Rh2BG134600

negative regulation of mRNA metabolic process

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0011510
Physical Location & Seq
Forward (+)
11467828 .. 11472076
4249 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG134600.1

Sequence Viewer

Length: 3039 bp
ATGAAAACTCGCAATGCCGGCGTTCCTAAACCGTCGACGACCTCAAAGAAAACGCCGCCGGCGAGAAAATCCGCCTCCAAAGCACAGCCGTCTCCGTCAGTAGAGACTCCTAAAACCGTCGAGACAAAGCGGACTTCTGCCAGAGCAGCCAAGCAGGTCAAGAAGACTGAAACCGCTCCCGTTACTGCTTCAAAGCGCCGTCAGTCCTCAGCCGAGGACTCGGCTGGTGGTGCTAAGGGGACACTAGGCACTAAAGTTGGTGTGGGAACTTCACCAATAGGGAGAAGGACTTCCGGGAGAGCAAAGACACCGGCATCGGTGTATGTTTCAGCACAGGCACAGTCTGCCAAGGCAAAAGGAAATGCATCGAATAAGAAGAAAAAGGTAGATATCAAGGATGTGGAGTTCACAGAGGAGGAGCTCATGGCTGAGTTTGATGGAAAACCTGCAGGGTTGGAAGAAACAGCTGTGGGGGCAGAAGTACCAGCCGTTGAGAATGTTGGAGTTTCTGCAACAGATGAAAAAGGTGCTGTCAGAGTAGAACTGGATCCTAGTGAAGATGAAGAGGATCCTATTGAGATGGAAGAATCTGTAGTTAAGGAGGTTGCAAAGTCTTCAGAGAATGTGCCGCGCTGTGATGAAGGGGATCCTGTTGAAGTAGAAGAATCTGTGATTGAGGAGGTTGCAAAGTCTTCAGAGTGTGTGCCGCTGTGTGATGAGGAGGATCCTGTTGAGAAAGAAGAATCTGTAGTTAGGGAGGCTGCAAGGTCTTCAGAGAATGAACCACCCTGTGACAAAGAAAGTCCTGTTGCGATAGAAGAATCTGTAACCGAGGAGGTTGCAAAGTCTTCAGAGAATGAACTGCCCTGTGACGAAGATCCTGTTGCCATAGAAGAATCTGTAATAGAGGAGATTGCAAGGTCTTCAGGAAATGAGCCAGCCTGTGATATAAGACAATCTGTAGTTGAGGAGGTCGCAAGGAATTCAGAGAATGAGCCGCCCTGCGCTGAAGAGGATCCTACTGAGATAGAAGAGTCTGTAATTGAGGTTGTTACAAAGTCTTCAGAAAATAGATTACCCTGCGATGTAAGAGAAATAATGGAAGTGAAAGCAGAACAGAAGGAAGAGTCTAAGGATAATGATAGTAATGAGGAGACCTCTTTTGAGCCTGCTAACAAGGTACAAAATGACAAAGCAAGGTTACAAGGAGAAGATACTTATCTTCCAAAAGAGATGTATGATGTTGATGAGGAAATGGAATATGGTGAGAAAATTGATCTTGGAGAACATGGAGAGGAAGAACTTCCGGGAGATGATGCAGAGGATCATGAAGAAGAAACTGAGACATTGGAGGATGAATGCAAGCAGTTGACAGCCATCGCAAAGGAGCGCAAGATAAAGAAAGAGCGGGAGGTATTTCTTGATGGTCTTGATCCGGATGTTGAGGAGGAAGACGTGAGAAGGGTCTTTGAGAGGATTGGAGGGATAGTTGAGGTTAGGTTACAGAAGAATCCTTCAACTAATAAGAATAAGGGTTATGCATATGTGGAGTTCAAAGACAAGGAGCATGTGAGGCGTGCTTTGTCTGAAATGAAAAACCCTGCTATTCGAGGGAAACGATGTGGGACAGCACCCAGTGAGGACAATACCACGTTGTTCATAGGTAACATCTGCAATACGTGGACAAAGGACGCTATTAAGCAAAAGCTAAAGGATTATGAGGTTGAAGGTGTTGAGAACATAAACCTTGTCCTGGATATTCAACGTGAAGGGTTGAGCCGAGGTTTTGCATTTGTTGAGTTCTCTTGTCATGGTGATGCTATGCTTGCATACAAGAGGCTTCAGCAGTCTGATGTTATATTTGGCCACCCTGAAAGGACTGCCAAAGTGGCCTTTGCTGAACCTATATGTGAGCCTGACCCTGAGGTCATGGCCCAAGTGAAGTCAATATTTGTGGATGGGCTTCCACCTCATTGGGATGAGAAACAGGTTAGAGAGCAATTTAAATGCTATGGAGAAATATTACGTGTTGTTCTGGCCCGAAATATGTCTACAGCCAAGCGGAAAGATTTTGGATTTGTTGATTTCTCTAGCCACGAGTCTGCTGTGGCATGTGTTAATGTTATAAACAATACACCACTGAGTGATGGGCATTTAAAGATAAAAGTGAAAGCAAGACTTTCAAATCCTTTGCCTAAAACTCAGGCTGTGAAGGGTGGAATACGTGGTGGATTTCGAATTGGCCGTGGTGGCAGCGGTGTTTCAAGATTTGGTAGGGATTTTGGTCGCAGTGGACACACTTCCAATCGTGCAAATTTCCAACATGACAGACATTTTTATGACGGTGGACGTGGTCAAACTGCGAGGATGGGTTTCAATCAGCATAACTATGATTATCCATATGCTGAGTTTTGTGGACGAGGGGGCAGAAGGGGCTTTTTTAGAGGTGGTCAATTTTCATCTGGTGGAGGTTCTGGAGTTGCTTCCCCATCACCAAGACCTTATGTTGATAGATCTTCGCATGGTGCCCCTGATAGAGGGCGAGGTATGCCTGCTCCTTTTAGGAGGCATCCTTATTCTCCAGAAGGACACTTTGATGGGCCACATATGAGGGGTCACTTTGATGGGCCACACATGAGGGGTCACTTTGATGGGCCACACATGGGGGGTCATTTTGATGGGCCACACATGGGTGGTCACTTTGATGGGCCACACATTGGTGGTCACTTTGATGGGCCACACATAGGTGGTCACTTTGATGAACCTTCTTTTTATGATGAACGCGATAGAACACAAGGCATCAAGCGCCCATTTCACATGAGAGACTATGATCCTGATTACTTGGAGCCTAGTAGACATCGGCCACGATTGAATTATAATGATCCAACAGCTTCATTTCGCGGAAACCATTATAGTGATACTTATGGAGCTGGTAGCAGTCTCTACCCTCATGAATATTATGGTCCTGAATCTCATTATGGTCCACATTCATCTTATTATGGGCGCAATCAATCATATGGTGGGGGTCGCTACTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005737 GO:0006417 GO:0006950 GO:0006952 GO:0006955 GO:0007623 GO:0008143 GO:0008150 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0016020 GO:0017148 GO:0019219 GO:0019222 GO:0030425 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031329 GO:0031330 GO:0032268 GO:0032269 GO:0032270 GO:0032991 GO:0034097 GO:0034248 GO:0034249 GO:0034250 GO:0034341 GO:0036477 GO:0042221 GO:0042995 GO:0043005 GO:0043025 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043487 GO:0043488 GO:0043489 GO:0044297 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044463 GO:0044464 GO:0045087 GO:0045727 GO:0045934 GO:0048027 GO:0048255 GO:0048511 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051247 GO:0051248 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0070717 GO:0070887 GO:0070934 GO:0070937 GO:0071013 GO:0071204 GO:0071310 GO:0071345 GO:0071346 GO:0080090 GO:0090365 GO:0090367 GO:0097159 GO:0097447 GO:0097452 GO:0097458 GO:0120025 GO:0120038 GO:1901363 GO:1902369 GO:1902373 GO:1902494 GO:1903311 GO:1903312 GO:1990635 GO:1990904 GO:2000112 GO:2000113
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

1012

Amino Acids

112.07

Weight (kDa)

5.25

Isoelectric Point (pI)

60.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 472 - 540 1.5e-15 RNA recognition motif
RRM_1 PF00076 552 - 616 5e-07 RNA recognition motif
RRM_1 PF00076 650 - 714 3.5e-12 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 2126, 2877
AasI GACNNNNNNGTC 1 cut(s) 1925
Acc36I ACCTGC 2 cut(s) 145, 454
AccB1I GGYRCC 1 cut(s) 2525
AccB7I CCANNNNNTGG 1 cut(s) 2717
AccBSI CCGCTC 2 cut(s) 176, 1408
AccI GTMKAC 3 cut(s) 35, 2051, 2854
AccII CGCG 3 cut(s) 631, 2784, 2901
AccIII TCCGGA 1 cut(s) 1435
AcoI YGGCCR 3 cut(s) 1864, 2242, 2861
AcsI RAATTY 2 cut(s) 982, 2314
AcuI CTGAAG 8 cut(s) 600, 678, 756, 834, 909, 1029, 1047, 1826
AdeI CACNNNGTG 3 cut(s) 791, 1637, 2144
AfaI GTAC 2 cut(s) 483, 1182
AfiI CCNNNNNNNGG 6 cut(s) 1753, 2537, 2663, 2690, 2717, 2744
AflIII ACRYGT 1 cut(s) 2026
AjiI CACGTC 2 cut(s) 1456, 2351
AjnI CCWGG 1 cut(s) 1752
AleI CACNNNNGTG 3 cut(s) 2691, 2718, 2745
AloI GAACNNNNNNTCC 2 cut(s) 389, 421
AluBI AGCT 5 cut(s) 421, 467, 1708, 2891, 2930
AluI AGCT 5 cut(s) 421, 467, 1708, 2891, 2930
Alw21I GWGCWC 1 cut(s) 423
Alw26I GTCTC 7 cut(s) 96, 98, 116, 1148, 1337, 2817, 2945
Aor13HI TCCGGA 1 cut(s) 1435
ApeKI GCWGC 3 cut(s) 146, 761, 2253
ApoI RAATTY 2 cut(s) 982, 2314
Asp700I GAANNNNTTC 2 cut(s) 289, 1302
AspLEI GCGC 6 cut(s) 198, 633, 1007, 1392, 2808, 3006
AsuC2I CCSGG 2 cut(s) 295, 1308
AsuHPI GGTGA 4 cut(s) 264, 1277, 1826, 2484
AsuII TTCGAA 1 cut(s) 2236
AvaII GGWCC 2 cut(s) 2963, 2981
AxyI CCTNAGG 1 cut(s) 1923
BaeGI GKGCMC 1 cut(s) 2530
BalI TGGCCA 1 cut(s) 1866
BamHI GGATCC 5 cut(s) 547, 568, 646, 724, 1015
BanI GGYRCC 1 cut(s) 2525
BanII GRGCYC 1 cut(s) 423
BauI CACGAG 1 cut(s) 2096
BbsI GAAGAC 8 cut(s) 170, 606, 684, 762, 840, 915, 1053, 1458
Bbv12I GWGCWC 1 cut(s) 423
BbvCI CCTCAGC 1 cut(s) 208
BbvI GCAGC 3 cut(s) 158, 748, 2265
BceAI ACGGC 4 cut(s) 73, 183, 473, 2229
BcgI CGANNNNNNTGC 2 cut(s) 821, 855
BciT130I CCWGG 1 cut(s) 1754
BcnI CCSGG 2 cut(s) 295, 1308
BcoDI GTCTC 7 cut(s) 96, 98, 116, 1148, 1337, 2817, 2945
BfaI CTAG 4 cut(s) 245, 552, 2091, 2850
BfmI CTRYAG 5 cut(s) 447, 591, 747, 960, 2052
BfoI RGCGCY 2 cut(s) 199, 2809
BfuAI ACCTGC 2 cut(s) 145, 454
BglI GCCNNNNNGGC 2 cut(s) 1889, 2250
BglII AGATCT 1 cut(s) 2513
BisI GCNGC 7 cut(s) 56, 147, 629, 707, 762, 998, 2254
BlsI GCNGC 7 cut(s) 57, 148, 630, 708, 763, 999, 2255
Bme1390I CCNGG 3 cut(s) 295, 1308, 1754
Bme18I GGWCC 2 cut(s) 2963, 2981
BmgBI CACGTC 2 cut(s) 1456, 2351
BmiI GGNNCC 7 cut(s) 549, 570, 648, 726, 1017, 2527, 2847
BmrFI CCNGG 3 cut(s) 295, 1308, 1754
BmrI ACTGGG 1 cut(s) 1629
BmsI GCATC 6 cut(s) 323, 374, 1306, 1807, 2578, 2808
BmuI ACTGGG 1 cut(s) 1629
BpiI GAAGAC 8 cut(s) 170, 606, 684, 762, 840, 915, 1053, 1458
BplI GAGNNNNNCTC 2 cut(s) 1142, 1174
BpmI CTGGAG 2 cut(s) 2496, 2565
Bpu10I CCTNAGC 2 cut(s) 208, 234
Bpu14I TTCGAA 1 cut(s) 2236
BpuMI CCSGG 2 cut(s) 295, 1308
BsaAI YACGTR 3 cut(s) 1680, 2027, 2225
BsaBI GATNNNNATC 1 cut(s) 1218
BsaI GGTCTC 1 cut(s) 1148
BsaJI CCNNGG 5 cut(s) 213, 348, 831, 1780, 2245
BsaWI WCCGGW 1 cut(s) 1435
BsaXI ACNNNNNCTCC 2 cut(s) 1473, 1503
Bsc4I CCNNNNNNNGG 6 cut(s) 1753, 2537, 2663, 2690, 2717, 2744
Bse118I RCCGGY 3 cut(s) 17, 58, 310
Bse1I ACTGG 2 cut(s) 549, 1635
Bse21I CCTNAGG 1 cut(s) 1923
Bse3DI GCAATG 1 cut(s) 19
Bse8I GATNNNNATC 1 cut(s) 1218
BseAI TCCGGA 1 cut(s) 1435
BseBI CCWGG 1 cut(s) 1754
BseDI CCNNGG 5 cut(s) 213, 348, 831, 1780, 2245
BseGI GGATG 7 cut(s) 403, 1360, 1444, 1963, 1984, 2373, 2569
BseJI GATNNNNATC 1 cut(s) 1218
BseLI CCNNNNNNNGG 6 cut(s) 1753, 2537, 2663, 2690, 2717, 2744
BseMI GCAATG 1 cut(s) 19
BseMII CTCAG 8 cut(s) 222, 420, 1014, 1332, 1914, 2132, 2216, 2397
BseNI ACTGG 2 cut(s) 549, 1635
BseRI GAGGAG 9 cut(s) 428, 431, 692, 734, 848, 923, 983, 1166, 1460
BseSI GKGCMC 1 cut(s) 2530
BseXI GCAGC 3 cut(s) 158, 748, 2265
Bsh1236I CGCG 3 cut(s) 631, 2784, 2901
BshNI GGYRCC 1 cut(s) 2525
BsiHKAI GWGCWC 1 cut(s) 423
BsiSI CCGG 6 cut(s) 18, 59, 294, 311, 1307, 1436
BslFI GGGAC 2 cut(s) 253, 1639
BslI CCNNNNNNNGG 6 cut(s) 1753, 2537, 2663, 2690, 2717, 2744
BsmAI GTCTC 7 cut(s) 96, 98, 116, 1148, 1337, 2817, 2945
BsmBI CGTCTC 1 cut(s) 96
BsmFI GGGAC 2 cut(s) 253, 1639
BsmI GAATGC 1 cut(s) 1364
Bso31I GGTCTC 1 cut(s) 1148
Bsp119I TTCGAA 1 cut(s) 2236
Bsp1286I GDGCHC 2 cut(s) 423, 2530
Bsp13I TCCGGA 1 cut(s) 1435
BspCNI CTCAG 8 cut(s) 221, 421, 1015, 1333, 1915, 2133, 2215, 2398
BspEI TCCGGA 1 cut(s) 1435
BspFNI CGCG 3 cut(s) 631, 2784, 2901
BspHI TCATGA 2 cut(s) 1327, 2950
BspLI GGNNCC 7 cut(s) 549, 570, 648, 726, 1017, 2527, 2847
BspMAI CTGCAG 1 cut(s) 451
BspMI ACCTGC 2 cut(s) 145, 454
BspT104I TTCGAA 1 cut(s) 2236
BspT107I GGYRCC 1 cut(s) 2525
BspTNI GGTCTC 1 cut(s) 1148
BsrBI CCGCTC 2 cut(s) 176, 1408
BsrDI GCAATG 1 cut(s) 19
BsrFI RCCGGY 3 cut(s) 17, 58, 310
BsrI ACTGG 2 cut(s) 549, 1635
BssAI RCCGGY 3 cut(s) 17, 58, 310
BssECI CCNNGG 5 cut(s) 213, 348, 831, 1780, 2245
BssSI CACGAG 1 cut(s) 2096
BssT1I CCWWGG 1 cut(s) 348
Bst2BI CACGAG 1 cut(s) 2096
Bst2UI CCWGG 1 cut(s) 1754
Bst4CI ACNGT 4 cut(s) 33, 118, 342, 2345
Bst6I CTCTTC 4 cut(s) 558, 1005, 1026, 1119
BstAPI GCANNNNNTGC 1 cut(s) 344
BstBAI YACGTR 3 cut(s) 1680, 2027, 2225
BstBI TTCGAA 1 cut(s) 2236
BstC8I GCNNGC 8 cut(s) 19, 60, 939, 1170, 1364, 1578, 1827, 2553
BstDSI CCRYGG 1 cut(s) 2245
BstENI CCTNNNNNAGG 1 cut(s) 2535
BstF5I GGATG 7 cut(s) 403, 1360, 1444, 1963, 1984, 2373, 2569
BstFNI CGCG 3 cut(s) 631, 2784, 2901
BstH2I RGCGCY 2 cut(s) 199, 2809
BstHHI GCGC 6 cut(s) 198, 633, 1007, 1392, 2808, 3006
BstMAI GTCTC 7 cut(s) 96, 98, 116, 1148, 1337, 2817, 2945
BstNI CCWGG 1 cut(s) 1754
BstNSI RCATGY 2 cut(s) 1571, 2115
BstSCI CCNGG 3 cut(s) 293, 1306, 1752
BstSFI CTRYAG 5 cut(s) 447, 591, 747, 960, 2052
BstSLI GKGCMC 1 cut(s) 2530
BstUI CGCG 3 cut(s) 631, 2784, 2901
BstV1I GCAGC 3 cut(s) 158, 748, 2265
BstV2I GAAGAC 8 cut(s) 170, 606, 684, 762, 840, 915, 1053, 1458
BstX2I RGATCY 7 cut(s) 547, 568, 646, 724, 877, 1015, 2513
BstXI CCANNNNNNTGG 1 cut(s) 1974
BstYI RGATCY 7 cut(s) 547, 568, 646, 724, 877, 1015, 2513
Bsu36I CCTNAGG 1 cut(s) 1923
BtgI CCRYGG 1 cut(s) 2245
BtgZI GCGATG 2 cut(s) 1098, 1363
BtrI CACGTC 2 cut(s) 1456, 2351
BtsCI GGATG 7 cut(s) 403, 1360, 1444, 1963, 1984, 2373, 2569
BtsI GCAGTG 1 cut(s) 2296
BtsIMutI CAGTG 3 cut(s) 1642, 2138, 2296
BveI ACCTGC 2 cut(s) 145, 454
Cac8I GCNNGC 8 cut(s) 19, 60, 939, 1170, 1364, 1578, 1827, 2553
CciI TCATGA 2 cut(s) 1327, 2950
CfoI GCGC 6 cut(s) 198, 633, 1007, 1392, 2808, 3006
Cfr10I RCCGGY 3 cut(s) 17, 58, 310
CseI GACGC 1 cut(s) 1700
Csp6I GTAC 2 cut(s) 482, 1181
CspCI CAANNNNNGTGG 2 cut(s) 1935, 1970
CviQI GTAC 2 cut(s) 482, 1181
DraI TTTAAA 2 cut(s) 2005, 2157
DraIII CACNNNGTG 3 cut(s) 791, 1637, 2144
DrdI GACNNNNNNGTC 1 cut(s) 1925
DseDI GACNNNNNNGTC 1 cut(s) 1925
EaeI YGGCCR 3 cut(s) 1864, 2242, 2861
Eam1104I CTCTTC 4 cut(s) 558, 1005, 1026, 1119
EarI CTCTTC 4 cut(s) 558, 1005, 1026, 1119
EciI GGCGGA 1 cut(s) 61
Ecl136II GAGCTC 1 cut(s) 421
Eco130I CCWWGG 1 cut(s) 348
Eco24I GRGCYC 1 cut(s) 423
Eco31I GGTCTC 1 cut(s) 1148
Eco32I GATATC 1 cut(s) 391
Eco47I GGWCC 2 cut(s) 2963, 2981
Eco53kI GAGCTC 1 cut(s) 421
Eco57I CTGAAG 8 cut(s) 600, 678, 756, 834, 909, 1029, 1047, 1826
Eco81I CCTNAGG 1 cut(s) 1923
EcoICRI GAGCTC 1 cut(s) 421
EcoNI CCTNNNNNAGG 1 cut(s) 2535
EcoRI GAATTC 1 cut(s) 982
EcoRII CCWGG 1 cut(s) 1752
EcoRV GATATC 1 cut(s) 391
EcoT14I CCWWGG 1 cut(s) 348
EcoT22I ATGCAT 2 cut(s) 367, 1543
EcoT38I GRGCYC 1 cut(s) 423
ErhI CCWWGG 1 cut(s) 348
Esp3I CGTCTC 1 cut(s) 96
FalI AAGNNNNNCTT 2 cut(s) 2163, 2195
FaqI GGGAC 2 cut(s) 253, 1639
FauI CCCGC 1 cut(s) 1401
FauNDI CATATG 4 cut(s) 1543, 2401, 2607, 3016
FblI GTMKAC 3 cut(s) 35, 2051, 2854
Fnu4HI GCNGC 7 cut(s) 56, 147, 629, 707, 762, 998, 2254
FokI GGATG 7 cut(s) 410, 1367, 1451, 1970, 1991, 2380, 2556
FriOI GRGCYC 1 cut(s) 423
Fsp4HI GCNGC 7 cut(s) 56, 147, 629, 707, 762, 998, 2254
FspBI CTAG 4 cut(s) 245, 552, 2091, 2850
GlaI GCGC 6 cut(s) 197, 632, 1006, 1391, 2807, 3005
GluI GCNGC 7 cut(s) 56, 147, 629, 707, 762, 998, 2254
GsuI CTGGAG 2 cut(s) 2496, 2565
HaeII RGCGCY 2 cut(s) 199, 2809
HapII CCGG 6 cut(s) 18, 59, 294, 311, 1307, 1436
HgaI GACGC 1 cut(s) 1700
HhaI GCGC 6 cut(s) 198, 633, 1007, 1392, 2808, 3006
Hin6I GCGC 6 cut(s) 196, 631, 1005, 1390, 2806, 3004
HinP1I GCGC 6 cut(s) 196, 631, 1005, 1390, 2806, 3004
HincII GTYRAC 2 cut(s) 36, 1371
HindII GTYRAC 2 cut(s) 36, 1371
HpaII CCGG 6 cut(s) 18, 59, 294, 311, 1307, 1436
HphI GGTGA 4 cut(s) 264, 1277, 1826, 2484
Hpy188I TCNGA 9 cut(s) 536, 619, 697, 775, 853, 988, 1066, 1588, 1852
Hpy99I CGWCG 3 cut(s) 37, 40, 122
HpyCH4III ACNGT 4 cut(s) 33, 118, 342, 2345
HpyCH4IV ACGT 7 cut(s) 1455, 1652, 1679, 1765, 2026, 2224, 2350
HpySE526I ACGT 7 cut(s) 1455, 1652, 1679, 1765, 2026, 2224, 2350
HspAI GCGC 6 cut(s) 196, 631, 1005, 1390, 2806, 3004
Kpn2I TCCGGA 1 cut(s) 1435
KroI GCCGGC 2 cut(s) 17, 58
KroNI GCCGGC 2 cut(s) 19, 60
LmnI GCTCC 7 cut(s) 181, 418, 1387, 1564, 2560, 2845, 2927
Lsp1109I GCAGC 3 cut(s) 158, 748, 2265
LweI GCATC 6 cut(s) 323, 374, 1306, 1807, 2578, 2808
MaeI CTAG 4 cut(s) 245, 552, 2091, 2850
MaeII ACGT 7 cut(s) 1455, 1652, 1679, 1765, 2026, 2224, 2350
MbiI CCGCTC 2 cut(s) 176, 1408
MflI RGATCY 7 cut(s) 547, 568, 646, 724, 877, 1015, 2513
MhlI GDGCHC 2 cut(s) 423, 2530
MlsI TGGCCA 1 cut(s) 1866
MluCI AATT 8 cut(s) 982, 1041, 1272, 2000, 2238, 2314, 2453, 2872
MluNI TGGCCA 1 cut(s) 1866
MlyI GAGTC 5 cut(s) 100, 212, 1043, 1136, 2108
MmeI TCCRAC 4 cut(s) 435, 481, 2344, 2909
Mox20I TGGCCA 1 cut(s) 1866
Mph1103I ATGCAT 2 cut(s) 367, 1543
MreI CGCCGGCG 1 cut(s) 58
MroI TCCGGA 1 cut(s) 1435
MroNI GCCGGC 2 cut(s) 17, 58
MroXI GAANNNNTTC 2 cut(s) 289, 1302
MscI TGGCCA 1 cut(s) 1866
MseI TTAA 5 cut(s) 597, 1698, 2004, 2118, 2156
Msp20I TGGCCA 1 cut(s) 1866
MspA1I CMGCKG 3 cut(s) 467, 709, 2256
MspI CCGG 6 cut(s) 18, 59, 294, 311, 1307, 1436
MspR9I CCNGG 3 cut(s) 295, 1308, 1754
Mva1269I GAATGC 1 cut(s) 1364
MvaI CCWGG 1 cut(s) 1754
MvnI CGCG 3 cut(s) 631, 2784, 2901
NaeI GCCGGC 2 cut(s) 19, 60
NciI CCSGG 2 cut(s) 295, 1308
NdeI CATATG 4 cut(s) 1543, 2401, 2607, 3016
NgoMIV GCCGGC 2 cut(s) 17, 58
NlaIV GGNNCC 7 cut(s) 549, 570, 648, 726, 1017, 2527, 2847
NmeAIII GCCGAG 3 cut(s) 200, 238, 1805
NmuCI GTSAC 7 cut(s) 791, 869, 2615, 2642, 2696, 2723, 2750
NsiI ATGCAT 2 cut(s) 367, 1543
NspI RCATGY 2 cut(s) 1571, 2115
NspV TTCGAA 1 cut(s) 2236
OliI CACNNNNGTG 3 cut(s) 2691, 2718, 2745
PagI TCATGA 2 cut(s) 1327, 2950
PcsI WCGNNNNNNNCGW 3 cut(s) 59, 1615, 2242
PctI GAATGC 1 cut(s) 1364
PdiI GCCGGC 2 cut(s) 19, 60
PdmI GAANNNNTTC 2 cut(s) 289, 1302
PfeI GAWTC 7 cut(s) 587, 665, 743, 821, 896, 1510, 2969
PflFI GACNNNGTC 1 cut(s) 2352
PflMI CCANNNNNTGG 1 cut(s) 2717
PfoI TCCNGGA 3 cut(s) 293, 1306, 1752
PkrI GCNGC 7 cut(s) 57, 148, 630, 708, 763, 999, 2255
PleI GAGTC 5 cut(s) 100, 212, 1042, 1135, 2107
PpsI GAGTC 5 cut(s) 100, 212, 1042, 1135, 2107
Ppu21I YACGTR 3 cut(s) 1680, 2027, 2225
PsiI TTATAA 2 cut(s) 2126, 2877
Psp124BI GAGCTC 1 cut(s) 423
Psp6I CCWGG 1 cut(s) 1752
PspGI CCWGG 1 cut(s) 1752
PspN4I GGNNCC 7 cut(s) 549, 570, 648, 726, 1017, 2527, 2847
PstI CTGCAG 1 cut(s) 451
PsuI RGATCY 7 cut(s) 547, 568, 646, 724, 877, 1015, 2513
PsyI GACNNNGTC 1 cut(s) 2352
PvuII CAGCTG 1 cut(s) 467
RsaI GTAC 2 cut(s) 483, 1182
RsaNI GTAC 2 cut(s) 482, 1181
SacI GAGCTC 1 cut(s) 423
SalI GTCGAC 1 cut(s) 34
SaqAI TTAA 5 cut(s) 597, 1698, 2004, 2118, 2156
SatI GCNGC 7 cut(s) 56, 147, 629, 707, 762, 998, 2254
SbfI CCTGCAGG 1 cut(s) 451
SchI GAGTC 5 cut(s) 100, 212, 1043, 1136, 2108
ScrFI CCNGG 3 cut(s) 295, 1308, 1754
SdaI CCTGCAGG 1 cut(s) 451
SduI GDGCHC 2 cut(s) 423, 2530
SfaNI GCATC 6 cut(s) 323, 374, 1306, 1807, 2578, 2808
SfcI CTRYAG 5 cut(s) 447, 591, 747, 960, 2052
SfuI TTCGAA 1 cut(s) 2236
SgrAI CRCCGGYG 1 cut(s) 58
SgrDI CGTCGACG 1 cut(s) 34
SinI GGWCC 2 cut(s) 2963, 2981
SmiI ATTTAAAT 1 cut(s) 2005
Sse8387I CCTGCAGG 1 cut(s) 451
Sse9I AATT 8 cut(s) 982, 1041, 1272, 2000, 2238, 2314, 2453, 2872
SspI AATATT 3 cut(s) 1950, 2022, 2957
SspMI CTAG 4 cut(s) 245, 552, 2091, 2850
SstI GAGCTC 1 cut(s) 423
StyD4I CCNGG 3 cut(s) 293, 1306, 1752
StyI CCWWGG 1 cut(s) 348
SwaI ATTTAAAT 1 cut(s) 2005
TaaI ACNGT 4 cut(s) 33, 118, 342, 2345
TaiI ACGT 7 cut(s) 1458, 1655, 1682, 1768, 2029, 2227, 2353
TaqI TCGA 5 cut(s) 35, 120, 368, 1609, 2236
TasI AATT 8 cut(s) 982, 1041, 1272, 2000, 2238, 2314, 2453, 2872
TauI GCSGC 4 cut(s) 58, 631, 709, 1000
TfiI GAWTC 7 cut(s) 587, 665, 743, 821, 896, 1510, 2969
Tru1I TTAA 5 cut(s) 597, 1698, 2004, 2118, 2156
Tru9I TTAA 5 cut(s) 597, 1698, 2004, 2118, 2156
TscAI CASTG 3 cut(s) 1642, 2145, 2296
TseFI GTSAC 7 cut(s) 791, 869, 2615, 2642, 2696, 2723, 2750
TseI GCWGC 3 cut(s) 146, 761, 2253
Tsp45I GTSAC 7 cut(s) 791, 869, 2615, 2642, 2696, 2723, 2750
TspGWI ACGGA 1 cut(s) 84
TspRI CASTG 3 cut(s) 1642, 2145, 2296
Tth111I GACNNNGTC 1 cut(s) 2352
Van91I CCANNNNNTGG 1 cut(s) 2717
VpaK11BI GGWCC 2 cut(s) 2963, 2981
XagI CCTNNNNNAGG 1 cut(s) 2535
XapI RAATTY 2 cut(s) 982, 2314
XceI RCATGY 2 cut(s) 1571, 2115
XmiI GTMKAC 3 cut(s) 35, 2051, 2854
XmnI GAANNNNTTC 2 cut(s) 289, 1302
XspI CTAG 4 cut(s) 245, 552, 2091, 2850
Zsp2I ATGCAT 2 cut(s) 367, 1543
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.