Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0012562

Physical Location & Seq

Genomic Coordinates Reverse (-)

79659794 .. 79662600

Gene Structure 2807 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00141350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1278 bp

ATGGGGAAGAGCACAACTTTGTTGCTGCTTGTGTTCTGGCTGGCTACGACGTCGGTTTGGGGCGAGCAGGCTGCTCAGGATGCAAAGGGAAACAGTGGATCATGGACTGAGTGGATTATGAATAAGCTATCACCGGGGCTTGGACTCGAGCAGGAGAGAGCAGCTAAGAATGTGGTGGACAAATCTGGGGATGCAGCCTCTAAGGCCAGGGAAAAAGTGGACTCTTTTGGATCAAGATTGAAGTCCCATGTGCATGACGCAGCCAACAATGCCCATGACAATTGGGATCAGTCAATAAGAATGCCTACTGAGAGAGCTGACAATGCTGCCCAAGAGACAATGGCAGAAGCAGTTGAAGCCGGAAAACATCAAGTAGCCAATACCTACAATGATGGTAAAGAGAAACTTAACACTGCGAAAGACATTGCTTCTGATAAAGCTTATGATGCTATGGAGGCAACGGCAAATATGTATGGGGAGGCTAAGCAGAAAATGAATTCAGCTTCGCATGTGGCATCAAATAAAGCTGATGATGCCAAAGAGGCAACGTCGAATATGTATGGGGATGTTAGGCAGAAAACGAACTCAGCTTCAAATGTGGCTTCAGATAAAGCTTCTGGTGCCAAGGAGACAGCAGATAATATGTATGGGGAAGCTAAGCAGGGAATGAATTGGGCTACAAATATGGCTTCAGATAAAGCATATGATGCCAAGGAGGGAGCGGCCAATATGTATGGGGAAGCCAAGCAGAAAATGAGTTCAGCCTCAAATAAAGCTTCAGATAAAGCTTATGATACCAAAGAGACAACTGCTAATATGTATGGGGAAGCTAAGCAAAGAATTAATCATGCTTCAAATGTTGCATCAGATAGGGTTAATGATGCCAAAGAGACAGTGAAAGGGGCCATGGGTTGTGGAATGGACAAAGCAGCAGGTGCATATGGTGATGCAAAGAATACAATGAAAACGACTACGAGTACTGTGTCTGACAAGGCCAATGATGCAATGGAATATGGGAGAGAGAGAGCCGCAGATGCATATGATGGAGCAAAGGAGAAAATGAACTTCGCCTCTGATAAGGCAGACAGGGTAGCAGGAGGAATCGAGCATGGAAGAGAAAAGGCAGCCAATTCCTATGATGAGGCAAAACAAAGCGTGGGTGAGACATACAGAGAAGCGAAGGATACTATATCCGAGCATACCAGGCATAACTATGTGGCTGCCAAGGAGAGGGCATCGCAGGCAACAGGTGATCTTGGGACTAAGATGAGAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03320 map03320

Pfam Domains

Protein Families

LEA_4

Protein Analysis

425

Amino Acids

45.71

Weight (kDa)

6.06

Isoelectric Point (pI)

21.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012562)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g13160
malus_domestica	MD02G1146200.v1.1 MD15G1260500.v1.1
prunus_persica	Prupe.7G155800_v2.0.a1 Prupe.7G155800_v2.0.a1 Prupe.I002400_v2.0.a1
pyrus_communis	pycom02g11580 pycom15g22770
rosa_chinensis	RchiOBHm_Chr2g0101381
rosa_laevigata	RLG00000017073
rosa_multiflora	Rmu_sc0006128.1_g000010
rosa_roxburghii	Rroxscaffold_2G00141350
rosa_rugosa	Rorug02G0098800 Rorug02G0098900
rosa_samantha	Rh2AG146400 Rh2BG151900 Rh2CG152400 Rh2DG152000
rosa_wichuraiana	Rw2G011410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	923
AatII	GACGTC	1 cut(s)	53
Acc36I	ACCTGC	1 cut(s)	923
AccB1I	GGYRCC	1 cut(s)	620
AccBSI	CCGCTC	1 cut(s)	722
AciI	CCGC	2 cut(s)	722, 1029
AclWI	GGATC	3 cut(s)	106, 238, 294
AcoI	YGGCCR	1 cut(s)	723
AcsI	RAATTY	1 cut(s)	496
AcuI	CTGAAG	3 cut(s)	588, 675, 762
AcyI	GRCGYC	1 cut(s)	50
AfaI	GTAC	1 cut(s)	979
AfiI	CCNNNNNNNGG	2 cut(s)	140, 1230
AgsI	TTSAA	4 cut(s)	241, 356, 594, 855
AjnI	CCWGG	2 cut(s)	206, 1202
Alw21I	GWGCWC	1 cut(s)	14
Alw26I	GTCTC	5 cut(s)	329, 623, 797, 884, 1157
AlwI	GGATC	3 cut(s)	106, 238, 294
Ama87I	CYCGRG	1 cut(s)	146
AoxI	GGCC	4 cut(s)	204, 723, 903, 993
ApeKI	GCWGC	9 cut(s)	25, 71, 161, 194, 260, 326, 929, 1124, 1220
ApoI	RAATTY	1 cut(s)	496
AseI	ATTAAT	1 cut(s)	843
AspS9I	GGNCC	1 cut(s)	903
AsuC2I	CCSGG	1 cut(s)	135
AsuHPI	GGTGA	4 cut(s)	123, 956, 1172, 1262
AvaI	CYCGRG	1 cut(s)	146
BanI	GGYRCC	1 cut(s)	620
Bbv12I	GWGCWC	1 cut(s)	14
BbvI	GCAGC	9 cut(s)	12, 58, 173, 206, 272, 313, 941, 1136, 1207
BccI	CCATC	2 cut(s)	386, 1037
BceAI	ACGGC	1 cut(s)	477
BcgI	CGANNNNNNTGC	2 cut(s)	53, 87
BciT130I	CCWGG	2 cut(s)	208, 1204
BciVI	GTATCC	1 cut(s)	1177
BcnI	CCSGG	1 cut(s)	135
BcoDI	GTCTC	5 cut(s)	329, 623, 797, 884, 1157
BfuAI	ACCTGC	1 cut(s)	923
BfuI	GTATCC	1 cut(s)	1177
BglI	GCCNNNNNGGC	2 cut(s)	203, 542
BlpI	GCTNAGC	3 cut(s)	483, 657, 831
BmcAI	AGTACT	1 cut(s)	979
Bme1390I	CCNGG	3 cut(s)	135, 208, 1204
BmeT110I	CYCGRG	1 cut(s)	146
BmgT120I	GGNCC	1 cut(s)	903
BmiI	GGNNCC	2 cut(s)	622, 904
BmrFI	CCNGG	3 cut(s)	135, 208, 1204
Bpu10I	CCTNAGC	1 cut(s)	75
Bpu1102I	GCTNAGC	3 cut(s)	483, 657, 831
BpuMI	CCSGG	1 cut(s)	135
BsaHI	GRCGYC	1 cut(s)	50
BsaJI	CCNNGG	6 cut(s)	134, 207, 624, 711, 906, 1224
Bsc4I	CCNNNNNNNGG	2 cut(s)	140, 1230
Bse3DI	GCAATG	2 cut(s)	423, 1011
BseBI	CCWGG	2 cut(s)	208, 1204
BseDI	CCNNGG	6 cut(s)	134, 207, 624, 711, 906, 1224
BseGI	GGATG	3 cut(s)	85, 196, 571
BseLI	CCNNNNNNNGG	2 cut(s)	140, 1230
BseMI	GCAATG	2 cut(s)	423, 1011
BseMII	CTCAG	4 cut(s)	89, 99, 300, 600
BseXI	GCAGC	9 cut(s)	12, 58, 173, 206, 272, 313, 941, 1136, 1207
BshFI	GGCC	4 cut(s)	206, 725, 905, 995
BshNI	GGYRCC	1 cut(s)	620
BsiHKAI	GWGCWC	1 cut(s)	14
BsiHKCI	CYCGRG	1 cut(s)	146
BsiSI	CCGG	2 cut(s)	134, 360
BslFI	GGGAC	2 cut(s)	229, 1273
BslI	CCNNNNNNNGG	2 cut(s)	140, 1230
BsmAI	GTCTC	5 cut(s)	329, 623, 797, 884, 1157
BsmFI	GGGAC	2 cut(s)	229, 1273
BsmI	GAATGC	1 cut(s)	306
BsnI	GGCC	4 cut(s)	206, 725, 905, 995
BsoBI	CYCGRG	1 cut(s)	146
Bsp1286I	GDGCHC	1 cut(s)	14
Bsp143I	GATC	4 cut(s)	98, 230, 286, 1252
Bsp1720I	GCTNAGC	3 cut(s)	483, 657, 831
Bsp19I	CCATGG	1 cut(s)	906
BspACI	CCGC	2 cut(s)	722, 1029
BspANI	GGCC	4 cut(s)	206, 725, 905, 995
BspCNI	CTCAG	4 cut(s)	88, 100, 301, 599
BspLI	GGNNCC	2 cut(s)	622, 904
BspMI	ACCTGC	1 cut(s)	923
BspPI	GGATC	3 cut(s)	106, 238, 294
BspQI	GCTCTTC	1 cut(s)	2
BspT107I	GGYRCC	1 cut(s)	620
BsrBI	CCGCTC	1 cut(s)	722
BsrDI	GCAATG	2 cut(s)	423, 1011
BssECI	CCNNGG	6 cut(s)	134, 207, 624, 711, 906, 1224
BssMI	GATC	4 cut(s)	98, 230, 286, 1252
BssNI	GRCGYC	1 cut(s)	50
BssT1I	CCWWGG	4 cut(s)	624, 711, 906, 1224
Bst2UI	CCWGG	2 cut(s)	208, 1204
Bst4CI	ACNGT	3 cut(s)	95, 895, 982
Bst6I	CTCTTC	2 cut(s)	2, 1108
BstACI	GRCGYC	1 cut(s)	50
BstAPI	GCANNNNNTGC	2 cut(s)	707, 935
BstC8I	GCNNGC	4 cut(s)	42, 65, 69, 1242
BstDSI	CCRYGG	1 cut(s)	906
BstF5I	GGATG	3 cut(s)	85, 196, 571
BstKTI	GATC	4 cut(s)	101, 233, 289, 1255
BstMAI	GTCTC	5 cut(s)	329, 623, 797, 884, 1157
BstMBI	GATC	4 cut(s)	98, 230, 286, 1252
BstNI	CCWGG	2 cut(s)	208, 1204
BstNSI	RCATGY	1 cut(s)	512
BstSCI	CCNGG	3 cut(s)	133, 206, 1202
BstV1I	GCAGC	9 cut(s)	12, 58, 173, 206, 272, 313, 941, 1136, 1207
BsuI	GTATCC	1 cut(s)	1177
BsuRI	GGCC	4 cut(s)	206, 725, 905, 995
BtgI	CCRYGG	1 cut(s)	906
BtgZI	GCGATG	1 cut(s)	1221
BtsCI	GGATG	3 cut(s)	85, 196, 571
BtsI	GCAGTG	1 cut(s)	411
BtsIMutI	CAGTG	3 cut(s)	100, 411, 900
BveI	ACCTGC	1 cut(s)	923
Cac8I	GCNNGC	4 cut(s)	42, 65, 69, 1242
Cfr13I	GGNCC	1 cut(s)	903
CseI	GACGC	1 cut(s)	266
Csp6I	GTAC	1 cut(s)	978
CviAII	CATG	8 cut(s)	102, 248, 254, 275, 509, 848, 907, 1109
CviQI	GTAC	1 cut(s)	978
DpnI	GATC	4 cut(s)	100, 232, 288, 1254
DpnII	GATC	4 cut(s)	98, 230, 286, 1252
EaeI	YGGCCR	1 cut(s)	723
Eam1104I	CTCTTC	2 cut(s)	2, 1108
EarI	CTCTTC	2 cut(s)	2, 1108
Eco130I	CCWWGG	4 cut(s)	624, 711, 906, 1224
Eco57I	CTGAAG	3 cut(s)	588, 675, 762
Eco88I	CYCGRG	1 cut(s)	146
EcoRI	GAATTC	1 cut(s)	496
EcoRII	CCWGG	2 cut(s)	206, 1202
EcoT14I	CCWWGG	4 cut(s)	624, 711, 906, 1224
EcoT22I	ATGCAT	1 cut(s)	1039
ErhI	CCWWGG	4 cut(s)	624, 711, 906, 1224
FaeI	CATG	8 cut(s)	105, 251, 257, 278, 512, 851, 910, 1112
FalI	AAGNNNNNCTT	2 cut(s)	390, 422
FaqI	GGGAC	2 cut(s)	229, 1273
FatI	CATG	8 cut(s)	101, 247, 253, 274, 508, 847, 906, 1108
FauNDI	CATATG	3 cut(s)	703, 940, 1039
FokI	GGATG	3 cut(s)	92, 203, 578
HaeIII	GGCC	4 cut(s)	206, 725, 905, 995
HapII	CCGG	2 cut(s)	134, 360
HgaI	GACGC	1 cut(s)	266
Hin1I	GRCGYC	1 cut(s)	50
Hin1II	CATG	8 cut(s)	105, 251, 257, 278, 512, 851, 910, 1112
HindIII	AAGCTT	4 cut(s)	438, 612, 774, 786
HinfI	GANTC	3 cut(s)	144, 221, 1101
HpaII	CCGG	2 cut(s)	134, 360
HphI	GGTGA	4 cut(s)	123, 956, 1172, 1262
Hpy166II	GTNNAC	2 cut(s)	178, 220
Hpy188I	TCNGA	8 cut(s)	433, 607, 694, 781, 868, 988, 1075, 1195
Hpy188III	TCNNGA	2 cut(s)	77, 234
Hpy8I	GTNNAC	2 cut(s)	178, 220
Hpy99I	CGWCG	3 cut(s)	52, 55, 553
HpyAV	CCTTC	1 cut(s)	1174
HpyCH4III	ACNGT	3 cut(s)	95, 895, 982
HpyCH4IV	ACGT	2 cut(s)	50, 548
HpyCH4V	TGCA	8 cut(s)	83, 194, 253, 863, 938, 950, 1004, 1037
HpySE526I	ACGT	2 cut(s)	50, 548
Hsp92I	GRCGYC	1 cut(s)	50
Hsp92II	CATG	8 cut(s)	105, 251, 257, 278, 512, 851, 910, 1112
Kzo9I	GATC	4 cut(s)	98, 230, 286, 1252
LguI	GCTCTTC	1 cut(s)	2
LmnI	GCTCC	2 cut(s)	719, 1046
Lsp1109I	GCAGC	9 cut(s)	12, 58, 173, 206, 272, 313, 941, 1136, 1207
MaeII	ACGT	2 cut(s)	50, 548
MalI	GATC	4 cut(s)	100, 232, 288, 1254
MbiI	CCGCTC	1 cut(s)	722
MboI	GATC	4 cut(s)	98, 230, 286, 1252
MboII	GAAGA	2 cut(s)	19, 1125
MfeI	CAATTG	1 cut(s)	280
MhlI	GDGCHC	1 cut(s)	14
MluCI	AATT	6 cut(s)	280, 496, 670, 840, 1129, 1273
MlyI	GAGTC	2 cut(s)	138, 215
Mph1103I	ATGCAT	1 cut(s)	1039
MseI	TTAA	3 cut(s)	408, 843, 876
MslI	CAYNNNNRTG	2 cut(s)	252, 1212
MspI	CCGG	2 cut(s)	134, 360
MspR9I	CCNGG	3 cut(s)	135, 208, 1204
MunI	CAATTG	1 cut(s)	280
Mva1269I	GAATGC	1 cut(s)	306
MvaI	CCWGG	2 cut(s)	208, 1204
NciI	CCSGG	1 cut(s)	135
NcoI	CCATGG	1 cut(s)	906
NdeI	CATATG	3 cut(s)	703, 940, 1039
NdeII	GATC	4 cut(s)	98, 230, 286, 1252
NlaIII	CATG	8 cut(s)	105, 251, 257, 278, 512, 851, 910, 1112
NlaIV	GGNNCC	2 cut(s)	622, 904
NsiI	ATGCAT	1 cut(s)	1039
NspI	RCATGY	1 cut(s)	512
PaeR7I	CTCGAG	1 cut(s)	146
PaqCI	CACCTGC	1 cut(s)	923
PciSI	GCTCTTC	1 cut(s)	2
PctI	GAATGC	1 cut(s)	306
PfeI	GAWTC	1 cut(s)	1101
PleI	GAGTC	2 cut(s)	138, 215
PpsI	GAGTC	2 cut(s)	138, 215
PshBI	ATTAAT	1 cut(s)	843
Psp6I	CCWGG	2 cut(s)	206, 1202
PspGI	CCWGG	2 cut(s)	206, 1202
PspN4I	GGNNCC	2 cut(s)	622, 904
PspPI	GGNCC	1 cut(s)	903
PspXI	VCTCGAGB	1 cut(s)	146
RsaI	GTAC	1 cut(s)	979
RsaNI	GTAC	1 cut(s)	978
RseI	CAYNNNNRTG	2 cut(s)	252, 1212
SapI	GCTCTTC	1 cut(s)	2
SaqAI	TTAA	3 cut(s)	408, 843, 876
Sau3AI	GATC	4 cut(s)	98, 230, 286, 1252
Sau96I	GGNCC	1 cut(s)	903
ScaI	AGTACT	1 cut(s)	979
SchI	GAGTC	2 cut(s)	138, 215
ScrFI	CCNGG	3 cut(s)	135, 208, 1204
SduI	GDGCHC	1 cut(s)	14
Sfr274I	CTCGAG	1 cut(s)	146
SlaI	CTCGAG	1 cut(s)	146
SmiMI	CAYNNNNRTG	2 cut(s)	252, 1212
SmlI	CTYRAG	1 cut(s)	146
SmoI	CTYRAG	1 cut(s)	146
Sse9I	AATT	6 cut(s)	280, 496, 670, 840, 1129, 1273
SsiI	CCGC	2 cut(s)	722, 1029
StyD4I	CCNGG	3 cut(s)	133, 206, 1202
StyI	CCWWGG	4 cut(s)	624, 711, 906, 1224
TaaI	ACNGT	3 cut(s)	95, 895, 982
TaiI	ACGT	2 cut(s)	53, 551
TaqI	TCGA	3 cut(s)	147, 551, 1104
TasI	AATT	6 cut(s)	280, 496, 670, 840, 1129, 1273
TatI	WGTACW	1 cut(s)	977
TauI	GCSGC	2 cut(s)	725, 1031
TfiI	GAWTC	1 cut(s)	1101
Tru1I	TTAA	3 cut(s)	408, 843, 876
Tru9I	TTAA	3 cut(s)	408, 843, 876
TscAI	CASTG	3 cut(s)	100, 418, 900
TseI	GCWGC	9 cut(s)	25, 71, 161, 194, 260, 326, 929, 1124, 1220
TspDTI	ATGAA	5 cut(s)	134, 509, 683, 977, 1076
TspRI	CASTG	3 cut(s)	100, 418, 900
VspI	ATTAAT	1 cut(s)	843
XapI	RAATTY	1 cut(s)	496
XceI	RCATGY	1 cut(s)	512
XcmI	CCANNNNNNNNNTGG	2 cut(s)	214, 1003
XhoI	CTCGAG	1 cut(s)	146
ZraI	GACGTC	1 cut(s)	51
ZrmI	AGTACT	1 cut(s)	979
Zsp2I	ATGCAT	1 cut(s)	1039

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.