Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0012562

Physical Location & Seq

Genomic Coordinates Reverse (-)

16471472 .. 16475238

Gene Structure 3767 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G155800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1653 bp

ATGGGGAAGAGAGGAGTGTTTTTGTTTTTGTTGTTGGCGTTGTGGCTGGCTATGTCTGCAGGGACTTGGGGCCAGGACGCCAAGGAGACGCTGAACTTGGCTGCTGGAACAGCCCAGCACAAAACGCACGAGACCTTCAAAGCTGCCAAGGAAAACACCAACTCGTGGGTTGATCGTACCTTCGGCAAAATCGCAGAGGGGTTAGGATTCGGCCAGGAAAATGCAAAAGAGAAGGCTAAGAATATGGGGGACAAAGCTGGGGATGCAGCCTCTGTGGCTACAGAAAGATTAAGAACGAGCACATTTGGATCTTCGGACACCGATTCTGTTCATGACAACTTTGATCCCTCTATAAGGATGCCCACTGATACAGTTGACAATGCCAAAGAGACCGTGACAAGGGCAATGGGTTCTGGAATGGATAGAGCAGCAAATGCCTACGATGAAGCAAAGAATACAATGAATAGGGCTACAGGCGCGGCTTCTGATAAGGCTTATGATGCAATGGAATATGGAAAAGACAGAACTGCTAATGCCTATGATGGAGCCAAGGAGGGAGTGAACATGGCATCCAATAAGGCCTACGACGCCAAAGAGACGGTGAGAGGGGCCATGGGTTCTGGAATGGACAGAGCAGCCAATGCTTATGATGGAGCAAAGAATGCAATGAATAGGGCTATGGGTTCGGCCTCTGATAAGGCTCATGACGCAATGGAATATGGAAAAGAAAGAAGTACCAATGCCTATGATGGAGCCAAGGAGGGAGTGAACATGGCCTCCGATAAGGCTTATGACGCAATGGAATATGGAAAAGAAAGAACTGCCAATACCTATGATGGAGCCAAGGAGGGAGTGAACATGGCCTCTGATAAGGCTTACGATGCCAAAGAGGCAGCCAGAGGGGCAATTGGTTCTGGAAAGGACAGAGCGGCGAATACCTATGATGAAGCGAAGAATACAATGAATAGGGCTACGGGTTCGGCTTCTGATAAGGCATATGATGCAATGGAATATGGAAAAGAAACAACTGCCAATGCCTATGATGGAGCCAAGGAGGGAGTGAACATGGCATCCAATAAGGCCTACGACGCCAAAGAGACGGTGAGAGGGGCCATGGGTTCTGGAATGGACAGAGCCGCCAATGCCTATGATGGAGCAAAGAATACAATGAATAGGGCTATGGGTTCCGCTTCTGATAACACTCATCACGCAATGGAATACGGAAAGGAAAGAACTGCCAATGCCTATGATGGAGCCAAGGAGAGAATGAACATGGCCTCAGATAAGGCCTACGATGCCAAAGAGGCAGCCAGAGGGGCAATTGGTTCGGCTTCTGATAAGGCTTCTGATGCAATGGAATATGGAAAAGAAAGAACTGCCAATGCCTATGATGGAGCCAAGGAGAGAATGAACATGGCCTCCAATAAGGCCTACGATGCCAAAAAAATGGTAGCGGGAGGAATTGATTCTGGGACGGAAAGAGCAGCCAATTCATACGATGAAGCAAAACAAAATGTTGGGGAGTCATACAAGTCAGCTAAGGACTGCATGACTGGACATGCCAAGCATAACTATGAGGCTGCAAAGGAGAGTGCCTCGCAGGCTGCAGGAGATCTCGGCGCTACCATGAGGAATGCTGGTTCAGAGATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03320 map03320

Pfam Domains

Protein Families

LEA_4

Protein Analysis

551

Amino Acids

58.31

Weight (kDa)

5.72

Isoelectric Point (pI)

19.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012562)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g13160
malus_domestica	MD02G1146200.v1.1 MD15G1260500.v1.1
prunus_persica	Prupe.7G155800_v2.0.a1 Prupe.7G155800_v2.0.a1 Prupe.I002400_v2.0.a1
pyrus_communis	pycom02g11580 pycom15g22770
rosa_chinensis	RchiOBHm_Chr2g0101381
rosa_laevigata	RLG00000017073
rosa_multiflora	Rmu_sc0006128.1_g000010
rosa_roxburghii	Rroxscaffold_2G00141350
rosa_rugosa	Rorug02G0098800 Rorug02G0098900
rosa_samantha	Rh2AG146400 Rh2BG151900 Rh2CG152400 Rh2DG152000
rosa_wichuraiana	Rw2G011410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	165
AccBSI	CCGCTC	1 cut(s)	929
AccII	CGCG	1 cut(s)	479
AciI	CCGC	5 cut(s)	479, 929, 1137, 1188, 1454
AclWI	GGATC	2 cut(s)	316, 338
AcoI	YGGCCR	1 cut(s)	211
AcyI	GRCGYC	3 cut(s)	78, 588, 1089
AfaI	GTAC	2 cut(s)	178, 736
AfiI	CCNNNNNNNGG	3 cut(s)	165, 354, 399
AgsI	TTSAA	1 cut(s)	139
AjnI	CCWGG	2 cut(s)	72, 213
AloI	GAACNNNNNNTCC	9 cut(s)	554, 586, 761, 793, 1055, 1087, 1403, 1435, 1624
AluBI	AGCT	3 cut(s)	143, 257, 1538
AluI	AGCT	3 cut(s)	143, 257, 1538
Alw21I	GWGCWC	1 cut(s)	302
Alw26I	GTCTC	5 cut(s)	80, 125, 383, 590, 1091
AlwI	GGATC	2 cut(s)	316, 338
AlwNI	CAGNNNCTG	1 cut(s)	272
Asp700I	GAANNNNTTC	1 cut(s)	1465
AspLEI	GCGC	2 cut(s)	479, 1622
AspS9I	GGNCC	3 cut(s)	70, 609, 1110
AsuHPI	GGTGA	2 cut(s)	613, 1114
BauI	CACGAG	2 cut(s)	128, 163
Bbv12I	GWGCWC	1 cut(s)	302
BccI	CCATC	8 cut(s)	536, 644, 743, 830, 1037, 1145, 1244, 1385
BcgI	CGANNNNNNTGC	2 cut(s)	1308, 1342
BciT130I	CCWGG	2 cut(s)	74, 215
BcoDI	GTCTC	5 cut(s)	80, 125, 383, 590, 1091
BfmI	CTRYAG	4 cut(s)	57, 279, 471, 1605
BfoI	RGCGCY	1 cut(s)	1623
BglI	GCCNNNNNGGC	6 cut(s)	275, 890, 902, 1304, 1316, 1601
BglII	AGATCT	1 cut(s)	1612
Bme1390I	CCNGG	2 cut(s)	74, 215
BmgT120I	GGNCC	3 cut(s)	70, 609, 1110
BmrFI	CCNGG	2 cut(s)	74, 215
BplI	GAGNNNNNCTC	2 cut(s)	1580, 1612
Bpu10I	CCTNAGC	1 cut(s)	1539
BsaHI	GRCGYC	3 cut(s)	78, 588, 1089
BsaI	GGTCTC	2 cut(s)	125, 383
BsaXI	ACNNNNNCTCC	4 cut(s)	761, 791, 1403, 1433
Bsc4I	CCNNNNNNNGG	3 cut(s)	165, 354, 399
Bse1I	ACTGG	1 cut(s)	1558
Bse3DI	GCAATG	8 cut(s)	411, 510, 672, 717, 804, 1011, 1218, 1359
BseBI	CCWGG	2 cut(s)	74, 215
BseGI	GGATG	4 cut(s)	268, 363, 569, 1070
BseLI	CCNNNNNNNGG	3 cut(s)	165, 354, 399
BseMI	GCAATG	8 cut(s)	411, 510, 672, 717, 804, 1011, 1218, 1359
BseMII	CTCAG	1 cut(s)	1293
BseNI	ACTGG	1 cut(s)	1558
BseRI	GAGGAG	1 cut(s)	27
BseYI	CCCAGC	2 cut(s)	114, 257
Bsh1236I	CGCG	1 cut(s)	479
BsiHKAI	GWGCWC	1 cut(s)	302
BslFI	GGGAC	3 cut(s)	76, 263, 1486
BslI	CCNNNNNNNGG	3 cut(s)	165, 354, 399
BsmAI	GTCTC	5 cut(s)	80, 125, 383, 590, 1091
BsmBI	CGTCTC	3 cut(s)	80, 590, 1091
BsmFI	GGGAC	3 cut(s)	76, 263, 1486
BsmI	GAATGC	2 cut(s)	667, 1639
Bso31I	GGTCTC	2 cut(s)	125, 383
Bsp1286I	GDGCHC	1 cut(s)	302
Bsp143I	GATC	4 cut(s)	172, 308, 343, 1612
Bsp19I	CCATGG	2 cut(s)	612, 1113
BspACI	CCGC	5 cut(s)	479, 929, 1137, 1188, 1454
BspCNI	CTCAG	1 cut(s)	1292
BspFNI	CGCG	1 cut(s)	479
BspHI	TCATGA	2 cut(s)	331, 703
BspMAI	CTGCAG	2 cut(s)	61, 1609
BspPI	GGATC	2 cut(s)	316, 338
BspTNI	GGTCTC	2 cut(s)	125, 383
BsrBI	CCGCTC	1 cut(s)	929
BsrDI	GCAATG	8 cut(s)	411, 510, 672, 717, 804, 1011, 1218, 1359
BsrI	ACTGG	1 cut(s)	1558
BssMI	GATC	4 cut(s)	172, 308, 343, 1612
BssNI	GRCGYC	3 cut(s)	78, 588, 1089
BssSI	CACGAG	2 cut(s)	128, 163
Bst2BI	CACGAG	2 cut(s)	128, 163
Bst2UI	CCWGG	2 cut(s)	74, 215
Bst4CI	ACNGT	4 cut(s)	373, 394, 601, 1102
Bst6I	CTCTTC	1 cut(s)	2
BstACI	GRCGYC	3 cut(s)	78, 588, 1089
BstAPI	GCANNNNNTGC	4 cut(s)	434, 641, 662, 1001
BstC8I	GCNNGC	2 cut(s)	48, 1602
BstDEI	CTNAG	3 cut(s)	237, 1279, 1539
BstDSI	CCRYGG	2 cut(s)	612, 1113
BstENI	CCTNNNNNAGG	1 cut(s)	352
BstF5I	GGATG	4 cut(s)	268, 363, 569, 1070
BstFNI	CGCG	1 cut(s)	479
BstH2I	RGCGCY	1 cut(s)	1623
BstHHI	GCGC	2 cut(s)	479, 1622
BstKTI	GATC	4 cut(s)	175, 311, 346, 1615
BstMAI	GTCTC	5 cut(s)	80, 125, 383, 590, 1091
BstMBI	GATC	4 cut(s)	172, 308, 343, 1612
BstNI	CCWGG	2 cut(s)	74, 215
BstNSI	RCATGY	1 cut(s)	1562
BstSCI	CCNGG	2 cut(s)	72, 213
BstSFI	CTRYAG	4 cut(s)	57, 279, 471, 1605
BstUI	CGCG	1 cut(s)	479
BstX2I	RGATCY	2 cut(s)	308, 1612
BstXI	CCANNNNNNTGG	1 cut(s)	1447
BstYI	RGATCY	2 cut(s)	308, 1612
BtgI	CCRYGG	2 cut(s)	612, 1113
BtsCI	GGATG	4 cut(s)	268, 363, 569, 1070
BtsIMutI	CAGTG	1 cut(s)	363
Cac8I	GCNNGC	2 cut(s)	48, 1602
CaiI	CAGNNNCTG	1 cut(s)	272
CciI	TCATGA	2 cut(s)	331, 703
CfoI	GCGC	2 cut(s)	479, 1622
Cfr13I	GGNCC	3 cut(s)	70, 609, 1110
CseI	GACGC	6 cut(s)	86, 97, 596, 716, 803, 1097
Csp6I	GTAC	2 cut(s)	177, 735
CviQI	GTAC	2 cut(s)	177, 735
DdeI	CTNAG	3 cut(s)	237, 1279, 1539
DpnI	GATC	4 cut(s)	174, 310, 345, 1614
DpnII	GATC	4 cut(s)	172, 308, 343, 1612
EaeI	YGGCCR	1 cut(s)	211
Eam1104I	CTCTTC	1 cut(s)	2
EarI	CTCTTC	1 cut(s)	2
Eco147I	AGGCCT	4 cut(s)	581, 1082, 1289, 1430
Eco31I	GGTCTC	2 cut(s)	125, 383
EcoNI	CCTNNNNNAGG	1 cut(s)	352
EcoRII	CCWGG	2 cut(s)	72, 213
Esp3I	CGTCTC	3 cut(s)	80, 590, 1091
FaqI	GGGAC	3 cut(s)	76, 263, 1486
FauI	CCCGC	1 cut(s)	1447
FauNDI	CATATG	1 cut(s)	997
FokI	GGATG	4 cut(s)	275, 370, 556, 1057
GlaI	GCGC	2 cut(s)	478, 1621
GsaI	CCCAGC	2 cut(s)	118, 261
HaeII	RGCGCY	1 cut(s)	1623
HgaI	GACGC	6 cut(s)	86, 97, 596, 716, 803, 1097
HhaI	GCGC	2 cut(s)	479, 1622
Hin1I	GRCGYC	3 cut(s)	78, 588, 1089
Hin6I	GCGC	2 cut(s)	477, 1620
HinP1I	GCGC	2 cut(s)	477, 1620
HincII	GTYRAC	1 cut(s)	376
HindII	GTYRAC	1 cut(s)	376
HinfI	GANTC	4 cut(s)	207, 323, 1466, 1523
HphI	GGTGA	2 cut(s)	613, 1114
Hpy166II	GTNNAC	5 cut(s)	376, 562, 769, 856, 1063
Hpy188III	TCNNGA	6 cut(s)	332, 414, 621, 704, 915, 1122
Hpy8I	GTNNAC	5 cut(s)	376, 562, 769, 856, 1063
Hpy99I	CGWCG	2 cut(s)	590, 1091
HpyAV	CCTTC	3 cut(s)	145, 190, 226
HpyCH4III	ACNGT	4 cut(s)	373, 394, 601, 1102
HpyF3I	CTNAG	3 cut(s)	237, 1279, 1539
Hsp92I	GRCGYC	3 cut(s)	78, 588, 1089
HspAI	GCGC	2 cut(s)	477, 1620
Kzo9I	GATC	4 cut(s)	172, 308, 343, 1612
LmnI	GCTCC	8 cut(s)	545, 653, 752, 839, 1046, 1154, 1253, 1394
MaeIII	GTNAC	1 cut(s)	394
MalI	GATC	4 cut(s)	174, 310, 345, 1614
MbiI	CCGCTC	1 cut(s)	929
MboI	GATC	4 cut(s)	172, 308, 343, 1612
MboII	GAAGA	3 cut(s)	19, 303, 964
MfeI	CAATTG	2 cut(s)	906, 1320
MflI	RGATCY	2 cut(s)	308, 1612
MhlI	GDGCHC	1 cut(s)	302
MluCI	AATT	4 cut(s)	906, 1320, 1461, 1489
MlyI	GAGTC	1 cut(s)	1532
MroXI	GAANNNNTTC	1 cut(s)	1465
MseI	TTAA	1 cut(s)	290
MslI	CAYNNNNRTG	1 cut(s)	1572
MspR9I	CCNGG	2 cut(s)	74, 215
MunI	CAATTG	2 cut(s)	906, 1320
Mva1269I	GAATGC	2 cut(s)	667, 1639
MvaI	CCWGG	2 cut(s)	74, 215
MvnI	CGCG	1 cut(s)	479
NcoI	CCATGG	2 cut(s)	612, 1113
NdeI	CATATG	1 cut(s)	997
NdeII	GATC	4 cut(s)	172, 308, 343, 1612
NmeAIII	GCCGAG	1 cut(s)	1596
NmuCI	GTSAC	1 cut(s)	394
NspI	RCATGY	1 cut(s)	1562
PagI	TCATGA	2 cut(s)	331, 703
PceI	AGGCCT	4 cut(s)	581, 1082, 1289, 1430
PctI	GAATGC	2 cut(s)	667, 1639
PdmI	GAANNNNTTC	1 cut(s)	1465
PfeI	GAWTC	3 cut(s)	207, 323, 1466
PflMI	CCANNNNNTGG	1 cut(s)	165
PleI	GAGTC	1 cut(s)	1531
PpsI	GAGTC	1 cut(s)	1531
Psp6I	CCWGG	2 cut(s)	72, 213
PspFI	CCCAGC	2 cut(s)	114, 257
PspGI	CCWGG	2 cut(s)	72, 213
PspPI	GGNCC	3 cut(s)	70, 609, 1110
PsrI	GAACNNNNNNTAC	2 cut(s)	811, 843
PstI	CTGCAG	2 cut(s)	61, 1609
PstNI	CAGNNNCTG	1 cut(s)	272
PsuI	RGATCY	2 cut(s)	308, 1612
RsaI	GTAC	2 cut(s)	178, 736
RsaNI	GTAC	2 cut(s)	177, 735
RseI	CAYNNNNRTG	1 cut(s)	1572
SaqAI	TTAA	1 cut(s)	290
Sau3AI	GATC	4 cut(s)	172, 308, 343, 1612
Sau96I	GGNCC	3 cut(s)	70, 609, 1110
SchI	GAGTC	1 cut(s)	1532
ScrFI	CCNGG	2 cut(s)	74, 215
SduI	GDGCHC	1 cut(s)	302
SetI	ASST	7 cut(s)	137, 145, 182, 259, 833, 941, 1540
SfcI	CTRYAG	4 cut(s)	57, 279, 471, 1605
SmiMI	CAYNNNNRTG	1 cut(s)	1572
Sse9I	AATT	4 cut(s)	906, 1320, 1461, 1489
SseBI	AGGCCT	4 cut(s)	581, 1082, 1289, 1430
SsiI	CCGC	5 cut(s)	479, 929, 1137, 1188, 1454
StuI	AGGCCT	4 cut(s)	581, 1082, 1289, 1430
StyD4I	CCNGG	2 cut(s)	72, 213
TaaI	ACNGT	4 cut(s)	373, 394, 601, 1102
TasI	AATT	4 cut(s)	906, 1320, 1461, 1489
TauI	GCSGC	3 cut(s)	482, 932, 1139
TfiI	GAWTC	3 cut(s)	207, 323, 1466
Tru1I	TTAA	1 cut(s)	290
Tru9I	TTAA	1 cut(s)	290
TscAI	CASTG	1 cut(s)	370
TseFI	GTSAC	1 cut(s)	394
Tsp45I	GTSAC	1 cut(s)	394
TspGWI	ACGGA	2 cut(s)	1236, 1490
TspRI	CASTG	1 cut(s)	370
Van91I	CCANNNNNTGG	1 cut(s)	165
XagI	CCTNNNNNAGG	1 cut(s)	352
XceI	RCATGY	1 cut(s)	1562
XmnI	GAANNNNTTC	1 cut(s)	1465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.