Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0012562

Physical Location & Seq

Genomic Coordinates Forward (+)

7233831 .. 7237642

Gene Structure 3812 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g13160.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1293 bp

ATGGGGAAGAACACAACCTTGATGCTGCTGCTGGTGTTCTGGCTCGCTACGACGTCGGTTTGGGCGGAGCAGCAGGCTGCTCAGGATGCCGACCCAAACAGCGAATCATGGACCGAGTGGGTCACTAACAAGCTATCACAGGGGCTCGGTCTCAAGCAGGAGAATGCAGAGAATGTGGTGGACCAAGCTGGGGATGCAGCCTCTATGGCTAGGGAAAGAGTGGAAAATTTTGGATCAAAATCGAAGTCCGAGGCGCATGATGCAGCCAACTATGCCCGTGACAATTGGGATCAGTCAATAAGAATGCCTACTGAGAGAGCTGGCAATGCTGCCCAAGAGACGATGGCACAAGGAGTTGAAGTCGGAAAACATAAAGTAGCCAATGCCTATGATGATGCTAAAGAGAAACTTAATAGAGGGAAAGACTTTGCATCTGATAAAGCTTATGATTCCAAGGAGGCAACGGCAAACATGTATGGGGAGGCTAAGCAGAAAATGAATTCAGCTTCGCATGTTGCATCAAATAAAGCTTCTGATGCACAAGAAGCAGCGTCGAATATGTATGGGGAAGTAAAGCAGAAAGCGAACTCAGCTTCAAACATGGCTTCAGATAAAGCTTCTGGTGCCAAAGAGACGGCAGAAAGTATGTATGGGGAAGCTAAGGAGAGAATGAATTGGGCTACAGATATGGCTTCAGATATAGCTTATGATGCAAAGGAGGGAGCAGCCAATATGTATGGGGCAGCCAAGCAAAAAATGGGTTCAGCTTCAAATTTGGCTTCAGATAAAGCTTATGATGCCAAAGAGACGACTGCTAATATGTATGGGGAAGCCAAGGACAGAATGAATCATGCTTCAAATGTTGCTTCAGATAGGGTCAATGATGCCAAAGAGTCGGTGAAGGGGGCCATTGGTTGTGGTACGGACAAAGCAGCAGGTGCATATGGTCATGCAAAGAATACAATGCAAACGGCTACGAGTACTGCGGCTGACAAAGCCAATGATGCAATGGAATATGGAAGAGATAGAGCTGCAGATGCGTATGATGGAGCAAAAGAGAAAATGAACTTGGGCTCTGATAAGGCCAATGATGCCAAAGACAGGGTAGCAGGAGGAGTCGAGTATGGAAGAGAAAAGGTTGCCAATTCCTATGATGAGGCAAAACAAAGGGTGGGGGAGGCGTACAGAGAAGCGAAGGATACTGTATCCGAGCATACCAGGCATAACTATGAGGCTGCTAAGGAGAAGGCGTCTCAGGCAACAGGTGATCTTGGGGCTAAGATGAGGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03320 map03320

Pfam Domains

Protein Families

LEA_4

Protein Analysis

431

Amino Acids

46.21

Weight (kDa)

5.43

Isoelectric Point (pI)

21.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012562)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g13160
malus_domestica	MD02G1146200.v1.1 MD15G1260500.v1.1
prunus_persica	Prupe.7G155800_v2.0.a1 Prupe.7G155800_v2.0.a1 Prupe.I002400_v2.0.a1
pyrus_communis	pycom02g11580 pycom15g22770
rosa_chinensis	RchiOBHm_Chr2g0101381
rosa_laevigata	RLG00000017073
rosa_multiflora	Rmu_sc0006128.1_g000010
rosa_roxburghii	Rroxscaffold_2G00141350
rosa_rugosa	Rorug02G0098800 Rorug02G0098900
rosa_samantha	Rh2AG146400 Rh2BG151900 Rh2CG152400 Rh2DG152000
rosa_wichuraiana	Rw2G011410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	926
AatII	GACGTC	1 cut(s)	56
Acc36I	ACCTGC	1 cut(s)	926
AccB1I	GGYRCC	1 cut(s)	623
AciI	CCGC	2 cut(s)	65, 986
AclWI	GGATC	2 cut(s)	241, 297
AcsI	RAATTY	3 cut(s)	226, 499, 772
AcuI	CTGAAG	4 cut(s)	591, 678, 765, 852
AcyI	GRCGYC	2 cut(s)	53, 1250
AfaI	GTAC	3 cut(s)	922, 982, 1184
AfiI	CCNNNNNNNGG	2 cut(s)	190, 1101
AflIII	ACRYGT	1 cut(s)	471
AgsI	TTSAA	4 cut(s)	359, 597, 771, 858
AjnI	CCWGG	1 cut(s)	1217
AjuI	GAANNNNNNNTTGG	2 cut(s)	1052, 1084
Alw26I	GTCTC	5 cut(s)	155, 332, 626, 800, 1257
AlwI	GGATC	2 cut(s)	241, 297
AoxI	GGCC	2 cut(s)	906, 1083
ApoI	RAATTY	3 cut(s)	226, 499, 772
ArsI	GACNNNNNNTTYG	2 cut(s)	230, 262
AspLEI	GCGC	1 cut(s)	256
AspS9I	GGNCC	3 cut(s)	111, 181, 906
AsuHPI	GGTGA	2 cut(s)	910, 1277
AvaII	GGWCC	2 cut(s)	111, 181
BanI	GGYRCC	1 cut(s)	623
BanII	GRGCYC	2 cut(s)	147, 1076
BccI	CCATC	2 cut(s)	337, 1040
BceAI	ACGGC	3 cut(s)	480, 651, 987
BciT130I	CCWGG	1 cut(s)	1219
BciVI	GTATCC	2 cut(s)	1192, 1216
BcoDI	GTCTC	5 cut(s)	155, 332, 626, 800, 1257
BfaI	CTAG	1 cut(s)	210
BfmI	CTRYAG	2 cut(s)	681, 1032
BfuAI	ACCTGC	1 cut(s)	926
BfuI	GTATCC	2 cut(s)	1192, 1216
BglI	GCCNNNNNGGC	1 cut(s)	206
BlpI	GCTNAGC	1 cut(s)	486
BmcAI	AGTACT	1 cut(s)	982
Bme1390I	CCNGG	1 cut(s)	1219
Bme18I	GGWCC	2 cut(s)	111, 181
BmgT120I	GGNCC	3 cut(s)	111, 181, 906
BmiI	GGNNCC	2 cut(s)	625, 907
BmrFI	CCNGG	1 cut(s)	1219
Bpu10I	CCTNAGC	3 cut(s)	81, 660, 1239
Bpu1102I	GCTNAGC	1 cut(s)	486
BpuEI	CTTGAG	1 cut(s)	137
BsaBI	GATNNNNATC	1 cut(s)	238
BsaHI	GRCGYC	2 cut(s)	53, 1250
BsaI	GGTCTC	1 cut(s)	155
BsaJI	CCNNGG	3 cut(s)	249, 453, 834
BsaXI	ACNNNNNCTCC	4 cut(s)	345, 375, 1235, 1265
Bsc4I	CCNNNNNNNGG	2 cut(s)	190, 1101
Bse3DI	GCAATG	2 cut(s)	331, 1014
Bse8I	GATNNNNATC	1 cut(s)	238
BseBI	CCWGG	1 cut(s)	1219
BseDI	CCNNGG	3 cut(s)	249, 453, 834
BseGI	GGATG	2 cut(s)	91, 199
BseJI	GATNNNNATC	1 cut(s)	238
BseLI	CCNNNNNNNGG	2 cut(s)	190, 1101
BseMI	GCAATG	2 cut(s)	331, 1014
BseMII	CTCAG	4 cut(s)	95, 303, 603, 1268
BseRI	GAGGAG	1 cut(s)	1128
BseYI	CCCAGC	1 cut(s)	188
BshFI	GGCC	2 cut(s)	908, 1085
BshNI	GGYRCC	1 cut(s)	623
BslI	CCNNNNNNNGG	2 cut(s)	190, 1101
BsmAI	GTCTC	5 cut(s)	155, 332, 626, 800, 1257
BsmBI	CGTCTC	4 cut(s)	332, 626, 800, 1257
BsmI	GAATGC	2 cut(s)	169, 309
BsnI	GGCC	2 cut(s)	908, 1085
Bso31I	GGTCTC	1 cut(s)	155
Bsp1286I	GDGCHC	2 cut(s)	147, 1076
Bsp143I	GATC	3 cut(s)	233, 289, 1267
Bsp1720I	GCTNAGC	1 cut(s)	486
BspACI	CCGC	2 cut(s)	65, 986
BspANI	GGCC	2 cut(s)	908, 1085
BspCNI	CTCAG	4 cut(s)	94, 304, 602, 1267
BspLI	GGNNCC	2 cut(s)	625, 907
BspMAI	CTGCAG	1 cut(s)	1036
BspMI	ACCTGC	1 cut(s)	926
BspPI	GGATC	2 cut(s)	241, 297
BspT107I	GGYRCC	1 cut(s)	623
BspTNI	GGTCTC	1 cut(s)	155
BsrDI	GCAATG	2 cut(s)	331, 1014
BssECI	CCNNGG	3 cut(s)	249, 453, 834
BssMI	GATC	3 cut(s)	233, 289, 1267
BssNI	GRCGYC	2 cut(s)	53, 1250
BssT1I	CCWWGG	2 cut(s)	453, 834
Bst2UI	CCWGG	1 cut(s)	1219
Bst4CI	ACNGT	1 cut(s)	1204
Bst6I	CTCTTC	2 cut(s)	1015, 1123
BstACI	GRCGYC	2 cut(s)	53, 1250
BstAPI	GCANNNNNTGC	1 cut(s)	938
BstC8I	GCNNGC	3 cut(s)	45, 75, 322
BstDEI	CTNAG	8 cut(s)	81, 312, 486, 589, 660, 1239, 1254, 1278
BstF5I	GGATG	2 cut(s)	91, 199
BstHHI	GCGC	1 cut(s)	256
BstKTI	GATC	3 cut(s)	236, 292, 1270
BstMAI	GTCTC	5 cut(s)	155, 332, 626, 800, 1257
BstMBI	GATC	3 cut(s)	233, 289, 1267
BstNI	CCWGG	1 cut(s)	1219
BstNSI	RCATGY	2 cut(s)	475, 515
BstSCI	CCNGG	1 cut(s)	1217
BstSFI	CTRYAG	2 cut(s)	681, 1032
BsuI	GTATCC	2 cut(s)	1192, 1216
BsuRI	GGCC	2 cut(s)	908, 1085
BtsCI	GGATG	2 cut(s)	91, 199
BveI	ACCTGC	1 cut(s)	926
Cac8I	GCNNGC	3 cut(s)	45, 75, 322
CfoI	GCGC	1 cut(s)	256
Cfr13I	GGNCC	3 cut(s)	111, 181, 906
CseI	GACGC	2 cut(s)	540, 1239
Csp6I	GTAC	3 cut(s)	921, 981, 1183
CviAII	CATG	7 cut(s)	108, 257, 472, 512, 601, 851, 950
CviQI	GTAC	3 cut(s)	921, 981, 1183
DdeI	CTNAG	8 cut(s)	81, 312, 486, 589, 660, 1239, 1254, 1278
DpnI	GATC	3 cut(s)	235, 291, 1269
DpnII	GATC	3 cut(s)	233, 289, 1267
Eam1104I	CTCTTC	2 cut(s)	1015, 1123
EarI	CTCTTC	2 cut(s)	1015, 1123
EciI	GGCGGA	1 cut(s)	80
Eco130I	CCWWGG	2 cut(s)	453, 834
Eco24I	GRGCYC	2 cut(s)	147, 1076
Eco31I	GGTCTC	1 cut(s)	155
Eco47I	GGWCC	2 cut(s)	111, 181
Eco57I	CTGAAG	4 cut(s)	591, 678, 765, 852
EcoRI	GAATTC	1 cut(s)	499
EcoRII	CCWGG	1 cut(s)	1217
EcoT14I	CCWWGG	2 cut(s)	453, 834
EcoT38I	GRGCYC	2 cut(s)	147, 1076
ErhI	CCWWGG	2 cut(s)	453, 834
Esp3I	CGTCTC	4 cut(s)	332, 626, 800, 1257
FaeI	CATG	7 cut(s)	111, 260, 475, 515, 604, 854, 953
FalI	AAGNNNNNCTT	2 cut(s)	393, 425
FatI	CATG	7 cut(s)	107, 256, 471, 511, 600, 850, 949
FauNDI	CATATG	1 cut(s)	943
FokI	GGATG	2 cut(s)	98, 206
FriOI	GRGCYC	2 cut(s)	147, 1076
FspBI	CTAG	1 cut(s)	210
GlaI	GCGC	1 cut(s)	255
GsaI	CCCAGC	1 cut(s)	192
HaeIII	GGCC	2 cut(s)	908, 1085
HgaI	GACGC	2 cut(s)	540, 1239
HhaI	GCGC	1 cut(s)	256
Hin1I	GRCGYC	2 cut(s)	53, 1250
Hin1II	CATG	7 cut(s)	111, 260, 475, 515, 604, 854, 953
Hin6I	GCGC	1 cut(s)	254
HinP1I	GCGC	1 cut(s)	254
HindIII	AAGCTT	4 cut(s)	441, 528, 615, 789
HinfI	GANTC	5 cut(s)	104, 449, 847, 893, 1116
HphI	GGTGA	2 cut(s)	910, 1277
Hpy166II	GTNNAC	1 cut(s)	181
Hpy188III	TCNNGA	1 cut(s)	83
Hpy8I	GTNNAC	1 cut(s)	181
Hpy99I	CGWCG	3 cut(s)	55, 58, 556
HpyAV	CCTTC	3 cut(s)	895, 1189, 1240
HpyCH4III	ACNGT	1 cut(s)	1204
HpyCH4IV	ACGT	1 cut(s)	53
HpyF3I	CTNAG	8 cut(s)	81, 312, 486, 589, 660, 1239, 1254, 1278
HpySE526I	ACGT	1 cut(s)	53
Hsp92I	GRCGYC	2 cut(s)	53, 1250
Hsp92II	CATG	7 cut(s)	111, 260, 475, 515, 604, 854, 953
HspAI	GCGC	1 cut(s)	254
Kzo9I	GATC	3 cut(s)	233, 289, 1267
LmnI	GCTCC	3 cut(s)	67, 722, 1049
MaeI	CTAG	1 cut(s)	210
MaeII	ACGT	1 cut(s)	53
MaeIII	GTNAC	2 cut(s)	121, 278
MalI	GATC	3 cut(s)	235, 291, 1269
MboI	GATC	3 cut(s)	233, 289, 1267
MboII	GAAGA	3 cut(s)	19, 1032, 1140
MfeI	CAATTG	1 cut(s)	283
MhlI	GDGCHC	2 cut(s)	147, 1076
MluCI	AATT	7 cut(s)	226, 283, 499, 673, 772, 1144, 1288
MlyI	GAGTC	2 cut(s)	902, 1125
MmeI	TCCRAC	1 cut(s)	343
MseI	TTAA	1 cut(s)	411
MslI	CAYNNNNRTG	1 cut(s)	1227
MspR9I	CCNGG	1 cut(s)	1219
MunI	CAATTG	1 cut(s)	283
Mva1269I	GAATGC	2 cut(s)	169, 309
MvaI	CCWGG	1 cut(s)	1219
NdeI	CATATG	1 cut(s)	943
NdeII	GATC	3 cut(s)	233, 289, 1267
NlaIII	CATG	7 cut(s)	111, 260, 475, 515, 604, 854, 953
NlaIV	GGNNCC	2 cut(s)	625, 907
NmuCI	GTSAC	2 cut(s)	121, 278
NspI	RCATGY	2 cut(s)	475, 515
PaqCI	CACCTGC	1 cut(s)	926
PciI	ACATGT	1 cut(s)	471
PctI	GAATGC	2 cut(s)	169, 309
PfeI	GAWTC	3 cut(s)	104, 449, 847
PleI	GAGTC	2 cut(s)	901, 1124
PpsI	GAGTC	2 cut(s)	901, 1124
PscI	ACATGT	1 cut(s)	471
Psp6I	CCWGG	1 cut(s)	1217
PspFI	CCCAGC	1 cut(s)	188
PspGI	CCWGG	1 cut(s)	1217
PspN4I	GGNNCC	2 cut(s)	625, 907
PspPI	GGNCC	3 cut(s)	111, 181, 906
PstI	CTGCAG	1 cut(s)	1036
RsaI	GTAC	3 cut(s)	922, 982, 1184
RsaNI	GTAC	3 cut(s)	921, 981, 1183
RseI	CAYNNNNRTG	1 cut(s)	1227
SaqAI	TTAA	1 cut(s)	411
Sau3AI	GATC	3 cut(s)	233, 289, 1267
Sau96I	GGNCC	3 cut(s)	111, 181, 906
ScaI	AGTACT	1 cut(s)	982
SchI	GAGTC	2 cut(s)	902, 1125
ScrFI	CCNGG	1 cut(s)	1219
SduI	GDGCHC	2 cut(s)	147, 1076
SfcI	CTRYAG	2 cut(s)	681, 1032
SinI	GGWCC	2 cut(s)	111, 181
SmiMI	CAYNNNNRTG	1 cut(s)	1227
SmlI	CTYRAG	1 cut(s)	152
SmoI	CTYRAG	1 cut(s)	152
Sse9I	AATT	7 cut(s)	226, 283, 499, 673, 772, 1144, 1288
SsiI	CCGC	2 cut(s)	65, 986
SspMI	CTAG	1 cut(s)	210
StyD4I	CCNGG	1 cut(s)	1217
StyI	CCWWGG	2 cut(s)	453, 834
TaaI	ACNGT	1 cut(s)	1204
TaiI	ACGT	1 cut(s)	56
TaqI	TCGA	3 cut(s)	242, 554, 1119
TaqII	GACCGA	2 cut(s)	128, 137
TasI	AATT	7 cut(s)	226, 283, 499, 673, 772, 1144, 1288
TatI	WGTACW	1 cut(s)	980
TauI	GCSGC	1 cut(s)	989
TfiI	GAWTC	3 cut(s)	104, 449, 847
Tru1I	TTAA	1 cut(s)	411
Tru9I	TTAA	1 cut(s)	411
TseFI	GTSAC	2 cut(s)	121, 278
Tsp45I	GTSAC	2 cut(s)	121, 278
TspDTI	ATGAA	4 cut(s)	512, 686, 860, 1079
TspGWI	ACGGA	1 cut(s)	938
VpaK11BI	GGWCC	2 cut(s)	111, 181
XapI	RAATTY	3 cut(s)	226, 499, 772
XceI	RCATGY	2 cut(s)	475, 515
XcmI	CCANNNNNNNNNTGG	2 cut(s)	754, 1006
XspI	CTAG	1 cut(s)	210
ZraI	GACGTC	1 cut(s)	54
ZrmI	AGTACT	1 cut(s)	982

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.