Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0012562

Physical Location & Seq

Genomic Coordinates Forward (+)

22225309 .. 22226469

Gene Structure 1161 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1260500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGCAGGAAAGTTTTGTTGACAGCTTTGACTCATCTATAAGAATGCCTACCGATAAGGTTGACAATGCCAAAGATACGGTGAGAGGAGCAATGGATTCAGGAATGGAGGGAGTAGCAAATGCCTATGGTGAGGCAAAAGATACAATGAATAAGGGTGTGGGTGCCGCTTCTGATAAGGCTCGTGAAGCAGTGGAGTATGGAAAAGAAACAGCTGTCAATGCATATAATACTGATAAAGTTGACAATGCCAAAGAGACAGTAAGAGGGGCAGTAGGATGTGGAGTGGACAGAGCAGCAAATGCCTATGGTGATGCAAAAAATACAATGAATAGCGCTATGGGTTTGGTTTCTGATAAGACTAATGATGCAATGGAGTATGGAAAAGAAAGAGCCGCCGATGCATATAATACCAATAGAGTTGAGAATGCTAAAGAGACAGTGAAAGGGGCATTAGGTTCGGGAATGGACAAACCCACAAATGCCTATGGAGAAGCAAAGAATACAATGAATAGGGCTATGGACACAGCTTCTGGTAAGGCTAATGGTGCAGTGGAGTATGGAAAAGAAACAGCTTCCAATGCATATAGTAGCGATAGACTCGATAATGCCAAAGAGACGGCGAAGGGGGCAATGGGTTCCAAGACGGACAGAGCAGCAAATGCCTACGGTGAAGCAAAGAATACAGTGAATCGGGCAATGGATATGGCGTCTGACAAGACTAATGATGCAATGGAATATGGTAAAGAAAGAACTGCCAATACATATGATGGAGCCAAAGAGACGATGAACATGGCCTCAGATAAGGCCTATGATGCCAAAGAAAAGGTGGCGGGAGGAGTTGATTATGGAAGGGAAAGAGCAGTGAACTCTTATGATGAAGCAAAACAAAAGGTTGGGGAGTCATACGTGTCTGCTAAGGATAGTACGACTTCACATGCCAAGGATAACTATGAGGCTGCCAAGGGAGGAATCGATTATGGAAGGGAAAGAGCAGCGGATGCATATGATGAAGCCCAACAAAAGGTTGGGGAGTCGTACGCGTCTGCTAAGGATAGTATGACTTCAAGTGCAAGGCAGAACTATGAGGCTGCAAAGGAGACCGCCTCGCAAGCTGCTGGTGATCTTGGGGCTACGATGAGGAATGCAGGTTCGGGGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03320 map03320

Pfam Domains

Protein Families

LEA_4

Protein Analysis

387

Amino Acids

40.81

Weight (kDa)

4.99

Isoelectric Point (pI)

5.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012562)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g13160
malus_domestica	MD02G1146200.v1.1 MD15G1260500.v1.1
prunus_persica	Prupe.7G155800_v2.0.a1 Prupe.7G155800_v2.0.a1 Prupe.I002400_v2.0.a1
pyrus_communis	pycom02g11580 pycom15g22770
rosa_chinensis	RchiOBHm_Chr2g0101381
rosa_laevigata	RLG00000017073
rosa_multiflora	Rmu_sc0006128.1_g000010
rosa_roxburghii	Rroxscaffold_2G00141350
rosa_rugosa	Rorug02G0098800 Rorug02G0098900
rosa_samantha	Rh2AG146400 Rh2BG151900 Rh2CG152400 Rh2DG152000
rosa_wichuraiana	Rw2G011410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1136
AccB1I	GGYRCC	1 cut(s)	161
AccII	CGCG	1 cut(s)	1040
AciI	CCGC	5 cut(s)	165, 393, 830, 995, 1101
AcyI	GRCGYC	1 cut(s)	707
AfaI	GTAC	2 cut(s)	925, 1037
AfeI	AGCGCT	1 cut(s)	334
AfiI	CCNNNNNNNGG	1 cut(s)	1021
AflIII	ACRYGT	2 cut(s)	906, 1038
AgsI	TTSAA	1 cut(s)	1065
AloI	GAACNNNNNNTCC	1 cut(s)	1132
AluBI	AGCT	5 cut(s)	24, 212, 527, 572, 1112
AluI	AGCT	5 cut(s)	24, 212, 527, 572, 1112
Alw26I	GTCTC	5 cut(s)	248, 428, 608, 773, 1091
AlwNI	CAGNNNCTG	1 cut(s)	530
Aor51HI	AGCGCT	1 cut(s)	334
AoxI	GGCC	2 cut(s)	792, 804
ApeKI	GCWGC	6 cut(s)	293, 653, 956, 992, 1088, 1112
AspLEI	GCGC	1 cut(s)	335
AsuHPI	GGTGA	5 cut(s)	91, 140, 320, 680, 1130
BanI	GGYRCC	1 cut(s)	161
BauI	CACGAG	1 cut(s)	180
BbvI	GCAGC	6 cut(s)	305, 665, 943, 1004, 1075, 1099
BccI	CCATC	1 cut(s)	761
BceAI	ACGGC	1 cut(s)	633
BcgI	CGANNNNNNTGC	2 cut(s)	438, 472
BcoDI	GTCTC	5 cut(s)	248, 428, 608, 773, 1091
BfoI	RGCGCY	1 cut(s)	336
BfuAI	ACCTGC	1 cut(s)	1136
BisI	GCNGC	8 cut(s)	165, 294, 393, 654, 957, 993, 1089, 1113
BlsI	GCNGC	8 cut(s)	166, 295, 394, 655, 958, 994, 1090, 1114
BmiI	GGNNCC	3 cut(s)	163, 637, 772
BmsI	GCATC	6 cut(s)	301, 355, 388, 715, 802, 988
BplI	GAGNNNNNCTC	2 cut(s)	1088, 1120
Bpu10I	CCTNAGC	2 cut(s)	915, 1047
Bsa29I	ATCGAT	1 cut(s)	972
BsaAI	YACGTR	1 cut(s)	907
BsaHI	GRCGYC	1 cut(s)	707
BsaI	GGTCTC	1 cut(s)	1091
BsaJI	CCNNGG	2 cut(s)	939, 960
Bsc4I	CCNNNNNNNGG	1 cut(s)	1021
Bse3DI	GCAATG	5 cut(s)	96, 375, 636, 702, 735
BseCI	ATCGAT	1 cut(s)	972
BseDI	CCNNGG	2 cut(s)	939, 960
BseGI	GGATG	2 cut(s)	281, 1003
BseLI	CCNNNNNNNGG	1 cut(s)	1021
BseMI	GCAATG	5 cut(s)	96, 375, 636, 702, 735
BseMII	CTCAG	1 cut(s)	810
BseRI	GAGGAG	2 cut(s)	99, 849
BseXI	GCAGC	6 cut(s)	305, 665, 943, 1004, 1075, 1099
BsgI	GTGCAG	1 cut(s)	567
Bsh1236I	CGCG	1 cut(s)	1040
BshFI	GGCC	2 cut(s)	794, 806
BshNI	GGYRCC	1 cut(s)	161
BshVI	ATCGAT	1 cut(s)	972
BsiWI	CGTACG	1 cut(s)	1035
BslI	CCNNNNNNNGG	1 cut(s)	1021
BsmAI	GTCTC	5 cut(s)	248, 428, 608, 773, 1091
BsmBI	CGTCTC	2 cut(s)	608, 773
BsmI	GAATGC	3 cut(s)	48, 430, 1147
BsnI	GGCC	2 cut(s)	794, 806
Bso31I	GGTCTC	1 cut(s)	1091
Bsp143I	GATC	1 cut(s)	1120
BspACI	CCGC	5 cut(s)	165, 393, 830, 995, 1101
BspANI	GGCC	2 cut(s)	794, 806
BspCNI	CTCAG	1 cut(s)	809
BspDI	ATCGAT	1 cut(s)	972
BspFNI	CGCG	1 cut(s)	1040
BspLI	GGNNCC	3 cut(s)	163, 637, 772
BspMI	ACCTGC	1 cut(s)	1136
BspT107I	GGYRCC	1 cut(s)	161
BspTNI	GGTCTC	1 cut(s)	1091
BsrDI	GCAATG	5 cut(s)	96, 375, 636, 702, 735
BssECI	CCNNGG	2 cut(s)	939, 960
BssMI	GATC	1 cut(s)	1120
BssNI	GRCGYC	1 cut(s)	707
BssSI	CACGAG	1 cut(s)	180
BssT1I	CCWWGG	2 cut(s)	939, 960
Bst2BI	CACGAG	1 cut(s)	180
Bst4CI	ACNGT	5 cut(s)	79, 259, 439, 668, 685
BstACI	GRCGYC	1 cut(s)	707
BstAPI	GCANNNNNTGC	3 cut(s)	299, 659, 998
BstBAI	YACGTR	1 cut(s)	907
BstC8I	GCNNGC	1 cut(s)	1110
BstDEI	CTNAG	3 cut(s)	796, 915, 1047
BstF5I	GGATG	2 cut(s)	281, 1003
BstFNI	CGCG	1 cut(s)	1040
BstH2I	RGCGCY	1 cut(s)	336
BstHHI	GCGC	1 cut(s)	335
BstKTI	GATC	1 cut(s)	1123
BstMAI	GTCTC	5 cut(s)	248, 428, 608, 773, 1091
BstMBI	GATC	1 cut(s)	1120
BstNSI	RCATGY	1 cut(s)	938
BstUI	CGCG	1 cut(s)	1040
BstV1I	GCAGC	6 cut(s)	305, 665, 943, 1004, 1075, 1099
Bsu15I	ATCGAT	1 cut(s)	972
BsuRI	GGCC	2 cut(s)	794, 806
BsuTUI	ATCGAT	1 cut(s)	972
BtsCI	GGATG	2 cut(s)	281, 1003
BtsI	GCAGTG	3 cut(s)	195, 555, 867
BtsIMutI	CAGTG	5 cut(s)	195, 444, 555, 690, 867
BveI	ACCTGC	1 cut(s)	1136
Cac8I	GCNNGC	1 cut(s)	1110
CaiI	CAGNNNCTG	1 cut(s)	530
CfoI	GCGC	1 cut(s)	335
ClaI	ATCGAT	1 cut(s)	972
CseI	GACGC	2 cut(s)	696, 1029
Csp6I	GTAC	2 cut(s)	924, 1036
CviAII	CATG	2 cut(s)	790, 935
CviQI	GTAC	2 cut(s)	924, 1036
DdeI	CTNAG	3 cut(s)	796, 915, 1047
DpnI	GATC	1 cut(s)	1122
DpnII	GATC	1 cut(s)	1120
Eco130I	CCWWGG	2 cut(s)	939, 960
Eco147I	AGGCCT	1 cut(s)	806
Eco31I	GGTCTC	1 cut(s)	1091
Eco47III	AGCGCT	1 cut(s)	334
EcoT14I	CCWWGG	2 cut(s)	939, 960
EcoT22I	ATGCAT	4 cut(s)	223, 403, 583, 1003
ErhI	CCWWGG	2 cut(s)	939, 960
Esp3I	CGTCTC	2 cut(s)	608, 773
FaeI	CATG	2 cut(s)	793, 938
FatI	CATG	2 cut(s)	789, 934
FauI	CCCGC	1 cut(s)	823
FauNDI	CATATG	2 cut(s)	763, 1003
Fnu4HI	GCNGC	8 cut(s)	165, 294, 393, 654, 957, 993, 1089, 1113
FokI	GGATG	2 cut(s)	288, 1010
Fsp4HI	GCNGC	8 cut(s)	165, 294, 393, 654, 957, 993, 1089, 1113
GlaI	GCGC	1 cut(s)	334
GluI	GCNGC	8 cut(s)	165, 294, 393, 654, 957, 993, 1089, 1113
HaeII	RGCGCY	1 cut(s)	336
HaeIII	GGCC	2 cut(s)	794, 806
HgaI	GACGC	2 cut(s)	696, 1029
HhaI	GCGC	1 cut(s)	335
Hin1I	GRCGYC	1 cut(s)	707
Hin1II	CATG	2 cut(s)	793, 938
Hin6I	GCGC	1 cut(s)	333
HinP1I	GCGC	1 cut(s)	333
HincII	GTYRAC	3 cut(s)	19, 61, 241
HindII	GTYRAC	3 cut(s)	19, 61, 241
HinfI	GANTC	7 cut(s)	29, 95, 597, 688, 899, 969, 1031
HphI	GGTGA	5 cut(s)	91, 140, 320, 680, 1130
Hpy166II	GTNNAC	5 cut(s)	19, 61, 241, 286, 865
Hpy188I	TCNGA	4 cut(s)	172, 352, 712, 799
Hpy188III	TCNNGA	3 cut(s)	99, 182, 459
Hpy8I	GTNNAC	5 cut(s)	19, 61, 241, 286, 865
HpyAV	CCTTC	3 cut(s)	616, 843, 975
HpyCH4III	ACNGT	5 cut(s)	79, 259, 439, 668, 685
HpyCH4IV	ACGT	1 cut(s)	906
HpyF3I	CTNAG	3 cut(s)	796, 915, 1047
HpySE526I	ACGT	1 cut(s)	906
Hsp92I	GRCGYC	1 cut(s)	707
Hsp92II	CATG	2 cut(s)	793, 938
HspAI	GCGC	1 cut(s)	333
Kzo9I	GATC	1 cut(s)	1120
LmnI	GCTCC	2 cut(s)	86, 770
LpnPI	CCDG	4 cut(s)	84, 516, 1101, 1131
Lsp1109I	GCAGC	6 cut(s)	305, 665, 943, 1004, 1075, 1099
LweI	GCATC	6 cut(s)	301, 355, 388, 715, 802, 988
MaeII	ACGT	1 cut(s)	906
MalI	GATC	1 cut(s)	1122
MboI	GATC	1 cut(s)	1120
MluI	ACGCGT	1 cut(s)	1038
MlyI	GAGTC	4 cut(s)	23, 591, 908, 1040
Mph1103I	ATGCAT	4 cut(s)	223, 403, 583, 1003
MspA1I	CMGCKG	2 cut(s)	212, 995
Mva1269I	GAATGC	3 cut(s)	48, 430, 1147
MvnI	CGCG	1 cut(s)	1040
NdeI	CATATG	2 cut(s)	763, 1003
NdeII	GATC	1 cut(s)	1120
NlaIII	CATG	2 cut(s)	793, 938
NlaIV	GGNNCC	3 cut(s)	163, 637, 772
NsiI	ATGCAT	4 cut(s)	223, 403, 583, 1003
NspI	RCATGY	1 cut(s)	938
PceI	AGGCCT	1 cut(s)	806
PctI	GAATGC	3 cut(s)	48, 430, 1147
PfeI	GAWTC	3 cut(s)	95, 688, 969
Pfl23II	CGTACG	1 cut(s)	1035
PkrI	GCNGC	8 cut(s)	166, 295, 394, 655, 958, 994, 1090, 1114
PleI	GAGTC	4 cut(s)	23, 591, 907, 1039
PpsI	GAGTC	4 cut(s)	23, 591, 907, 1039
Ppu21I	YACGTR	1 cut(s)	907
PspLI	CGTACG	1 cut(s)	1035
PspN4I	GGNNCC	3 cut(s)	163, 637, 772
PsrI	GAACNNNNNNTAC	2 cut(s)	742, 774
PstNI	CAGNNNCTG	1 cut(s)	530
PvuII	CAGCTG	1 cut(s)	212
RsaI	GTAC	2 cut(s)	925, 1037
RsaNI	GTAC	2 cut(s)	924, 1036
SatI	GCNGC	8 cut(s)	165, 294, 393, 654, 957, 993, 1089, 1113
Sau3AI	GATC	1 cut(s)	1120
SchI	GAGTC	4 cut(s)	23, 591, 908, 1040
SfaNI	GCATC	6 cut(s)	301, 355, 388, 715, 802, 988
SseBI	AGGCCT	1 cut(s)	806
SsiI	CCGC	5 cut(s)	165, 393, 830, 995, 1101
StuI	AGGCCT	1 cut(s)	806
StyI	CCWWGG	2 cut(s)	939, 960
TaaI	ACNGT	5 cut(s)	79, 259, 439, 668, 685
TaiI	ACGT	1 cut(s)	909
TaqI	TCGA	2 cut(s)	600, 972
TauI	GCSGC	2 cut(s)	167, 395
TfiI	GAWTC	3 cut(s)	95, 688, 969
TscAI	CASTG	5 cut(s)	195, 444, 555, 690, 867
TseI	GCWGC	6 cut(s)	293, 653, 956, 992, 1088, 1112
TspDTI	ATGAA	6 cut(s)	161, 341, 521, 800, 891, 1023
TspGWI	ACGGA	1 cut(s)	659
TspRI	CASTG	5 cut(s)	195, 444, 555, 690, 867
XceI	RCATGY	1 cut(s)	938
XcmI	CCANNNNNNNNNTGG	2 cut(s)	823, 1022
Zsp2I	ATGCAT	4 cut(s)	223, 403, 583, 1003

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.