RLG00000016901

negative regulation of mRNA metabolic process

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0011510
Physical Location & Seq
Forward (+)
11081282 .. 11085587
4306 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016901

Sequence Viewer

Length: 3042 bp
ATGAAAACTCGCAATGCCGGCGTTCCTAAACCTTCGCCAACCGCAAAGAAAACGCCGCCGGCGAGAAAATCCGCCTCCAAAGCACAGCCGTCTCCGTCAGTAGAGACTCCTAAAACCGTCGAGACAAAGAGGACTTCTGCCAGAGCAGCCAAGCAGGTCAAGAAGACTGAAACCGCTCCCGTTACTGCTTCAAAGCGCTGTCAATCCTCAGCCGAGGACTCCGCTGGTGGTGCTAAGGGGACACTAGGCACTAAAGTTGGTGTGGGAACTTCACCAATAGGGAGAAGGACTTCCGGGAGAGCAAAGACACCGGCATCGGTGTATGTTTCAGCACAGGCACAATCTGCCAAGGCGAAAGGAAATGCATCGAATAAGAAGAAAAAGGTAGATATCAAGGATGTGGAGTTCACAGAGGAGGAGGTGGTCATGACTGGGTTTGATGGAAAACCTGCTGGGTTGGAAGAAACAGCTGTGGGGGCAGAAGTACCAGCCGTTGAGAATGTTGGAGTTTCTGCAACAGATGAAAAAGGTGCTGTCAGAGTAGAACTGGATCCTAGTGAAGATGAAGAGGATCCTATTGAGATGGAAGAATCTGTAGTTAAGGAGCTTGCAAAGTCTTCAGAGAATGTGCCGCGCTGTGATGAAGGGGATCCTGTCGAAGTAGAAGAATCTGTGATTGACGAGGTTGCAAAGTCTTCAGAGTGTGTGCCGCTGTGTGATGAGGAGGATCCTGTTGAGAAAGAAGAATCTGTAGTTGGGGAGGTTGCAAGGTCTTCAGAGAATGAACCACCCTGTGACGAAGAGAGTCCTGTTGCGATAGGAGAATCTGTAACCGAGGAGGTAGCAAAGTCTTTAGAGAATGAACTGCCCTGTGACGAAGATCCTGTTGCGATGGAAGAATCTGTAATAGAGGAGATTGCAAGGTCTTCAGGAAATGAGCCGGACTGTGATATAAGACAATCTGTAGTTGAGGAGGTCGCAAGGAATTCAGAGAATGAGCCGCCCTGCGCTGAAGAGGATCCTACTGAGATAGAAGAGTCTGTAATTGAGGTTGTTACAAAGTCTTCAGAAAATAGACTACCCTGCAATGTAAGAGAAAGAATGGAAGTGAAAGCAGAACAGAAGGAAGAGTCTAAGGATAATGATAGTAATGAGGAGACCTCTTTTGAGCCTGCTAACAAGGTACAAAATGACAAAGCGAGGTTACAAGGAGAAGATACTGATCTTCCAAAAGAGATGTATGATGTTGATGAGGAAATGGAGTATGGTGAGAAAATTGATCTTGGAGAACATGGAGAGGAAGAACTTCCGGGAGATGATGCAGAGGATCATGAAGAAGAAACTGAGACATTGGAGGATGAACGCAAGCAGTTGACAGCCATCGCAAAGGAGCGCAAGATAAAGAAAGAGCGGGAGGTATTTCTTGATGGTCTTGATCCAGATGTTGAGGAGGAAGACGTGAGAAGGGTCTTTGAGAGGATTGGAGGGATAGTTGAGGTTAGGTTACAGAAGAATCCTTCAACAAATAAGAATAAGGGTTATGCATATGTGGAGTTCAAAGATAAGGAGCATGTGAGGCGTGCTTTGTCTGAAATGAAAAACCCTGCTATTCGAGGGAAACGATGTGGGACAGCACCCAGTGAGGACAATACCACGTTGTTCATAGGTAACATCTGCAATACGTGGACAAAGGAAGCTATTAAACAAAAACTAAAGGATTATGAGGTTGAAGGTGTTGAGAACATAAACCTTGTCCCGGATATTCAACATGAAGGGTTGAGCCGAGGTTTTGCATTTGTTGAGTTCTCTTGTCATGGTGATGCTATGCTTGCATACAAGAGGCTTCAGCAGCCTGATGTTATATTTGGCCACCCTGAAAGGACTGCCAAAGTGGCCTTTGCTGAACCTATATGTGCGCCTGACCCTGAGGTCATGGCCCAAGTGAAGTCAATATTTGTGGACGGGCTTCCACCTCATTGGGATGAGAAACAGGTTAGAGAGCAATTTAAATGCTATGGAGAAATATTACGTGTTGTTCTGGCCCGAAATATGTCTACAGCCAAGCGGAAAGATTTTGGATTTGTTGATTTCTCTAGCCATGAGTCTGCCGTGGCATGTGTTAATCTTATAAACAATACACCACTGAGTGATGGGCATTTAAAGATAAAAGTGAAAGCAAGACTTTCAAATCCTTTGCCTAAAACTCAGGCTGTGAAGGGTGGAATACGTGGTGGATTTCGAATTGGCCGTGGTGGCAGCGGTGTTTCAAGATTTGGTAGGGATTTTGGTCACAGTGGACACACTTTCAATCGTGCAAATTTCCAACATGACAGACATTTTCATGATGGTGGACGTGGTCAAACTGCGAGGATGGGTTTCAACCAGCATAACTATGATTATCCATATGCTGAGTTTCGTGGACGAGGGGGCAGAAGGGGCTTTTTTAGAGGTGGTCAATTTTCATCTGGTGGAGGTTCTGGAGTTGCTTCCCCATCACCAAGACCTTATGTTGATAGATCTTTGCATGGTGCCCCTGATAGAGGGCGAGGTATGCCTGTTCCTTTTAGGAGGCATCCTTATTCTCCAGAAGGACACTTTGATGGGCCACATATGAGAGGTCACTTTGATGGGCCACACATGAGGGGTCACTTTGATGGGCCACACATGGGGGGTCACTTTGATGGGCCACACATGGGTGGTCACTTTGATGGGCCACACATAGGTGGTCACTTTGATGGGCCACACATAGGTGGTCACTTTGATGAACCTTCTTTTTATGATGAACGTGATAGAACACAAGGCATGAAGCGCCCATTTCATTTGAGAGACTATGATCCTGATTACTTGGAGCCTAGTAGACATCGGCCTCGATTGAATTATAATGATCCAACAGCTTCATTTCGCGGAAATCATTATAGTGATACTTATGGAGCTGGTAGCAGTCTCTACCCTCATGAATATTATGGTCCTGAATCTCATTATGGTCCACATTCATCTTATTATGGGCGCAATCAATCATATGGTGGGGGTCGCTACAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005737 GO:0006417 GO:0006950 GO:0006952 GO:0006955 GO:0007623 GO:0008143 GO:0008150 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0016020 GO:0017148 GO:0019219 GO:0019222 GO:0030425 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031329 GO:0031330 GO:0032268 GO:0032269 GO:0032270 GO:0032991 GO:0034097 GO:0034248 GO:0034249 GO:0034250 GO:0034341 GO:0036477 GO:0042221 GO:0042995 GO:0043005 GO:0043025 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043487 GO:0043488 GO:0043489 GO:0044297 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044463 GO:0044464 GO:0045087 GO:0045727 GO:0045934 GO:0048027 GO:0048255 GO:0048511 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051247 GO:0051248 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0070717 GO:0070887 GO:0070934 GO:0070937 GO:0071013 GO:0071204 GO:0071310 GO:0071345 GO:0071346 GO:0080090 GO:0090365 GO:0090367 GO:0097159 GO:0097447 GO:0097452 GO:0097458 GO:0120025 GO:0120038 GO:1901363 GO:1902369 GO:1902373 GO:1902494 GO:1903311 GO:1903312 GO:1990635 GO:1990904 GO:2000112 GO:2000113
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

1014

Amino Acids

112.05

Weight (kDa)

5.28

Isoelectric Point (pI)

54.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 473 - 541 1.5e-15 RNA recognition motif
RRM_1 PF00076 553 - 617 2.6e-07 RNA recognition motif
RRM_1 PF00076 651 - 715 4.5e-12 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 2129, 2880
AasI GACNNNNNNGTC 1 cut(s) 1928
Acc36I ACCTGC 2 cut(s) 145, 457
AccB1I GGYRCC 1 cut(s) 2528
AccBSI CCGCTC 2 cut(s) 176, 1411
AccI GTMKAC 2 cut(s) 2054, 2857
AccII CGCG 2 cut(s) 634, 2904
AcoI YGGCCR 2 cut(s) 1867, 2245
AcsI RAATTY 2 cut(s) 985, 2317
AcuI CTGAAG 7 cut(s) 603, 681, 759, 912, 1032, 1050, 1829
AdeI CACNNNGTG 3 cut(s) 794, 1640, 2147
AfaI GTAC 2 cut(s) 486, 1185
AfeI AGCGCT 1 cut(s) 197
AfiI CCNNNNNNNGG 6 cut(s) 1756, 2540, 2666, 2693, 2720, 2747
AflIII ACRYGT 1 cut(s) 2029
AjiI CACGTC 2 cut(s) 1459, 2354
AjuI GAANNNNNNNTTGG 2 cut(s) 738, 770
AleI CACNNNNGTG 3 cut(s) 2694, 2721, 2748
AloI GAACNNNNNNTCC 2 cut(s) 389, 421
AluBI AGCT 5 cut(s) 470, 607, 1697, 2894, 2933
AluI AGCT 5 cut(s) 470, 607, 1697, 2894, 2933
Alw26I GTCTC 7 cut(s) 96, 98, 116, 1151, 1340, 2820, 2948
Aor51HI AGCGCT 1 cut(s) 197
ApeKI GCWGC 3 cut(s) 146, 1849, 2256
ApoI RAATTY 2 cut(s) 985, 2317
Asp700I GAANNNNTTC 2 cut(s) 289, 1305
AspLEI GCGC 7 cut(s) 198, 636, 1010, 1395, 1918, 2811, 3009
AsuC2I CCSGG 3 cut(s) 295, 1311, 1757
AsuHPI GGTGA 4 cut(s) 264, 1280, 1829, 2487
AsuII TTCGAA 1 cut(s) 2239
AvaII GGWCC 2 cut(s) 2966, 2984
AxyI CCTNAGG 1 cut(s) 1926
BaeGI GKGCMC 1 cut(s) 2533
BalI TGGCCA 1 cut(s) 1869
BamHI GGATCC 5 cut(s) 550, 571, 649, 727, 1018
BanI GGYRCC 1 cut(s) 2528
BbsI GAAGAC 7 cut(s) 170, 609, 687, 765, 918, 1056, 1461
BbvCI CCTCAGC 1 cut(s) 208
BbvI GCAGC 3 cut(s) 158, 1861, 2268
BceAI ACGGC 4 cut(s) 73, 476, 2093, 2232
BcnI CCSGG 3 cut(s) 295, 1311, 1757
BcoDI GTCTC 7 cut(s) 96, 98, 116, 1151, 1340, 2820, 2948
BfaI CTAG 4 cut(s) 245, 555, 2094, 2853
BfmI CTRYAG 4 cut(s) 594, 750, 963, 2055
BfoI RGCGCY 2 cut(s) 199, 2812
BfuAI ACCTGC 2 cut(s) 145, 457
BglI GCCNNNNNGGC 2 cut(s) 1892, 2253
BglII AGATCT 1 cut(s) 2516
BisI GCNGC 7 cut(s) 56, 147, 632, 710, 1001, 1850, 2257
BlsI GCNGC 7 cut(s) 57, 148, 633, 711, 1002, 1851, 2258
Bme1390I CCNGG 3 cut(s) 295, 1311, 1757
Bme18I GGWCC 2 cut(s) 2966, 2984
BmgBI CACGTC 2 cut(s) 1459, 2354
BmiI GGNNCC 7 cut(s) 552, 573, 651, 729, 1020, 2530, 2850
BmrFI CCNGG 3 cut(s) 295, 1311, 1757
BmrI ACTGGG 2 cut(s) 441, 1632
BmsI GCATC 5 cut(s) 323, 374, 1309, 1810, 2581
BmuI ACTGGG 2 cut(s) 441, 1632
BpiI GAAGAC 7 cut(s) 170, 609, 687, 765, 918, 1056, 1461
BplI GAGNNNNNCTC 2 cut(s) 1145, 1177
BpmI CTGGAG 2 cut(s) 2499, 2568
Bpu10I CCTNAGC 2 cut(s) 208, 234
Bpu14I TTCGAA 1 cut(s) 2239
BpuMI CCSGG 3 cut(s) 295, 1311, 1757
BsaAI YACGTR 3 cut(s) 1683, 2030, 2228
BsaBI GATNNNNATC 1 cut(s) 1221
BsaI GGTCTC 1 cut(s) 1151
BsaJI CCNNGG 6 cut(s) 213, 348, 834, 1783, 2109, 2248
BsaXI ACNNNNNCTCC 4 cut(s) 813, 843, 1476, 1506
Bsc4I CCNNNNNNNGG 6 cut(s) 1756, 2540, 2666, 2693, 2720, 2747
Bse118I RCCGGY 3 cut(s) 17, 58, 310
Bse1I ACTGG 3 cut(s) 436, 552, 1638
Bse21I CCTNAGG 1 cut(s) 1926
Bse3DI GCAATG 2 cut(s) 19, 1093
Bse8I GATNNNNATC 1 cut(s) 1221
BseDI CCNNGG 6 cut(s) 213, 348, 834, 1783, 2109, 2248
BseGI GGATG 5 cut(s) 403, 1363, 1987, 2376, 2572
BseJI GATNNNNATC 1 cut(s) 1221
BseLI CCNNNNNNNGG 6 cut(s) 1756, 2540, 2666, 2693, 2720, 2747
BseMI GCAATG 2 cut(s) 19, 1093
BseMII CTCAG 7 cut(s) 222, 1017, 1335, 1917, 2135, 2219, 2400
BseNI ACTGG 3 cut(s) 436, 552, 1638
BseRI GAGGAG 8 cut(s) 428, 431, 737, 851, 926, 986, 1169, 1463
BseSI GKGCMC 1 cut(s) 2533
BseXI GCAGC 3 cut(s) 158, 1861, 2268
BseYI CCCAGC 1 cut(s) 452
Bsh1236I CGCG 2 cut(s) 634, 2904
BshNI GGYRCC 1 cut(s) 2528
BsiSI CCGG 7 cut(s) 18, 59, 294, 311, 941, 1310, 1757
BslFI GGGAC 3 cut(s) 253, 1642, 1739
BslI CCNNNNNNNGG 6 cut(s) 1756, 2540, 2666, 2693, 2720, 2747
BsmAI GTCTC 7 cut(s) 96, 98, 116, 1151, 1340, 2820, 2948
BsmBI CGTCTC 1 cut(s) 96
BsmFI GGGAC 3 cut(s) 253, 1642, 1739
Bso31I GGTCTC 1 cut(s) 1151
Bsp119I TTCGAA 1 cut(s) 2239
Bsp1286I GDGCHC 1 cut(s) 2533
BspCNI CTCAG 7 cut(s) 221, 1018, 1336, 1918, 2136, 2218, 2401
BspFNI CGCG 2 cut(s) 634, 2904
BspHI TCATGA 4 cut(s) 426, 1330, 2341, 2953
BspLI GGNNCC 7 cut(s) 552, 573, 651, 729, 1020, 2530, 2850
BspMI ACCTGC 2 cut(s) 145, 457
BspT104I TTCGAA 1 cut(s) 2239
BspT107I GGYRCC 1 cut(s) 2528
BspTNI GGTCTC 1 cut(s) 1151
BsrBI CCGCTC 2 cut(s) 176, 1411
BsrDI GCAATG 2 cut(s) 19, 1093
BsrFI RCCGGY 3 cut(s) 17, 58, 310
BsrI ACTGG 3 cut(s) 436, 552, 1638
BssAI RCCGGY 3 cut(s) 17, 58, 310
BssECI CCNNGG 6 cut(s) 213, 348, 834, 1783, 2109, 2248
BssT1I CCWWGG 1 cut(s) 348
Bst4CI ACNGT 3 cut(s) 118, 947, 2294
Bst6I CTCTTC 5 cut(s) 561, 795, 1008, 1029, 1122
BstAPI GCANNNNNTGC 1 cut(s) 344
BstBAI YACGTR 3 cut(s) 1683, 2030, 2228
BstBI TTCGAA 1 cut(s) 2239
BstC8I GCNNGC 7 cut(s) 19, 60, 609, 1173, 1367, 1581, 1830
BstDEI CTNAG 9 cut(s) 208, 234, 1026, 1134, 1344, 1926, 2144, 2205, 2409
BstDSI CCRYGG 2 cut(s) 2109, 2248
BstENI CCTNNNNNAGG 1 cut(s) 2538
BstF5I GGATG 5 cut(s) 403, 1363, 1987, 2376, 2572
BstFNI CGCG 2 cut(s) 634, 2904
BstH2I RGCGCY 2 cut(s) 199, 2812
BstHHI GCGC 7 cut(s) 198, 636, 1010, 1395, 1918, 2811, 3009
BstMAI GTCTC 7 cut(s) 96, 98, 116, 1151, 1340, 2820, 2948
BstNSI RCATGY 2 cut(s) 1574, 2118
BstSCI CCNGG 3 cut(s) 293, 1309, 1755
BstSFI CTRYAG 4 cut(s) 594, 750, 963, 2055
BstSLI GKGCMC 1 cut(s) 2533
BstUI CGCG 2 cut(s) 634, 2904
BstV1I GCAGC 3 cut(s) 158, 1861, 2268
BstV2I GAAGAC 7 cut(s) 170, 609, 687, 765, 918, 1056, 1461
BstX2I RGATCY 7 cut(s) 550, 571, 649, 727, 880, 1018, 2516
BstXI CCANNNNNNTGG 1 cut(s) 1977
BstYI RGATCY 7 cut(s) 550, 571, 649, 727, 880, 1018, 2516
Bsu36I CCTNAGG 1 cut(s) 1926
BtgI CCRYGG 2 cut(s) 2109, 2248
BtgZI GCGATG 2 cut(s) 905, 1366
BtrI CACGTC 2 cut(s) 1459, 2354
BtsCI GGATG 5 cut(s) 403, 1363, 1987, 2376, 2572
BtsIMutI CAGTG 3 cut(s) 1645, 2141, 2299
BveI ACCTGC 2 cut(s) 145, 457
Cac8I GCNNGC 7 cut(s) 19, 60, 609, 1173, 1367, 1581, 1830
CciI TCATGA 4 cut(s) 426, 1330, 2341, 2953
CfoI GCGC 7 cut(s) 198, 636, 1010, 1395, 1918, 2811, 3009
Cfr10I RCCGGY 3 cut(s) 17, 58, 310
Csp6I GTAC 2 cut(s) 485, 1184
CspCI CAANNNNNGTGG 2 cut(s) 1938, 1973
CviQI GTAC 2 cut(s) 485, 1184
DdeI CTNAG 9 cut(s) 208, 234, 1026, 1134, 1344, 1926, 2144, 2205, 2409
DraI TTTAAA 2 cut(s) 2008, 2160
DraIII CACNNNGTG 3 cut(s) 794, 1640, 2147
DrdI GACNNNNNNGTC 1 cut(s) 1928
DseDI GACNNNNNNGTC 1 cut(s) 1928
EaeI YGGCCR 2 cut(s) 1867, 2245
Eam1104I CTCTTC 5 cut(s) 561, 795, 1008, 1029, 1122
EarI CTCTTC 5 cut(s) 561, 795, 1008, 1029, 1122
EciI GGCGGA 1 cut(s) 61
Eco130I CCWWGG 1 cut(s) 348
Eco31I GGTCTC 1 cut(s) 1151
Eco32I GATATC 1 cut(s) 391
Eco47I GGWCC 2 cut(s) 2966, 2984
Eco47III AGCGCT 1 cut(s) 197
Eco57I CTGAAG 7 cut(s) 603, 681, 759, 912, 1032, 1050, 1829
Eco81I CCTNAGG 1 cut(s) 1926
EcoNI CCTNNNNNAGG 1 cut(s) 2538
EcoRI GAATTC 1 cut(s) 985
EcoRV GATATC 1 cut(s) 391
EcoT14I CCWWGG 1 cut(s) 348
EcoT22I ATGCAT 2 cut(s) 367, 1546
ErhI CCWWGG 1 cut(s) 348
Esp3I CGTCTC 1 cut(s) 96
FalI AAGNNNNNCTT 2 cut(s) 2166, 2198
FaqI GGGAC 3 cut(s) 253, 1642, 1739
FauI CCCGC 1 cut(s) 1404
FauNDI CATATG 4 cut(s) 1546, 2404, 2610, 3019
FblI GTMKAC 2 cut(s) 2054, 2857
Fnu4HI GCNGC 7 cut(s) 56, 147, 632, 710, 1001, 1850, 2257
FokI GGATG 5 cut(s) 410, 1370, 1994, 2383, 2559
Fsp4HI GCNGC 7 cut(s) 56, 147, 632, 710, 1001, 1850, 2257
FspBI CTAG 4 cut(s) 245, 555, 2094, 2853
GlaI GCGC 7 cut(s) 197, 635, 1009, 1394, 1917, 2810, 3008
GluI GCNGC 7 cut(s) 56, 147, 632, 710, 1001, 1850, 2257
GsaI CCCAGC 1 cut(s) 456
GsuI CTGGAG 2 cut(s) 2499, 2568
HaeII RGCGCY 2 cut(s) 199, 2812
HapII CCGG 7 cut(s) 18, 59, 294, 311, 941, 1310, 1757
HhaI GCGC 7 cut(s) 198, 636, 1010, 1395, 1918, 2811, 3009
Hin6I GCGC 7 cut(s) 196, 634, 1008, 1393, 1916, 2809, 3007
HinP1I GCGC 7 cut(s) 196, 634, 1008, 1393, 1916, 2809, 3007
HincII GTYRAC 1 cut(s) 1374
HindII GTYRAC 1 cut(s) 1374
HpaII CCGG 7 cut(s) 18, 59, 294, 311, 941, 1310, 1757
HphI GGTGA 4 cut(s) 264, 1280, 1829, 2487
Hpy188I TCNGA 7 cut(s) 539, 622, 700, 778, 991, 1069, 1591
Hpy99I CGWCG 1 cut(s) 122
HpyCH4III ACNGT 3 cut(s) 118, 947, 2294
HpyCH4IV ACGT 7 cut(s) 1458, 1655, 1682, 2029, 2227, 2353, 2785
HpyF3I CTNAG 9 cut(s) 208, 234, 1026, 1134, 1344, 1926, 2144, 2205, 2409
HpySE526I ACGT 7 cut(s) 1458, 1655, 1682, 2029, 2227, 2353, 2785
HspAI GCGC 7 cut(s) 196, 634, 1008, 1393, 1916, 2809, 3007
KroI GCCGGC 2 cut(s) 17, 58
KroNI GCCGGC 2 cut(s) 19, 60
LmnI GCTCC 6 cut(s) 181, 604, 1390, 1567, 2848, 2930
Lsp1109I GCAGC 3 cut(s) 158, 1861, 2268
LweI GCATC 5 cut(s) 323, 374, 1309, 1810, 2581
MaeI CTAG 4 cut(s) 245, 555, 2094, 2853
MaeII ACGT 7 cut(s) 1458, 1655, 1682, 2029, 2227, 2353, 2785
MbiI CCGCTC 2 cut(s) 176, 1411
MflI RGATCY 7 cut(s) 550, 571, 649, 727, 880, 1018, 2516
MhlI GDGCHC 1 cut(s) 2533
MlsI TGGCCA 1 cut(s) 1869
MluCI AATT 9 cut(s) 985, 1044, 1275, 2003, 2241, 2317, 2456, 2875, 3037
MluNI TGGCCA 1 cut(s) 1869
MlyI GAGTC 6 cut(s) 100, 212, 814, 1046, 1139, 2111
MmeI TCCRAC 4 cut(s) 438, 484, 2347, 2912
Mox20I TGGCCA 1 cut(s) 1869
Mph1103I ATGCAT 2 cut(s) 367, 1546
MreI CGCCGGCG 1 cut(s) 58
MroNI GCCGGC 2 cut(s) 17, 58
MroXI GAANNNNTTC 2 cut(s) 289, 1305
MscI TGGCCA 1 cut(s) 1869
MseI TTAA 5 cut(s) 600, 1701, 2007, 2121, 2159
Msp20I TGGCCA 1 cut(s) 1869
MspA1I CMGCKG 4 cut(s) 224, 470, 712, 2259
MspI CCGG 7 cut(s) 18, 59, 294, 311, 941, 1310, 1757
MspR9I CCNGG 3 cut(s) 295, 1311, 1757
MvnI CGCG 2 cut(s) 634, 2904
NaeI GCCGGC 2 cut(s) 19, 60
NciI CCSGG 3 cut(s) 295, 1311, 1757
NdeI CATATG 4 cut(s) 1546, 2404, 2610, 3019
NgoMIV GCCGGC 2 cut(s) 17, 58
NlaIV GGNNCC 7 cut(s) 552, 573, 651, 729, 1020, 2530, 2850
NmeAIII GCCGAG 2 cut(s) 238, 1808
NmuCI GTSAC 9 cut(s) 794, 872, 2288, 2618, 2645, 2672, 2699, 2726, 2753
NsiI ATGCAT 2 cut(s) 367, 1546
NspI RCATGY 2 cut(s) 1574, 2118
NspV TTCGAA 1 cut(s) 2239
OliI CACNNNNGTG 3 cut(s) 2694, 2721, 2748
PagI TCATGA 4 cut(s) 426, 1330, 2341, 2953
PcsI WCGNNNNNNNCGW 3 cut(s) 59, 1618, 2245
PdiI GCCGGC 2 cut(s) 19, 60
PdmI GAANNNNTTC 2 cut(s) 289, 1305
PfeI GAWTC 7 cut(s) 590, 668, 746, 824, 899, 1513, 2972
PflFI GACNNNGTC 1 cut(s) 2355
PfoI TCCNGGA 3 cut(s) 293, 1309, 1755
PkrI GCNGC 7 cut(s) 57, 148, 633, 711, 1002, 1851, 2258
PleI GAGTC 6 cut(s) 100, 212, 813, 1045, 1138, 2110
PpsI GAGTC 6 cut(s) 100, 212, 813, 1045, 1138, 2110
Ppu21I YACGTR 3 cut(s) 1683, 2030, 2228
PsiI TTATAA 2 cut(s) 2129, 2880
PspFI CCCAGC 1 cut(s) 452
PspN4I GGNNCC 7 cut(s) 552, 573, 651, 729, 1020, 2530, 2850
PsuI RGATCY 7 cut(s) 550, 571, 649, 727, 880, 1018, 2516
PsyI GACNNNGTC 1 cut(s) 2355
PvuII CAGCTG 1 cut(s) 470
RsaI GTAC 2 cut(s) 486, 1185
RsaNI GTAC 2 cut(s) 485, 1184
SaqAI TTAA 5 cut(s) 600, 1701, 2007, 2121, 2159
SatI GCNGC 7 cut(s) 56, 147, 632, 710, 1001, 1850, 2257
SchI GAGTC 6 cut(s) 100, 212, 814, 1046, 1139, 2111
ScrFI CCNGG 3 cut(s) 295, 1311, 1757
SduI GDGCHC 1 cut(s) 2533
SfaNI GCATC 5 cut(s) 323, 374, 1309, 1810, 2581
SfcI CTRYAG 4 cut(s) 594, 750, 963, 2055
SfuI TTCGAA 1 cut(s) 2239
SgrAI CRCCGGYG 1 cut(s) 58
SinI GGWCC 2 cut(s) 2966, 2984
SmiI ATTTAAAT 1 cut(s) 2008
Sse9I AATT 9 cut(s) 985, 1044, 1275, 2003, 2241, 2317, 2456, 2875, 3037
SspI AATATT 3 cut(s) 1953, 2025, 2960
SspMI CTAG 4 cut(s) 245, 555, 2094, 2853
StyD4I CCNGG 3 cut(s) 293, 1309, 1755
StyI CCWWGG 1 cut(s) 348
SwaI ATTTAAAT 1 cut(s) 2008
TaaI ACNGT 3 cut(s) 118, 947, 2294
TaiI ACGT 7 cut(s) 1461, 1658, 1685, 2032, 2230, 2356, 2788
TaqI TCGA 6 cut(s) 120, 368, 657, 1612, 2239, 2869
TasI AATT 9 cut(s) 985, 1044, 1275, 2003, 2241, 2317, 2456, 2875, 3037
TauI GCSGC 4 cut(s) 58, 634, 712, 1003
TfiI GAWTC 7 cut(s) 590, 668, 746, 824, 899, 1513, 2972
Tru1I TTAA 5 cut(s) 600, 1701, 2007, 2121, 2159
Tru9I TTAA 5 cut(s) 600, 1701, 2007, 2121, 2159
TscAI CASTG 3 cut(s) 1645, 2148, 2299
TseFI GTSAC 9 cut(s) 794, 872, 2288, 2618, 2645, 2672, 2699, 2726, 2753
TseI GCWGC 3 cut(s) 146, 1849, 2256
Tsp45I GTSAC 9 cut(s) 794, 872, 2288, 2618, 2645, 2672, 2699, 2726, 2753
TspGWI ACGGA 1 cut(s) 84
TspRI CASTG 3 cut(s) 1645, 2148, 2299
Tth111I GACNNNGTC 1 cut(s) 2355
VpaK11BI GGWCC 2 cut(s) 2966, 2984
XagI CCTNNNNNAGG 1 cut(s) 2538
XapI RAATTY 2 cut(s) 985, 2317
XceI RCATGY 2 cut(s) 1574, 2118
XmiI GTMKAC 2 cut(s) 2054, 2857
XmnI GAANNNNTTC 2 cut(s) 289, 1305
XspI CTAG 4 cut(s) 245, 555, 2094, 2853
Zsp2I ATGCAT 2 cut(s) 367, 1546
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.