Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0012562

Physical Location & Seq

Genomic Coordinates Forward (+)

8321911 .. 8327505

Gene Structure 5595 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0098800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2085 bp

ATGGTGACTGGTTCTGTCCAGCTTGCTGTTGTGGACTTTGTGGCCAAAGCATACTCACGAAAGACAGAAAACCTACTATGCATTATCGTAACTGTGGTCAATGCGAGCGTGAATGTAGATCACACTGGGTGCCTCAGGAAAATAAGTGCAGATATGTTGGAAAGTGATCCGAAAGGGAACTGGTTTTGCAGCGAGAGCTGTAAAAAGATATACTTAGGCCTCCACGAGTGTTTAGGGAAAAAAATTCCAGCGGGTCGTGACAGTCTAACCTGGTCACTATTGAAGTCTGACAGTAAAGATACTAATAAGCCTTATGATGCCCTCATGAGGGAGACTCACAGCAGGCTCAATCTTGCCCTTATTGTGATGCACGAGTGCTTTAAGCCTCTTAAGGAACCTCATAATGATACAGATCTTGCAGAAGATATCATATTCAGTAGAGGGTCAGATCGTAATCGCATGAACTGTCAAGGGTTTTATACAATGCTTTTGGAGAGAAATGATGAACTAATAACTGTAGCTACTGTAAGGATCTATGGAGCACAGGTAGCAGAAATACCACTTGTTGGTACCAGATTGCAATATCGTCGACAGGGAATGTGTCATTTATTAATGTTTCTGCTGGAAAAGATGCTAATGGATTTAGGCGTGGAGAGATTGGTCTTGCCCAGTGTCCCCAGTTTACTAGACCATTGGTCCTCATTTGGATTTTTAAATATGACGTATTCTCAGAGGGTACAGATTCTAGATTATAGATTTGTGGAGTTTCAGGATACCATTATATGTCAGAAAAGTTTAATGAAGACTCCTCGAGCTAAACCCTACCCATCTAAAGGAACTCCACTTGTTATCTCTGGAAGTGTTGATAATGTTGAATCTAATGAGTCAAGAGGTGATAATGTCTCATTCACATGGAAAATTGACAATTTCTCTACTTTGCTGTGTATCAAGAAGTACTCTGACACTTTCCTCACTGGCGGATTATTTTGTATCCAAAGGGGGGGAACTGTAGAAGACTTGTCGGTGTCTTATGATGTTGAAGGTGGCTCAGAGTTGCCACGTGGGTGGTGTAGATATGCGCGACTCCGCACGACCGTGGTTAATCAACTTCAGTGCAGCAAGTCAATAACCAAAGAAAGTAAACATGTTTTCAATAAAAGTGGGAGTGACTGTGGCTTCACATCCTTGGTTCCACCATATGAGTTACATGACCCTAGTAAAGGGTATCTTGTGAATGATACATGTATCATCGAAGCCAATATTACAGTCTGCAAGGGTAGAATTCAGATTTCGCATGCCCAGGAAACTGGCATGGAGTCTGTGGAAGTTCCATATCCTTCTTCAGCAGCACGCAGGGCATCTTGCTTCAAAAATGTGACTGCCGTCCAGGATGCAACAACTCAAGAACACGTTTGCATCGAGGTGTCTGATGCCAGTTCTGAGCCTATGGAAGTTCCAGATCCTTCTTCAGCTACACGGAAGGCAATTAGCTTTCAACATATGACTGACTCCCAGGACACAGCAAGTTCCTATCAAATTATGGAGTTTTCTGATACCAGTACTGACCATTCCCTCGACGAGGAATTTGATGTTGTGTCCTCGACATCACCTTCTGATCTCATGAACTTCAGGGGCTTGGCGGATATAAAGAAAGATTTTGTTCCCCTACTCGAGGAAGTTTGTTCATGGCATCCTTATCTTATTGAATGCCAAAGGGAGAGTAGTCCCCAGTTTACTGAATGGGCATTTACTGCCTTGGGAAAAGTCCTGCATTTTTTGAAGACCAAAAAGGTTAAGGATATGACAACATATGTCTGTAAGGACCTACAAACTTTATGGAATGAGCTGAAGGCCTTCGGATTTGACTTGACATGGCTAAAGCCTCATGTTGAAAGAGCTCTGGGTATGAGTAAGTTTGTGGAAAGCACAAAGGAGCTAAAAAGACTAGCAGAGAATGTAAAGGCTTTGGAGATTGAATCAAAGAGGCTAAAGGCTAAGCTTGTGGCAGCGAGAAGTGATCTGGAGAAGGCCGGACAAGGCTTCGAAGATATTATGGATAGTGAGTTAGGCTATCATAATTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03320 map03320

Pfam Domains

Protein Families

LEA_4

Protein Analysis

694

Amino Acids

78.12

Weight (kDa)

5.93

Isoelectric Point (pI)

35.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IDM1_C	PF23209	127 - 265	5.7e-47	Increased DNA methylation 1, C-terminal domain
MATH_2	PF22486	302 - 421	4.4e-16	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012562)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g13160
malus_domestica	MD02G1146200.v1.1 MD15G1260500.v1.1
prunus_persica	Prupe.7G155800_v2.0.a1 Prupe.7G155800_v2.0.a1 Prupe.I002400_v2.0.a1
pyrus_communis	pycom02g11580 pycom15g22770
rosa_chinensis	RchiOBHm_Chr2g0101381
rosa_laevigata	RLG00000017073
rosa_multiflora	Rmu_sc0006128.1_g000010
rosa_roxburghii	Rroxscaffold_2G00141350
rosa_rugosa	Rorug02G0098800 Rorug02G0098900
rosa_samantha	Rh2AG146400 Rh2BG151900 Rh2CG152400 Rh2DG152000
rosa_wichuraiana	Rw2G011410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	569
AccB1I	GGYRCC	2 cut(s)	129, 569
AccB7I	CCANNNNNTGG	1 cut(s)	566
AccI	GTMKAC	1 cut(s)	589
AccII	CGCG	1 cut(s)	1081
AciI	CCGC	4 cut(s)	251, 978, 1087, 1640
AclWI	GGATC	3 cut(s)	161, 539, 1454
AcoI	YGGCCR	1 cut(s)	42
AcsI	RAATTY	3 cut(s)	243, 1281, 1583
AcuI	CTGAAG	5 cut(s)	1094, 1326, 1452, 1612, 1868
AcvI	CACGTG	1 cut(s)	1061
AdeI	CACNNNGTG	1 cut(s)	129
AfaI	GTAC	4 cut(s)	571, 738, 956, 1561
AfiI	CCNNNNNNNGG	8 cut(s)	327, 328, 566, 833, 1000, 1220, 1579, 1672
AflII	CTTAAG	1 cut(s)	389
AflIII	ACRYGT	3 cut(s)	1144, 1241, 1408
AhdI	GACNNNNNGTC	1 cut(s)	694
AjnI	CCWGG	4 cut(s)	269, 1299, 1386, 1512
AleI	CACNNNNGTG	2 cut(s)	1063, 1094
Alw21I	GWGCWC	2 cut(s)	544, 1900
Alw26I	GTCTC	2 cut(s)	326, 907
AlwI	GGATC	3 cut(s)	161, 539, 1454
Ama87I	CYCGRG	2 cut(s)	810, 1670
AoxI	GGCC	4 cut(s)	42, 217, 1851, 2028
ApeKI	GCWGC	4 cut(s)	189, 1116, 1346, 2006
ApoI	RAATTY	3 cut(s)	243, 1281, 1583
ArsI	GACNNNNNNTTYG	2 cut(s)	1568, 1600
AseI	ATTAAT	1 cut(s)	611
Asp700I	GAANNNNTTC	1 cut(s)	1853
Asp718I	GGTACC	1 cut(s)	569
AspLEI	GCGC	1 cut(s)	1081
AspS9I	GGNCC	2 cut(s)	696, 1822
AsuHPI	GGTGA	3 cut(s)	16, 905, 1599
AsuII	TTCGAA	1 cut(s)	2043
AvaI	CYCGRG	2 cut(s)	810, 1670
AvaII	GGWCC	2 cut(s)	696, 1822
AxyI	CCTNAGG	1 cut(s)	134
BalI	TGGCCA	1 cut(s)	44
BanI	GGYRCC	2 cut(s)	129, 569
BanII	GRGCYC	1 cut(s)	1900
BauI	CACGAG	2 cut(s)	224, 371
BbrPI	CACGTG	1 cut(s)	1061
BbsI	GAAGAC	3 cut(s)	809, 1020, 1787
Bbv12I	GWGCWC	2 cut(s)	544, 1900
BbvI	GCAGC	4 cut(s)	201, 1128, 1358, 2018
BccI	CCATC	1 cut(s)	835
BceAI	ACGGC	1 cut(s)	1367
BcgI	CGANNNNNNTGC	2 cut(s)	569, 603
BciT130I	CCWGG	4 cut(s)	271, 1301, 1388, 1514
BciVI	GTATCC	2 cut(s)	766, 1001
BcoDI	GTCTC	2 cut(s)	326, 907
BfaI	CTAG	4 cut(s)	686, 746, 1215, 1946
BfmI	CTRYAG	2 cut(s)	516, 1008
BfrI	CTTAAG	1 cut(s)	389
BfuI	GTATCC	2 cut(s)	766, 1001
BglII	AGATCT	1 cut(s)	412
BisI	GCNGC	4 cut(s)	190, 1117, 1347, 2007
BlpI	GCTNAGC	1 cut(s)	1995
BlsI	GCNGC	4 cut(s)	191, 1118, 1348, 2008
BmcAI	AGTACT	2 cut(s)	956, 1561
Bme1390I	CCNGG	4 cut(s)	271, 1301, 1388, 1514
Bme18I	GGWCC	2 cut(s)	696, 1822
BmeRI	GACNNNNNGTC	1 cut(s)	694
BmeT110I	CYCGRG	2 cut(s)	810, 1670
BmgT120I	GGNCC	2 cut(s)	696, 1822
BmiI	GGNNCC	4 cut(s)	131, 396, 571, 1191
BmrFI	CCNGG	4 cut(s)	271, 1301, 1388, 1514
BmrI	ACTGGG	4 cut(s)	135, 663, 672, 1723
BmsI	GCATC	8 cut(s)	307, 357, 621, 1367, 1381, 1420, 1425, 1699
BmuI	ACTGGG	4 cut(s)	135, 663, 672, 1723
BoxI	GACNNNNGTC	1 cut(s)	1382
BpiI	GAAGAC	3 cut(s)	809, 1020, 1787
BplI	GAGNNNNNCTC	2 cut(s)	319, 351
BpmI	CTGGAG	1 cut(s)	2042
Bpu1102I	GCTNAGC	1 cut(s)	1995
Bpu14I	TTCGAA	1 cut(s)	2043
BpuEI	CTTGAG	1 cut(s)	1386
BsaAI	YACGTR	1 cut(s)	1061
BsaBI	GATNNNNATC	2 cut(s)	411, 453
BsaJI	CCNNGG	5 cut(s)	1095, 1185, 1299, 1512, 1755
BsaXI	ACNNNNNCTCC	4 cut(s)	531, 561, 1156, 1186
Bsc4I	CCNNNNNNNGG	8 cut(s)	327, 328, 566, 833, 1000, 1220, 1579, 1672
Bse21I	CCTNAGG	1 cut(s)	134
Bse8I	GATNNNNATC	2 cut(s)	411, 453
BseBI	CCWGG	4 cut(s)	271, 1301, 1388, 1514
BseDI	CCNNGG	5 cut(s)	1095, 1185, 1299, 1512, 1755
BseGI	GGATG	3 cut(s)	1181, 1396, 1690
BseJI	GATNNNNATC	2 cut(s)	411, 453
BseLI	CCNNNNNNNGG	8 cut(s)	327, 328, 566, 833, 1000, 1220, 1579, 1672
BseMII	CTCAG	4 cut(s)	148, 743, 1062, 1431
BseRI	GAGGAG	1 cut(s)	798
BseXI	GCAGC	4 cut(s)	201, 1128, 1358, 2018
BsgI	GTGCAG	2 cut(s)	168, 1135
Bsh1236I	CGCG	1 cut(s)	1081
Bsh1285I	CGRYCG	1 cut(s)	1095
BshFI	GGCC	4 cut(s)	44, 219, 1853, 2030
BshNI	GGYRCC	2 cut(s)	129, 569
BsiEI	CGRYCG	1 cut(s)	1095
BsiHKAI	GWGCWC	2 cut(s)	544, 1900
BsiHKCI	CYCGRG	2 cut(s)	810, 1670
BsiSI	CCGG	1 cut(s)	2031
BslFI	GGGAC	2 cut(s)	659, 1710
BslI	CCNNNNNNNGG	8 cut(s)	327, 328, 566, 833, 1000, 1220, 1579, 1672
BsmAI	GTCTC	2 cut(s)	326, 907
BsmFI	GGGAC	2 cut(s)	659, 1710
BsmI	GAATGC	1 cut(s)	1712
BsnI	GGCC	4 cut(s)	44, 219, 1853, 2030
BsoBI	CYCGRG	2 cut(s)	810, 1670
Bsp119I	TTCGAA	1 cut(s)	2043
Bsp1286I	GDGCHC	2 cut(s)	544, 1900
Bsp143I	GATC	8 cut(s)	118, 166, 412, 448, 531, 1459, 1615, 2017
Bsp1720I	GCTNAGC	1 cut(s)	1995
BspACI	CCGC	4 cut(s)	251, 978, 1087, 1640
BspANI	GGCC	4 cut(s)	44, 219, 1853, 2030
BspCNI	CTCAG	4 cut(s)	147, 742, 1061, 1432
BspFNI	CGCG	1 cut(s)	1081
BspHI	TCATGA	2 cut(s)	324, 1620
BspLI	GGNNCC	4 cut(s)	131, 396, 571, 1191
BspPI	GGATC	3 cut(s)	161, 539, 1454
BspT104I	TTCGAA	1 cut(s)	2043
BspT107I	GGYRCC	2 cut(s)	129, 569
BspTI	CTTAAG	1 cut(s)	389
BssECI	CCNNGG	5 cut(s)	1095, 1185, 1299, 1512, 1755
BssMI	GATC	8 cut(s)	118, 166, 412, 448, 531, 1459, 1615, 2017
BssSI	CACGAG	2 cut(s)	224, 371
BssT1I	CCWWGG	2 cut(s)	1185, 1755
Bst2BI	CACGAG	2 cut(s)	224, 371
Bst2UI	CCWGG	4 cut(s)	271, 1301, 1388, 1514
BstAFI	CTTAAG	1 cut(s)	389
BstAPI	GCANNNNNTGC	1 cut(s)	1751
BstBAI	YACGTR	1 cut(s)	1061
BstBI	TTCGAA	1 cut(s)	2043
BstC8I	GCNNGC	5 cut(s)	24, 106, 344, 1296, 1351
BstDEI	CTNAG	6 cut(s)	134, 214, 729, 1048, 1440, 1995
BstDSI	CCRYGG	1 cut(s)	1095
BstENI	CCTNNNNNAGG	3 cut(s)	1218, 1577, 1670
BstF5I	GGATG	3 cut(s)	1181, 1396, 1690
BstFNI	CGCG	1 cut(s)	1081
BstHHI	GCGC	1 cut(s)	1081
BstKTI	GATC	8 cut(s)	121, 169, 415, 451, 534, 1462, 1618, 2020
BstMAI	GTCTC	2 cut(s)	326, 907
BstMBI	GATC	8 cut(s)	118, 166, 412, 448, 531, 1459, 1615, 2017
BstMCI	CGRYCG	1 cut(s)	1095
BstMWI	GCNNNNNNNGC	4 cut(s)	195, 548, 1355, 1751
BstNI	CCWGG	4 cut(s)	271, 1301, 1388, 1514
BstNSI	RCATGY	3 cut(s)	1148, 1245, 1298
BstPAI	GACNNNNGTC	1 cut(s)	1382
BstSCI	CCNGG	4 cut(s)	269, 1299, 1386, 1512
BstSFI	CTRYAG	2 cut(s)	516, 1008
BstUI	CGCG	1 cut(s)	1081
BstV1I	GCAGC	4 cut(s)	201, 1128, 1358, 2018
BstV2I	GAAGAC	3 cut(s)	809, 1020, 1787
BstX2I	RGATCY	3 cut(s)	412, 531, 1459
BstXI	CCANNNNNNTGG	2 cut(s)	1065, 1307
BstYI	RGATCY	3 cut(s)	412, 531, 1459
Bsu36I	CCTNAGG	1 cut(s)	134
BsuI	GTATCC	2 cut(s)	766, 1001
BsuRI	GGCC	4 cut(s)	44, 219, 1853, 2030
BtgI	CCRYGG	1 cut(s)	1095
BtsCI	GGATG	3 cut(s)	1181, 1396, 1690
BtsIMutI	CAGTG	4 cut(s)	123, 676, 972, 1118
Cac8I	GCNNGC	5 cut(s)	24, 106, 344, 1296, 1351
CciI	TCATGA	2 cut(s)	324, 1620
CfoI	GCGC	1 cut(s)	1081
Cfr13I	GGNCC	2 cut(s)	696, 1822
CsiI	ACCWGGT	1 cut(s)	269
Csp6I	GTAC	4 cut(s)	570, 737, 955, 1560
CspCI	CAANNNNNGTGG	2 cut(s)	1141, 1176
CviQI	GTAC	4 cut(s)	570, 737, 955, 1560
DdeI	CTNAG	6 cut(s)	134, 214, 729, 1048, 1440, 1995
DpnI	GATC	8 cut(s)	120, 168, 414, 450, 533, 1461, 1617, 2019
DpnII	GATC	8 cut(s)	118, 166, 412, 448, 531, 1459, 1615, 2017
DraI	TTTAAA	1 cut(s)	714
DraIII	CACNNNGTG	1 cut(s)	129
DriI	GACNNNNNGTC	1 cut(s)	694
EaeI	YGGCCR	1 cut(s)	42
Eam1105I	GACNNNNNGTC	1 cut(s)	694
EciI	GGCGGA	2 cut(s)	993, 1655
Ecl136II	GAGCTC	1 cut(s)	1898
Eco130I	CCWWGG	2 cut(s)	1185, 1755
Eco147I	AGGCCT	2 cut(s)	219, 1853
Eco24I	GRGCYC	1 cut(s)	1900
Eco32I	GATATC	1 cut(s)	427
Eco47I	GGWCC	2 cut(s)	696, 1822
Eco53kI	GAGCTC	1 cut(s)	1898
Eco57I	CTGAAG	5 cut(s)	1094, 1326, 1452, 1612, 1868
Eco72I	CACGTG	1 cut(s)	1061
Eco81I	CCTNAGG	1 cut(s)	134
Eco88I	CYCGRG	2 cut(s)	810, 1670
EcoICRI	GAGCTC	1 cut(s)	1898
EcoNI	CCTNNNNNAGG	3 cut(s)	1218, 1577, 1670
EcoO109I	RGGNCCY	1 cut(s)	1822
EcoRI	GAATTC	1 cut(s)	1281
EcoRII	CCWGG	4 cut(s)	269, 1299, 1386, 1512
EcoRV	GATATC	1 cut(s)	427
EcoT14I	CCWWGG	2 cut(s)	1185, 1755
EcoT22I	ATGCAT	1 cut(s)	83
EcoT38I	GRGCYC	1 cut(s)	1900
ErhI	CCWWGG	2 cut(s)	1185, 1755
FalI	AAGNNNNNCTT	4 cut(s)	197, 229, 1212, 1244
FaqI	GGGAC	2 cut(s)	659, 1710
FauI	CCCGC	1 cut(s)	244
FauNDI	CATATG	3 cut(s)	1198, 1500, 1810
FblI	GTMKAC	1 cut(s)	589
Fnu4HI	GCNGC	4 cut(s)	190, 1117, 1347, 2007
FokI	GGATG	3 cut(s)	1168, 1403, 1677
FriOI	GRGCYC	1 cut(s)	1900
Fsp4HI	GCNGC	4 cut(s)	190, 1117, 1347, 2007
FspBI	CTAG	4 cut(s)	686, 746, 1215, 1946
GlaI	GCGC	1 cut(s)	1080
GluI	GCNGC	4 cut(s)	190, 1117, 1347, 2007
GsuI	CTGGAG	1 cut(s)	2042
HaeIII	GGCC	4 cut(s)	44, 219, 1853, 2030
HapII	CCGG	1 cut(s)	2031
HhaI	GCGC	1 cut(s)	1081
Hin6I	GCGC	1 cut(s)	1079
HinP1I	GCGC	1 cut(s)	1079
HincII	GTYRAC	1 cut(s)	590
HindII	GTYRAC	1 cut(s)	590
HindIII	AAGCTT	1 cut(s)	1997
HinfI	GANTC	9 cut(s)	334, 742, 805, 875, 884, 1083, 1316, 1508, 1976
HpaII	CCGG	1 cut(s)	2031
HphI	GGTGA	3 cut(s)	16, 905, 1599
Hpy166II	GTNNAC	5 cut(s)	34, 590, 683, 1142, 1734
Hpy8I	GTNNAC	5 cut(s)	34, 590, 683, 1142, 1734
Hpy99I	CGWCG	2 cut(s)	591, 1580
HpyAV	CCTTC	8 cut(s)	1034, 1347, 1473, 1474, 1620, 1843, 1864, 2020
HpyCH4IV	ACGT	3 cut(s)	722, 1060, 1410
HpyF10VI	GCNNNNNNNGC	4 cut(s)	195, 548, 1355, 1751
HpyF3I	CTNAG	6 cut(s)	134, 214, 729, 1048, 1440, 1995
HpySE526I	ACGT	3 cut(s)	722, 1060, 1410
HspAI	GCGC	1 cut(s)	1079
KpnI	GGTACC	1 cut(s)	573
Kzo9I	GATC	8 cut(s)	118, 166, 412, 448, 531, 1459, 1615, 2017
LmnI	GCTCC	2 cut(s)	539, 1933
Lsp1109I	GCAGC	4 cut(s)	201, 1128, 1358, 2018
LweI	GCATC	8 cut(s)	307, 357, 621, 1367, 1381, 1420, 1425, 1699
MabI	ACCWGGT	1 cut(s)	269
MaeI	CTAG	4 cut(s)	686, 746, 1215, 1946
MaeII	ACGT	3 cut(s)	722, 1060, 1410
MaeIII	GTNAC	7 cut(s)	4, 88, 257, 273, 1166, 1203, 1375
MalI	GATC	8 cut(s)	120, 168, 414, 450, 533, 1461, 1617, 2019
MboI	GATC	8 cut(s)	118, 166, 412, 448, 531, 1459, 1615, 2017
MboII	GAAGA	7 cut(s)	434, 814, 1025, 1332, 1458, 1792, 2057
MflI	RGATCY	3 cut(s)	412, 531, 1459
MhlI	GDGCHC	2 cut(s)	544, 1900
MlsI	TGGCCA	1 cut(s)	44
MluCI	AATT	8 cut(s)	243, 918, 925, 1281, 1485, 1536, 1583, 2077
MluNI	TGGCCA	1 cut(s)	44
MlyI	GAGTC	6 cut(s)	328, 799, 893, 1077, 1325, 1502
MmeI	TCCRAC	1 cut(s)	138
Mox20I	TGGCCA	1 cut(s)	44
Mph1103I	ATGCAT	1 cut(s)	83
MroXI	GAANNNNTTC	1 cut(s)	1853
MscI	TGGCCA	1 cut(s)	44
MseI	TTAA	8 cut(s)	381, 390, 611, 713, 797, 1101, 1794, 2083
MslI	CAYNNNNRTG	4 cut(s)	910, 1063, 1094, 1421
Msp20I	TGGCCA	1 cut(s)	44
MspA1I	CMGCKG	1 cut(s)	251
MspCI	CTTAAG	1 cut(s)	389
MspI	CCGG	1 cut(s)	2031
MspR9I	CCNGG	4 cut(s)	271, 1301, 1388, 1514
Mva1269I	GAATGC	1 cut(s)	1712
MvaI	CCWGG	4 cut(s)	271, 1301, 1388, 1514
MvnI	CGCG	1 cut(s)	1081
MwoI	GCNNNNNNNGC	4 cut(s)	195, 548, 1355, 1751
NdeI	CATATG	3 cut(s)	1198, 1500, 1810
NdeII	GATC	8 cut(s)	118, 166, 412, 448, 531, 1459, 1615, 2017
NlaIV	GGNNCC	4 cut(s)	131, 396, 571, 1191
NmuCI	GTSAC	5 cut(s)	4, 257, 273, 1166, 1375
NsiI	ATGCAT	1 cut(s)	83
NspI	RCATGY	3 cut(s)	1148, 1245, 1298
NspV	TTCGAA	1 cut(s)	2043
OliI	CACNNNNGTG	2 cut(s)	1063, 1094
PaeI	GCATGC	1 cut(s)	1298
PaeR7I	CTCGAG	2 cut(s)	810, 1670
PagI	TCATGA	2 cut(s)	324, 1620
PceI	AGGCCT	2 cut(s)	219, 1853
PciI	ACATGT	2 cut(s)	1144, 1241
PcsI	WCGNNNNNNNCGW	1 cut(s)	1416
PctI	GAATGC	1 cut(s)	1712
PdmI	GAANNNNTTC	1 cut(s)	1853
PfeI	GAWTC	3 cut(s)	742, 875, 1976
PflMI	CCANNNNNTGG	1 cut(s)	566
PfoI	TCCNGGA	1 cut(s)	1386
PkrI	GCNGC	4 cut(s)	191, 1118, 1348, 2008
PleI	GAGTC	6 cut(s)	328, 799, 892, 1077, 1324, 1502
PmaCI	CACGTG	1 cut(s)	1061
PmlI	CACGTG	1 cut(s)	1061
PpsI	GAGTC	6 cut(s)	328, 799, 892, 1077, 1324, 1502
Ppu21I	YACGTR	1 cut(s)	1061
PpuMI	RGGWCCY	1 cut(s)	1822
PscI	ACATGT	2 cut(s)	1144, 1241
PshAI	GACNNNNGTC	1 cut(s)	1382
PshBI	ATTAAT	1 cut(s)	611
Psp124BI	GAGCTC	1 cut(s)	1900
Psp5II	RGGWCCY	1 cut(s)	1822
Psp6I	CCWGG	4 cut(s)	269, 1299, 1386, 1512
PspCI	CACGTG	1 cut(s)	1061
PspGI	CCWGG	4 cut(s)	269, 1299, 1386, 1512
PspN4I	GGNNCC	4 cut(s)	131, 396, 571, 1191
PspPI	GGNCC	2 cut(s)	696, 1822
PspPPI	RGGWCCY	1 cut(s)	1822
PspXI	VCTCGAGB	2 cut(s)	810, 1670
PsuI	RGATCY	3 cut(s)	412, 531, 1459
RsaI	GTAC	4 cut(s)	571, 738, 956, 1561
RsaNI	GTAC	4 cut(s)	570, 737, 955, 1560
RseI	CAYNNNNRTG	4 cut(s)	910, 1063, 1094, 1421
SacI	GAGCTC	1 cut(s)	1900
SalI	GTCGAC	1 cut(s)	588
SaqAI	TTAA	8 cut(s)	381, 390, 611, 713, 797, 1101, 1794, 2083
SatI	GCNGC	4 cut(s)	190, 1117, 1347, 2007
Sau3AI	GATC	8 cut(s)	118, 166, 412, 448, 531, 1459, 1615, 2017
Sau96I	GGNCC	2 cut(s)	696, 1822
ScaI	AGTACT	2 cut(s)	956, 1561
SchI	GAGTC	6 cut(s)	328, 799, 893, 1077, 1325, 1502
ScrFI	CCNGG	4 cut(s)	271, 1301, 1388, 1514
SduI	GDGCHC	2 cut(s)	544, 1900
SexAI	ACCWGGT	1 cut(s)	269
SfaNI	GCATC	8 cut(s)	307, 357, 621, 1367, 1381, 1420, 1425, 1699
SfcI	CTRYAG	2 cut(s)	516, 1008
Sfr274I	CTCGAG	2 cut(s)	810, 1670
SfuI	TTCGAA	1 cut(s)	2043
SinI	GGWCC	2 cut(s)	696, 1822
SlaI	CTCGAG	2 cut(s)	810, 1670
SmiMI	CAYNNNNRTG	4 cut(s)	910, 1063, 1094, 1421
SmlI	CTYRAG	4 cut(s)	389, 810, 1401, 1670
SmoI	CTYRAG	4 cut(s)	389, 810, 1401, 1670
SphI	GCATGC	1 cut(s)	1298
Sse9I	AATT	8 cut(s)	243, 918, 925, 1281, 1485, 1536, 1583, 2077
SseBI	AGGCCT	2 cut(s)	219, 1853
SsiI	CCGC	4 cut(s)	251, 978, 1087, 1640
SspI	AATATT	1 cut(s)	1261
SspMI	CTAG	4 cut(s)	686, 746, 1215, 1946
SstI	GAGCTC	1 cut(s)	1900
StuI	AGGCCT	2 cut(s)	219, 1853
StyD4I	CCNGG	4 cut(s)	269, 1299, 1386, 1512
StyI	CCWWGG	2 cut(s)	1185, 1755
TaiI	ACGT	3 cut(s)	725, 1063, 1413
TaqI	TCGA	8 cut(s)	589, 811, 1251, 1419, 1575, 1601, 1671, 2043
TasI	AATT	8 cut(s)	243, 918, 925, 1281, 1485, 1536, 1583, 2077
TatI	WGTACW	2 cut(s)	954, 1559
TfiI	GAWTC	3 cut(s)	742, 875, 1976
Tru1I	TTAA	8 cut(s)	381, 390, 611, 713, 797, 1101, 1794, 2083
Tru9I	TTAA	8 cut(s)	381, 390, 611, 713, 797, 1101, 1794, 2083
TscAI	CASTG	4 cut(s)	130, 676, 979, 1118
TseFI	GTSAC	5 cut(s)	4, 257, 273, 1166, 1375
TseI	GCWGC	4 cut(s)	189, 1116, 1346, 2006
Tsp45I	GTSAC	5 cut(s)	4, 257, 273, 1166, 1375
TspDTI	ATGAA	5 cut(s)	476, 519, 815, 1637, 1674
TspGWI	ACGGA	1 cut(s)	1492
TspRI	CASTG	4 cut(s)	130, 676, 979, 1118
Van91I	CCANNNNNTGG	1 cut(s)	566
Vha464I	CTTAAG	1 cut(s)	389
VpaK11BI	GGWCC	2 cut(s)	696, 1822
VspI	ATTAAT	1 cut(s)	611
XagI	CCTNNNNNAGG	3 cut(s)	1218, 1577, 1670
XapI	RAATTY	3 cut(s)	243, 1281, 1583
XbaI	TCTAGA	1 cut(s)	745
XceI	RCATGY	3 cut(s)	1148, 1245, 1298
XhoI	CTCGAG	2 cut(s)	810, 1670
XmiI	GTMKAC	1 cut(s)	589
XmnI	GAANNNNTTC	1 cut(s)	1853
XspI	CTAG	4 cut(s)	686, 746, 1215, 1946
ZrmI	AGTACT	2 cut(s)	956, 1561
Zsp2I	ATGCAT	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.