RchiOBHm_Chr2g0099651

negative regulation of mRNA metabolic process

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0011510
Physical Location & Seq
Forward (+)
11799671 .. 11806466
6796 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ47437

Sequence Viewer

Length: 2937 bp
ATGAAAACTCGCAATGCCGGCGTTCCTAAACCGTCGACGACCGCAAAGAAAACGCCGCCGGCGAGAAAATCCGCTTCCAAAGCACAGCCGTCTCCGTCAGTAGAGACTCCTAAAACCGTCGAGACAAAGCGGACTTCTGCCAGAGCAGCCATGCAGGTCAAGAAGACTGAAACCGCTCCCGTTACTGCTTCAAAGCGCCGTCAATCCTCAGCCGAGGACTCGGCTGGTGGTGCTAAGGGGACACTAGGCACTAAAGTTGGTGTGGGAACTTCACCAATAGGGAGAAGGACTTCCGGGAGAGCAAAGGCACCGGCATCGGTGTATGTTTCAGCACAGGCACAGTCTGCTAAGGCAAAAGGAAATGCATCGAATAAGAAGAAAAAGGTAGATATCAAGGATGTGGAGTTCACAGAGGAGGAGGTCATGGCTGAGTTTGATGGAAAACCTGCAGGGTTGGAAGAAACAGCTGTGGGGGAAGAAGTACCAGCCGTTGAGAATGTTGGAGTTTCTGCAACAGATGAAAAAGGTGCTGTCAGAGTAGAACTGGATCCTAGTGAAGATGAAGAGGATCCTATTGAGATGGAAGAATCTGTAGTTAAGGAGGTTGCAAAGTCTTCAGAGAATGTGCCGCGCTGTGATGAAGGGGATCCTGTTGAAGTAGAAGAATCTGTGATTGAGGAGGTTGCAAAGTCTTCAGAGTGTGTGCCGCTGTGTGATGAGGAGGATCCTGTTGAGAAAGAAGAATCTGTAGTTGGGGAGGCTGCAAGGTCTTCAGAGAATGAACCACCCTGTGACAAAGAAAATCCTGTTGCGATAGAAGAATCTGTAATAGAGGAGATTGCAAGGTCTTCAGGAAATCAGCCGGCCTGTGATATAAGACAATCTGTAGTTGAGGAGGTCGCAAGGAATTCAGAGAATGAGCCGCCCTGCGCTGAAGAGGATCCTACTGAGATAGAAGAGTCTGCAATTGAGGTTGTTACAAAGTCTTCAGAAAATAGATTACCCTGCGATGTAAGAGAAAGAGTGGAAGTGAAAGCAGAACAGAAGGCAGAGTCTAAGGATAATGATAGTAATGAGGAGACCTCTTTTGAGCCTGCTAACAAGTTACAAAATGACAAAGCAAGGTTACAAGGAGAAGATACTGATCTTCCAAAAGAGATGTATGCTGTTGATGAGGAAATGGAATATGGTGAGAAAATTGATCTGGGAGAACATGGAGAGGAAGAACTTCCGGCAGATGATGCAGAGGATCATGAAGAAGAAACTGAGACATTGGAGGATGAACGCCAGCAGTTGACAGCCATCGCAAAGGAGCGCAAGATAAAGAAAGAGCGGGAGGTATTTCTTGATGGTCTTGATCCGGATGTTGAGGAGGAAGACGTGAGAAGGGTCTTTGAGAGGATTGGAGGGATAGTTGAGGTTAGGTTACAGAAGAATCCTTCAACTAATAAGAATAAGGGTTATGCATATGTGGAGTTCAAAGATAAGGAGCATGTGAGGCGTGCTTTGTCTGAAATGAAAAACCCTGCTATTCGAGGGAAACGATGTGGGACAGCACCCAGTGAGGACAATACCACGTTGTTCATAGGTAACATCTGCAATACGTGGACAAAGGAAGCTATTAAACAAAAACTAAAGGATTATGAGGTTGAAGGCATTGAGAACATAAACCTTGTCCCGGATATTCGACGTGAAGGGTTGAGCCGAGGTTTTGCATTTGTTGAGTTCTCTTGTCATGGTGATGCTATGCTTGCATACAAGAGGCTTCAGCAGTCTGATGTTATATTTGGCCACCCTGAAAGGACTGCGAAAGTGGCCTTTGCTGAACCTATATGTGAGCCTGACCCTGAGGTCATGGCCCAAGTGAAGTCAATATTTGTGGATGGGCTTCCACCTCATTGGGATGAGAAACAGGTTAGAGAGCAATTTAAATGCTATGGAGAAATATTACGTGTTGTTCTGGCCCGAAATATGTCTACAGCCAAGCGGAAAGATTTTGGATTTGTTGATTTCTCTAGCCACGAGTCTGCTGTGGCATGTGTTAATGTTGTAAACAATACACCACTGAGTGATGGGCATTTAAAGATAAAAGTGAAAGCAAGACTTTCAAATCCTTTGCCTAAAACTCAGGCTGTGAAGGGTGGAATACGTGGTGGATTTCGAATTGGCCATGGTGGCAGCGGTGTTTCAAGATTTGGTAGGGATTTTGGTCGCAGTGGACACACTTCCAATCGTGCAAATTTCCAACATGACAGACATGTTTATGACGGTGGACGTGGTCAAACTGCGAGGATGGGTTTCAATCAGCATAACTATGATTATCCATATGCTGAGTTTCGTGGACGAGGGGGCAGAAGGGGCTTTTTTAGAGGTGGTCAATTTTCATCTGGTGGAGGTTCTGGAGTTGCTTCCCCATCACCAAGACCTTATGTTGATAGATCTTCGCATGGTGCCCCTGATAGAGGGCGAGGTATGCCTGCTCCTTTTAGGAGGCATCCTTATTCTCCAGAAGGACACTTTGATGGGCCACATATGAGGGGTCACTTTGATGGGCCACACATGGGGGGTCACTTTGATGGGCCACACATGGGTGGTCACTTTGGTGGGCCACACATTGGTGGTCACTTTGGTGGGCCACACATAGGTGGTCACTTTGATGAACCTTCTTTTTATGATGAACGTGATAGAACACAAGGCATCAAGCGCCCATTTCATATGAGAGACTATGATCCTGATTACTTGGAGCCTAGTAGACATCGGCCACGATTGAATTATAATGATCCAACAGCTTCATTTCGCGGAAACCATTATAGTGATACTTATGGAGCTGGTAGCAGTCTCTACCCTCATGAATATTATGGTCCTGAATCGCATTATGGTCCACATTCATCTTATTATGGGCGCAATCAATCATATGGTGGGGGTCGCTACTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005737 GO:0006417 GO:0006950 GO:0006952 GO:0006955 GO:0007623 GO:0008143 GO:0008150 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0016020 GO:0017148 GO:0019219 GO:0019222 GO:0030425 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031329 GO:0031330 GO:0032268 GO:0032269 GO:0032270 GO:0032991 GO:0034097 GO:0034248 GO:0034249 GO:0034250 GO:0034341 GO:0036477 GO:0042221 GO:0042995 GO:0043005 GO:0043025 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043487 GO:0043488 GO:0043489 GO:0044297 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044463 GO:0044464 GO:0045087 GO:0045727 GO:0045934 GO:0048027 GO:0048255 GO:0048511 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051247 GO:0051248 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0070717 GO:0070887 GO:0070934 GO:0070937 GO:0071013 GO:0071204 GO:0071310 GO:0071345 GO:0071346 GO:0080090 GO:0090365 GO:0090367 GO:0097159 GO:0097447 GO:0097452 GO:0097458 GO:0120025 GO:0120038 GO:1901363 GO:1902369 GO:1902373 GO:1902494 GO:1903311 GO:1903312 GO:1990635 GO:1990904 GO:2000112 GO:2000113
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

978

Amino Acids

108.07

Weight (kDa)

5.45

Isoelectric Point (pI)

59.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 447 - 515 1.4e-15 RNA recognition motif
RRM_1 PF00076 527 - 591 1e-07 RNA recognition motif
RRM_1 PF00076 625 - 689 1.6e-12 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2775
AasI GACNNNNNNGTC 1 cut(s) 1850
Acc36I ACCTGC 2 cut(s) 145, 454
AccB1I GGYRCC 2 cut(s) 307, 2450
AccB7I CCANNNNNTGG 1 cut(s) 2615
AccBSI CCGCTC 2 cut(s) 176, 1333
AccI GTMKAC 3 cut(s) 35, 1976, 2752
AccII CGCG 2 cut(s) 631, 2799
AccIII TCCGGA 1 cut(s) 1360
AcoI YGGCCR 3 cut(s) 1789, 2167, 2759
AcsI RAATTY 2 cut(s) 907, 2239
AcuI CTGAAG 7 cut(s) 600, 678, 756, 834, 954, 972, 1751
AdeI CACNNNGTG 3 cut(s) 791, 1562, 2069
AfaI GTAC 1 cut(s) 483
AfiI CCNNNNNNNGG 6 cut(s) 1678, 2462, 2561, 2588, 2615, 2642
AflIII ACRYGT 2 cut(s) 1951, 2257
AgsI TTSAA 9 cut(s) 192, 656, 1443, 1480, 1652, 2109, 2190, 2302, 2770
AjiI CACGTC 3 cut(s) 1381, 1691, 2276
AjuI GAANNNNNNNTTGG 2 cut(s) 735, 767
AleI CACNNNNGTG 5 cut(s) 2589, 2601, 2616, 2628, 2643
AloI GAACNNNNNNTCC 2 cut(s) 389, 421
AluBI AGCT 4 cut(s) 467, 1619, 2789, 2828
AluI AGCT 4 cut(s) 467, 1619, 2789, 2828
Alw26I GTCTC 7 cut(s) 96, 98, 116, 1073, 1262, 2715, 2843
Aor13HI TCCGGA 1 cut(s) 1360
ApeKI GCWGC 3 cut(s) 146, 761, 2178
ApoI RAATTY 2 cut(s) 907, 2239
Asp700I GAANNNNTTC 2 cut(s) 289, 1227
AspLEI GCGC 6 cut(s) 198, 633, 932, 1317, 2706, 2904
AspS9I GGNCC 9 cut(s) 1858, 1963, 2525, 2552, 2579, 2606, 2633, 2861, 2879
AsuC2I CCSGG 2 cut(s) 295, 1679
AsuHPI GGTGA 4 cut(s) 264, 1202, 1751, 2409
AsuII TTCGAA 1 cut(s) 2161
AvaII GGWCC 2 cut(s) 2861, 2879
AxyI CCTNAGG 1 cut(s) 1848
BaeGI GKGCMC 1 cut(s) 2455
BalI TGGCCA 2 cut(s) 1791, 2169
BamHI GGATCC 5 cut(s) 547, 568, 646, 724, 940
BanI GGYRCC 2 cut(s) 307, 2450
BauI CACGAG 1 cut(s) 2021
BbsI GAAGAC 7 cut(s) 170, 606, 684, 762, 840, 978, 1383
BbvCI CCTCAGC 1 cut(s) 208
BbvI GCAGC 3 cut(s) 158, 748, 2190
BceAI ACGGC 3 cut(s) 73, 183, 473
BcgI CGANNNNNNTGC 2 cut(s) 297, 331
BcnI CCSGG 2 cut(s) 295, 1679
BcoDI GTCTC 7 cut(s) 96, 98, 116, 1073, 1262, 2715, 2843
BfaI CTAG 4 cut(s) 245, 552, 2016, 2748
BfmI CTRYAG 5 cut(s) 447, 591, 747, 885, 1977
BfoI RGCGCY 2 cut(s) 199, 2707
BfuAI ACCTGC 2 cut(s) 145, 454
BglI GCCNNNNNGGC 1 cut(s) 2175
BglII AGATCT 1 cut(s) 2438
BisI GCNGC 7 cut(s) 56, 147, 629, 707, 762, 923, 2179
BlsI GCNGC 7 cut(s) 57, 148, 630, 708, 763, 924, 2180
Bme1390I CCNGG 2 cut(s) 295, 1679
Bme18I GGWCC 2 cut(s) 2861, 2879
BmgBI CACGTC 3 cut(s) 1381, 1691, 2276
BmgT120I GGNCC 9 cut(s) 1858, 1963, 2525, 2552, 2579, 2606, 2633, 2861, 2879
BmiI GGNNCC 8 cut(s) 309, 549, 570, 648, 726, 942, 2452, 2745
BmrFI CCNGG 2 cut(s) 295, 1679
BmrI ACTGGG 1 cut(s) 1554
BmsI GCATC 6 cut(s) 323, 374, 1231, 1732, 2503, 2706
BmuI ACTGGG 1 cut(s) 1554
BpiI GAAGAC 7 cut(s) 170, 606, 684, 762, 840, 978, 1383
BplI GAGNNNNNCTC 2 cut(s) 1067, 1099
BpmI CTGGAG 2 cut(s) 2421, 2490
Bpu10I CCTNAGC 3 cut(s) 208, 234, 348
Bpu14I TTCGAA 1 cut(s) 2161
BpuMI CCSGG 2 cut(s) 295, 1679
BsaAI YACGTR 3 cut(s) 1605, 1952, 2150
BsaBI GATNNNNATC 1 cut(s) 1143
BsaI GGTCTC 1 cut(s) 1073
BsaJI CCNNGG 3 cut(s) 213, 1705, 2170
BsaWI WCCGGW 1 cut(s) 1360
BsaXI ACNNNNNCTCC 2 cut(s) 1398, 1428
Bsc4I CCNNNNNNNGG 6 cut(s) 1678, 2462, 2561, 2588, 2615, 2642
Bse118I RCCGGY 4 cut(s) 17, 58, 310, 862
Bse1I ACTGG 2 cut(s) 549, 1560
Bse21I CCTNAGG 1 cut(s) 1848
Bse3DI GCAATG 1 cut(s) 19
Bse8I GATNNNNATC 1 cut(s) 1143
BseAI TCCGGA 1 cut(s) 1360
BseDI CCNNGG 3 cut(s) 213, 1705, 2170
BseGI GGATG 7 cut(s) 403, 1285, 1369, 1888, 1909, 2298, 2494
BseJI GATNNNNATC 1 cut(s) 1143
BseLI CCNNNNNNNGG 6 cut(s) 1678, 2462, 2561, 2588, 2615, 2642
BseMI GCAATG 1 cut(s) 19
BseMII CTCAG 8 cut(s) 222, 420, 939, 1257, 1839, 2057, 2141, 2322
BseNI ACTGG 2 cut(s) 549, 1560
BseRI GAGGAG 8 cut(s) 428, 431, 692, 734, 848, 908, 1091, 1385
BseSI GKGCMC 1 cut(s) 2455
BseXI GCAGC 3 cut(s) 158, 748, 2190
Bsh1236I CGCG 2 cut(s) 631, 2799
Bsh1285I CGRYCG 1 cut(s) 42
BshNI GGYRCC 2 cut(s) 307, 2450
BsiEI CGRYCG 1 cut(s) 42
BsiSI CCGG 8 cut(s) 18, 59, 294, 311, 863, 1232, 1361, 1679
BslFI GGGAC 3 cut(s) 253, 1564, 1661
BslI CCNNNNNNNGG 6 cut(s) 1678, 2462, 2561, 2588, 2615, 2642
BsmAI GTCTC 7 cut(s) 96, 98, 116, 1073, 1262, 2715, 2843
BsmBI CGTCTC 1 cut(s) 96
BsmFI GGGAC 3 cut(s) 253, 1564, 1661
Bso31I GGTCTC 1 cut(s) 1073
Bsp119I TTCGAA 1 cut(s) 2161
Bsp1286I GDGCHC 1 cut(s) 2455
Bsp13I TCCGGA 1 cut(s) 1360
Bsp19I CCATGG 1 cut(s) 2170
BspCNI CTCAG 8 cut(s) 221, 421, 940, 1258, 1840, 2058, 2140, 2323
BspEI TCCGGA 1 cut(s) 1360
BspFNI CGCG 2 cut(s) 631, 2799
BspHI TCATGA 2 cut(s) 1252, 2848
BspLI GGNNCC 8 cut(s) 309, 549, 570, 648, 726, 942, 2452, 2745
BspMAI CTGCAG 1 cut(s) 451
BspMI ACCTGC 2 cut(s) 145, 454
BspT104I TTCGAA 1 cut(s) 2161
BspT107I GGYRCC 2 cut(s) 307, 2450
BspTNI GGTCTC 1 cut(s) 1073
BsrBI CCGCTC 2 cut(s) 176, 1333
BsrDI GCAATG 1 cut(s) 19
BsrFI RCCGGY 4 cut(s) 17, 58, 310, 862
BsrI ACTGG 2 cut(s) 549, 1560
BssAI RCCGGY 4 cut(s) 17, 58, 310, 862
BssECI CCNNGG 3 cut(s) 213, 1705, 2170
BssSI CACGAG 1 cut(s) 2021
BssT1I CCWWGG 1 cut(s) 2170
Bst2BI CACGAG 1 cut(s) 2021
Bst4CI ACNGT 4 cut(s) 33, 118, 342, 2270
Bst6I CTCTTC 3 cut(s) 558, 930, 951
BstAPI GCANNNNNTGC 2 cut(s) 344, 1241
BstBAI YACGTR 3 cut(s) 1605, 1952, 2150
BstBI TTCGAA 1 cut(s) 2161
BstC8I GCNNGC 8 cut(s) 19, 60, 864, 1095, 1289, 1503, 1752, 2478
BstDSI CCRYGG 1 cut(s) 2170
BstENI CCTNNNNNAGG 1 cut(s) 2460
BstF5I GGATG 7 cut(s) 403, 1285, 1369, 1888, 1909, 2298, 2494
BstFNI CGCG 2 cut(s) 631, 2799
BstH2I RGCGCY 2 cut(s) 199, 2707
BstHHI GCGC 6 cut(s) 198, 633, 932, 1317, 2706, 2904
BstMAI GTCTC 7 cut(s) 96, 98, 116, 1073, 1262, 2715, 2843
BstMCI CGRYCG 1 cut(s) 42
BstNSI RCATGY 3 cut(s) 1496, 2040, 2261
BstSCI CCNGG 2 cut(s) 293, 1677
BstSFI CTRYAG 5 cut(s) 447, 591, 747, 885, 1977
BstSLI GKGCMC 1 cut(s) 2455
BstUI CGCG 2 cut(s) 631, 2799
BstV1I GCAGC 3 cut(s) 158, 748, 2190
BstV2I GAAGAC 7 cut(s) 170, 606, 684, 762, 840, 978, 1383
BstX2I RGATCY 6 cut(s) 547, 568, 646, 724, 940, 2438
BstXI CCANNNNNNTGG 1 cut(s) 1899
BstYI RGATCY 6 cut(s) 547, 568, 646, 724, 940, 2438
Bsu36I CCTNAGG 1 cut(s) 1848
BtgI CCRYGG 1 cut(s) 2170
BtgZI GCGATG 2 cut(s) 1023, 1288
BtrI CACGTC 3 cut(s) 1381, 1691, 2276
BtsCI GGATG 7 cut(s) 403, 1285, 1369, 1888, 1909, 2298, 2494
BtsI GCAGTG 1 cut(s) 2221
BtsIMutI CAGTG 3 cut(s) 1567, 2063, 2221
BveI ACCTGC 2 cut(s) 145, 454
Cac8I GCNNGC 8 cut(s) 19, 60, 864, 1095, 1289, 1503, 1752, 2478
CciI TCATGA 2 cut(s) 1252, 2848
CfoI GCGC 6 cut(s) 198, 633, 932, 1317, 2706, 2904
Cfr10I RCCGGY 4 cut(s) 17, 58, 310, 862
Cfr13I GGNCC 9 cut(s) 1858, 1963, 2525, 2552, 2579, 2606, 2633, 2861, 2879
Csp6I GTAC 1 cut(s) 482
CspCI CAANNNNNGTGG 2 cut(s) 1860, 1895
CviQI GTAC 1 cut(s) 482
DraI TTTAAA 2 cut(s) 1930, 2082
DraIII CACNNNGTG 3 cut(s) 791, 1562, 2069
DrdI GACNNNNNNGTC 1 cut(s) 1850
DseDI GACNNNNNNGTC 1 cut(s) 1850
EaeI YGGCCR 3 cut(s) 1789, 2167, 2759
Eam1104I CTCTTC 3 cut(s) 558, 930, 951
EarI CTCTTC 3 cut(s) 558, 930, 951
Eco130I CCWWGG 1 cut(s) 2170
Eco31I GGTCTC 1 cut(s) 1073
Eco32I GATATC 1 cut(s) 391
Eco47I GGWCC 2 cut(s) 2861, 2879
Eco57I CTGAAG 7 cut(s) 600, 678, 756, 834, 954, 972, 1751
Eco81I CCTNAGG 1 cut(s) 1848
EcoNI CCTNNNNNAGG 1 cut(s) 2460
EcoRI GAATTC 1 cut(s) 907
EcoRV GATATC 1 cut(s) 391
EcoT14I CCWWGG 1 cut(s) 2170
EcoT22I ATGCAT 2 cut(s) 367, 1468
ErhI CCWWGG 1 cut(s) 2170
Esp3I CGTCTC 1 cut(s) 96
FalI AAGNNNNNCTT 2 cut(s) 2088, 2120
FaqI GGGAC 3 cut(s) 253, 1564, 1661
FauI CCCGC 1 cut(s) 1326
FauNDI CATATG 5 cut(s) 1468, 2326, 2532, 2715, 2914
FblI GTMKAC 3 cut(s) 35, 1976, 2752
Fnu4HI GCNGC 7 cut(s) 56, 147, 629, 707, 762, 923, 2179
FokI GGATG 7 cut(s) 410, 1292, 1376, 1895, 1916, 2305, 2481
Fsp4HI GCNGC 7 cut(s) 56, 147, 629, 707, 762, 923, 2179
FspBI CTAG 4 cut(s) 245, 552, 2016, 2748
GlaI GCGC 6 cut(s) 197, 632, 931, 1316, 2705, 2903
GluI GCNGC 7 cut(s) 56, 147, 629, 707, 762, 923, 2179
GsuI CTGGAG 2 cut(s) 2421, 2490
HaeII RGCGCY 2 cut(s) 199, 2707
HapII CCGG 8 cut(s) 18, 59, 294, 311, 863, 1232, 1361, 1679
HhaI GCGC 6 cut(s) 198, 633, 932, 1317, 2706, 2904
Hin6I GCGC 6 cut(s) 196, 631, 930, 1315, 2704, 2902
HinP1I GCGC 6 cut(s) 196, 631, 930, 1315, 2704, 2902
HincII GTYRAC 2 cut(s) 36, 1296
HindII GTYRAC 2 cut(s) 36, 1296
HpaII CCGG 8 cut(s) 18, 59, 294, 311, 863, 1232, 1361, 1679
HphI GGTGA 4 cut(s) 264, 1202, 1751, 2409
Hpy188I TCNGA 8 cut(s) 536, 619, 697, 775, 913, 991, 1513, 1777
Hpy99I CGWCG 4 cut(s) 37, 40, 122, 1692
HpyCH4III ACNGT 4 cut(s) 33, 118, 342, 2270
HpyCH4IV ACGT 8 cut(s) 1380, 1577, 1604, 1690, 1951, 2149, 2275, 2680
HpySE526I ACGT 8 cut(s) 1380, 1577, 1604, 1690, 1951, 2149, 2275, 2680
HspAI GCGC 6 cut(s) 196, 631, 930, 1315, 2704, 2902
Kpn2I TCCGGA 1 cut(s) 1360
KroI GCCGGC 3 cut(s) 17, 58, 862
KroNI GCCGGC 3 cut(s) 19, 60, 864
LmnI GCTCC 6 cut(s) 181, 1312, 1489, 2485, 2743, 2825
Lsp1109I GCAGC 3 cut(s) 158, 748, 2190
LweI GCATC 6 cut(s) 323, 374, 1231, 1732, 2503, 2706
MaeI CTAG 4 cut(s) 245, 552, 2016, 2748
MaeII ACGT 8 cut(s) 1380, 1577, 1604, 1690, 1951, 2149, 2275, 2680
MbiI CCGCTC 2 cut(s) 176, 1333
MfeI CAATTG 1 cut(s) 966
MflI RGATCY 6 cut(s) 547, 568, 646, 724, 940, 2438
MhlI GDGCHC 1 cut(s) 2455
MlsI TGGCCA 2 cut(s) 1791, 2169
MluCI AATT 8 cut(s) 907, 966, 1197, 1925, 2163, 2239, 2378, 2770
MluNI TGGCCA 2 cut(s) 1791, 2169
MlyI GAGTC 5 cut(s) 100, 212, 968, 1061, 2033
MmeI TCCRAC 4 cut(s) 435, 481, 2269, 2807
Mox20I TGGCCA 2 cut(s) 1791, 2169
Mph1103I ATGCAT 2 cut(s) 367, 1468
MreI CGCCGGCG 1 cut(s) 58
MroI TCCGGA 1 cut(s) 1360
MroNI GCCGGC 3 cut(s) 17, 58, 862
MroXI GAANNNNTTC 2 cut(s) 289, 1227
MscI TGGCCA 2 cut(s) 1791, 2169
MseI TTAA 5 cut(s) 597, 1623, 1929, 2043, 2081
Msp20I TGGCCA 2 cut(s) 1791, 2169
MspA1I CMGCKG 3 cut(s) 467, 709, 2181
MspI CCGG 8 cut(s) 18, 59, 294, 311, 863, 1232, 1361, 1679
MspR9I CCNGG 2 cut(s) 295, 1679
MunI CAATTG 1 cut(s) 966
MvnI CGCG 2 cut(s) 631, 2799
NaeI GCCGGC 3 cut(s) 19, 60, 864
NciI CCSGG 2 cut(s) 295, 1679
NcoI CCATGG 1 cut(s) 2170
NdeI CATATG 5 cut(s) 1468, 2326, 2532, 2715, 2914
NgoMIV GCCGGC 3 cut(s) 17, 58, 862
NlaIV GGNNCC 8 cut(s) 309, 549, 570, 648, 726, 942, 2452, 2745
NmeAIII GCCGAG 3 cut(s) 200, 238, 1730
NmuCI GTSAC 6 cut(s) 791, 2540, 2567, 2594, 2621, 2648
NsiI ATGCAT 2 cut(s) 367, 1468
NspI RCATGY 3 cut(s) 1496, 2040, 2261
NspV TTCGAA 1 cut(s) 2161
OliI CACNNNNGTG 5 cut(s) 2589, 2601, 2616, 2628, 2643
PagI TCATGA 2 cut(s) 1252, 2848
PciI ACATGT 1 cut(s) 2257
PcsI WCGNNNNNNNCGW 2 cut(s) 59, 1540
PdiI GCCGGC 3 cut(s) 19, 60, 864
PdmI GAANNNNTTC 2 cut(s) 289, 1227
PfeI GAWTC 6 cut(s) 587, 665, 743, 821, 1435, 2867
PflFI GACNNNGTC 1 cut(s) 2277
PflMI CCANNNNNTGG 1 cut(s) 2615
PfoI TCCNGGA 2 cut(s) 293, 1677
PkrI GCNGC 7 cut(s) 57, 148, 630, 708, 763, 924, 2180
PleI GAGTC 5 cut(s) 100, 212, 967, 1060, 2032
PpsI GAGTC 5 cut(s) 100, 212, 967, 1060, 2032
Ppu21I YACGTR 3 cut(s) 1605, 1952, 2150
PscI ACATGT 1 cut(s) 2257
PsiI TTATAA 1 cut(s) 2775
PspN4I GGNNCC 8 cut(s) 309, 549, 570, 648, 726, 942, 2452, 2745
PspPI GGNCC 9 cut(s) 1858, 1963, 2525, 2552, 2579, 2606, 2633, 2861, 2879
PstI CTGCAG 1 cut(s) 451
PsuI RGATCY 6 cut(s) 547, 568, 646, 724, 940, 2438
PsyI GACNNNGTC 1 cut(s) 2277
PvuII CAGCTG 1 cut(s) 467
RsaI GTAC 1 cut(s) 483
RsaNI GTAC 1 cut(s) 482
SalI GTCGAC 1 cut(s) 34
SaqAI TTAA 5 cut(s) 597, 1623, 1929, 2043, 2081
SatI GCNGC 7 cut(s) 56, 147, 629, 707, 762, 923, 2179
Sau96I GGNCC 9 cut(s) 1858, 1963, 2525, 2552, 2579, 2606, 2633, 2861, 2879
SbfI CCTGCAGG 1 cut(s) 451
SchI GAGTC 5 cut(s) 100, 212, 968, 1061, 2033
ScrFI CCNGG 2 cut(s) 295, 1679
SdaI CCTGCAGG 1 cut(s) 451
SduI GDGCHC 1 cut(s) 2455
SfaNI GCATC 6 cut(s) 323, 374, 1231, 1732, 2503, 2706
SfcI CTRYAG 5 cut(s) 447, 591, 747, 885, 1977
SfuI TTCGAA 1 cut(s) 2161
SgrAI CRCCGGYG 1 cut(s) 58
SgrDI CGTCGACG 1 cut(s) 34
SinI GGWCC 2 cut(s) 2861, 2879
SmiI ATTTAAAT 1 cut(s) 1930
Sse8387I CCTGCAGG 1 cut(s) 451
Sse9I AATT 8 cut(s) 907, 966, 1197, 1925, 2163, 2239, 2378, 2770
SspI AATATT 3 cut(s) 1875, 1947, 2855
SspMI CTAG 4 cut(s) 245, 552, 2016, 2748
StyD4I CCNGG 2 cut(s) 293, 1677
StyI CCWWGG 1 cut(s) 2170
SwaI ATTTAAAT 1 cut(s) 1930
TaaI ACNGT 4 cut(s) 33, 118, 342, 2270
TaiI ACGT 8 cut(s) 1383, 1580, 1607, 1693, 1954, 2152, 2278, 2683
TaqI TCGA 6 cut(s) 35, 120, 368, 1534, 1687, 2161
TasI AATT 8 cut(s) 907, 966, 1197, 1925, 2163, 2239, 2378, 2770
TauI GCSGC 4 cut(s) 58, 631, 709, 925
TfiI GAWTC 6 cut(s) 587, 665, 743, 821, 1435, 2867
Tru1I TTAA 5 cut(s) 597, 1623, 1929, 2043, 2081
Tru9I TTAA 5 cut(s) 597, 1623, 1929, 2043, 2081
TscAI CASTG 3 cut(s) 1567, 2070, 2221
TseFI GTSAC 6 cut(s) 791, 2540, 2567, 2594, 2621, 2648
TseI GCWGC 3 cut(s) 146, 761, 2178
Tsp45I GTSAC 6 cut(s) 791, 2540, 2567, 2594, 2621, 2648
TspGWI ACGGA 1 cut(s) 84
TspRI CASTG 3 cut(s) 1567, 2070, 2221
Tth111I GACNNNGTC 1 cut(s) 2277
Van91I CCANNNNNTGG 1 cut(s) 2615
VpaK11BI GGWCC 2 cut(s) 2861, 2879
XagI CCTNNNNNAGG 1 cut(s) 2460
XapI RAATTY 2 cut(s) 907, 2239
XceI RCATGY 3 cut(s) 1496, 2040, 2261
XmiI GTMKAC 3 cut(s) 35, 1976, 2752
XmnI GAANNNNTTC 2 cut(s) 289, 1227
XspI CTAG 4 cut(s) 245, 552, 2016, 2748
Zsp2I ATGCAT 2 cut(s) 367, 1468
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.