(s) | 2861 |
| HhaI | GCGC | 2 cut(s) | 1380, 1621 |
| Hin6I | GCGC | 2 cut(s) | 1378, 1619 |
| HinP1I | GCGC | 2 cut(s) | 1378, 1619 |
| HincII | GTYRAC | 2 cut(s) | 99, 1359 |
| HindII | GTYRAC | 2 cut(s) | 99, 1359 |
| HpaII | CCGG | 9 cut(s) | 18, 59, 179, 248, 297, 470, 1424, 2448, 3100 |
| HphI | GGTGA | 9 cut(s) | 73, 334, 635, 667, 1208, 1265, 1814, 2469, 3060 |
| Hpy188I | TCNGA | 8 cut(s) | 604, 760, 838, 976, 1054, 1153, 1576, 2429 |
| Hpy99I | CGWCG | 3 cut(s) | 37, 43, 94 |
| HpyCH4III | ACNGT | 4 cut(s) | 2439, 2981, 2993, 3113 |
| HpyCH4IV | ACGT | 9 cut(s) | 516, 1443, 1667, 1753, 2014, 2212, 2311, 2338, 2848 |
| HpyF3I | CTNAG | 8 cut(s) | 237, 477, 603, 660, 1119, 1152, 1911, 2190 |
| HpySE526I | ACGT | 9 cut(s) | 516, 1443, 1667, 1753, 2014, 2212, 2311, 2338, 2848 |
| HspAI | GCGC | 2 cut(s) | 1378, 1619 |
| Kpn2I | TCCGGA | 1 cut(s) | 1423 |
| KroI | GCCGGC | 1 cut(s) | 17 |
| KroNI | GCCGGC | 1 cut(s) | 19 |
| LmnI | GCTCC | 5 cut(s) | 1375, 1552, 2545, 2911, 3005 |
| Lsp1109I | GCAGC | 5 cut(s) | 158, 172, 1846, 2253, 3024 |
| LweI | GCATC | 5 cut(s) | 284, 1294, 1598, 1795, 2563 |
| MaeI | CTAG | 4 cut(s) | 341, 537, 2547, 3009 |
| MaeII | ACGT | 9 cut(s) | 516, 1443, 1667, 1753, 2014, 2212, 2311, 2338, 2848 |
| MbiI | CCGCTC | 1 cut(s) | 1396 |
| MflI | RGATCY | 4 cut(s) | 532, 631, 1003, 2498 |
| MhlI | GDGCHC | 4 cut(s) | 254, 2515, 2926, 3084 |
| MlsI | TGGCCA | 1 cut(s) | 1854 |
| MluCI | AATT | 8 cut(s) | 865, 891, 970, 1988, 2140, 2226, 2302, 2938 |
| MluNI | TGGCCA | 1 cut(s) | 1854 |
| MlyI | GAGTC | 8 cut(s) | 100, 230, 353, 1031, 1124, 1163, 2096, 2689 |
| MmeI | TCCRAC | 2 cut(s) | 499, 2975 |
| Mox20I | TGGCCA | 1 cut(s) | 1854 |
| Mph1103I | ATGCAT | 1 cut(s) | 1531 |
| MroI | TCCGGA | 1 cut(s) | 1423 |
| MroNI | GCCGGC | 1 cut(s) | 17 |
| MroXI | GAANNNNTTC | 3 cut(s) | 292, 552, 1290 |
| MscI | TGGCCA | 1 cut(s) | 1854 |
| MseI | TTAA | 5 cut(s) | 1686, 1749, 1992, 2106, 2144 |
| Msp20I | TGGCCA | 1 cut(s) | 1854 |
| MspA1I | CMGCKG | 2 cut(s) | 452, 476 |
| MspI | CCGG | 9 cut(s) | 18, 59, 179, 248, 297, 470, 1424, 2448, 3100 |
| MspR9I | CCNGG | 6 cut(s) | 228, 249, 298, 1296, 2756, 3101 |
| Mva1269I | GAATGC | 1 cut(s) | 487 |
| MvaI | CCWGG | 3 cut(s) | 228, 1296, 2756 |
| NaeI | GCCGGC | 1 cut(s) | 19 |
| NciI | CCSGG | 3 cut(s) | 249, 298, 3101 |
| NcoI | CCATGG | 1 cut(s) | 1999 |
| NdeI | CATATG | 3 cut(s) | 2808, 2883, 3094 |
| NgoMIV | GCCGGC | 1 cut(s) | 17 |
| NheI | GCTAGC | 1 cut(s) | 3008 |
| NlaIV | GGNNCC | 7 cut(s) | 369, 555, 633, 1005, 2512, 2913, 3082 |
| NmeAIII | GCCGAG | 6 cut(s) | 145, 238, 1793, 2416, 2552, 2905 |
| NmuCI | GTSAC | 9 cut(s) | 655, 854, 2312, 2600, 2627, 2654, 2681, 2762, 2789 |
| NsiI | ATGCAT | 1 cut(s) | 1531 |
| NspI | RCATGY | 5 cut(s) | 1559, 2103, 2288, 2372, 2390 |
| NspV | TTCGAA | 2 cut(s) | 26, 2224 |
| OliI | CACNNNNGTG | 1 cut(s) | 2703 |
| PaeI | GCATGC | 1 cut(s) | 1559 |
| PagI | TCATGA | 1 cut(s) | 1315 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 1603, 2230 |
| PctI | GAATGC | 1 cut(s) | 487 |
| PdiI | GCCGGC | 1 cut(s) | 19 |
| PdmI | GAANNNNTTC | 3 cut(s) | 292, 552, 1290 |
| PfeI | GAWTC | 9 cut(s) | 572, 650, 728, 806, 841, 884, 1498, 2256, 3047 |
| PflFI | GACNNNGTC | 1 cut(s) | 2340 |
| PfoI | TCCNGGA | 2 cut(s) | 296, 1294 |
| PleI | GAGTC | 8 cut(s) | 100, 229, 352, 1030, 1123, 1162, 2095, 2688 |
| PpsI | GAGTC | 8 cut(s) | 100, 229, 352, 1030, 1123, 1162, 2095, 2688 |
| Ppu21I | YACGTR | 2 cut(s) | 2015, 2213 |
| PsiI | TTATAA | 2 cut(s) | 2114, 2943 |
| Psp124BI | GAGCTC | 1 cut(s) | 2926 |
| Psp6I | CCWGG | 3 cut(s) | 226, 1294, 2754 |
| PspGI | CCWGG | 3 cut(s) | 226, 1294, 2754 |
| PspN4I | GGNNCC | 7 cut(s) | 369, 555, 633, 1005, 2512, 2913, 3082 |
| PspOMI | GGGCCC | 1 cut(s) | 3080 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 2004, 2036 |
| PsuI | RGATCY | 4 cut(s) | 532, 631, 1003, 2498 |
| PsyI | GACNNNGTC | 1 cut(s) | 2340 |
| PvuII | CAGCTG | 1 cut(s) | 452 |
| RsaI | GTAC | 3 cut(s) | 468, 813, 2013 |
| RsaNI | GTAC | 3 cut(s) | 467, 812, 2012 |
| SacI | GAGCTC | 1 cut(s) | 2926 |
| SaqAI | TTAA | 5 cut(s) | 1686, 1749, 1992, 2106, 2144 |
| SchI | GAGTC | 8 cut(s) | 100, 230, 353, 1031, 1124, 1163, 2096, 2689 |
| ScrFI | CCNGG | 6 cut(s) | 228, 249, 298, 1296, 2756, 3101 |
| SduI | GDGCHC | 4 cut(s) | 254, 2515, 2926, 3084 |
| SfaNI | GCATC | 5 cut(s) | 284, 1294, 1598, 1795, 2563 |
| SfcI | CTRYAG | 5 cut(s) | 576, 732, 948, 1026, 2040 |
| SfuI | TTCGAA | 2 cut(s) | 26, 2224 |
| SgrAI | CRCCGGYG | 1 cut(s) | 58 |
| SinI | GGWCC | 2 cut(s) | 3041, 3059 |
| SmiI | ATTTAAAT | 1 cut(s) | 1993 |
| SmlI | CTYRAG | 1 cut(s) | 815 |
| SmoI | CTYRAG | 1 cut(s) | 815 |
| SphI | GCATGC | 1 cut(s) | 1559 |
| Sse9I | AATT | 8 cut(s) | 865, 891, 970, 1988, 2140, 2226, 2302, 2938 |
| SspI | AATATT | 2 cut(s) | 328, 1938 |
| SspMI | CTAG | 4 cut(s) | 341, 537, 2547, 3009 |
| SstI | GAGCTC | 1 cut(s) | 2926 |
| StyD4I | CCNGG | 6 cut(s) | 226, 247, 296, 1294, 2754, 3099 |
| StyI | CCWWGG | 1 cut(s) | 1999 |
| SwaI | ATTTAAAT | 1 cut(s) | 1993 |
| TaaI | ACNGT | 4 cut(s) | 2439, 2981, 2993, 3113 |
| TaiI | ACGT | 9 cut(s) | 519, 1446, 1670, 1756, 2017, 2215, 2314, 2341, 2851 |
| TaqI | TCGA | 6 cut(s) | 26, 456, 1597, 2224, 2296, 2493 |
| TasI | AATT | 8 cut(s) | 865, 891, 970, 1988, 2140, 2226, 2302, 2938 |
| TatI | WGTACW | 1 cut(s) | 811 |
| TauI | GCSGC | 6 cut(s) | 58, 269, 476, 616, 694, 928 |
| TfiI | GAWTC | 9 cut(s) | 572, 650, 728, 806, 841, 884, 1498, 2256, 3047 |
| Tru1I | TTAA | 5 cut(s) | 1686, 1749, 1992, 2106, 2144 |
| Tru9I | TTAA | 5 cut(s) | 1686, 1749, 1992, 2106, 2144 |
| TscAI | CASTG | 9 cut(s) | 259, 318, 625, 1630, 2133, 2251, 2284, 2986, 2998 |
| TseFI | GTSAC | 9 cut(s) | 655, 854, 2312, 2600, 2627, 2654, 2681, 2762, 2789 |
| TseI | GCWGC | 5 cut(s) | 146, 185, 1834, 2241, 3012 |
| Tsp45I | GTSAC | 9 cut(s) | 655, 854, 2312, 2600, 2627, 2654, 2681, 2762, 2789 |
| TspGWI | ACGGA | 3 cut(s) | 188, 428, 873 |
| TspRI | CASTG | 9 cut(s) | 259, 318, 625, 1630, 2133, 2251, 2284, 2986, 2998 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2340 |
| VpaK11BI | GGWCC | 2 cut(s) | 3041, 3059 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2520 |
| XapI | RAATTY | 4 cut(s) | 865, 970, 2140, 2302 |
| XceI | RCATGY | 5 cut(s) | 1559, 2103, 2288, 2372, 2390 |
| XmiI | GTMKAC | 1 cut(s) | 2039 |
| XmnI | GAANNNNTTC | 3 cut(s) | 292, 552, 1290 |
| XspI | CTAG | 4 cut(s) | 341, 537, 2547, 3009 |
| Zsp2I | ATGCAT | 1 cut(s) | 1531 |