Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0012562

Physical Location & Seq

Genomic Coordinates Forward (+)

16844237 .. 16850058

Gene Structure 5822 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g22770.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1533 bp

ATGGGGAAGAAGACAGTGTTTTTAATGGCGGCGGTGCTGTGGATGAGTATGGCGGCTGGAAGTTGGAGTGCGGATTCTGCTGTGGATAAAGCCGGGGACAATTTGAACTTGGCAGGTGGGAATGCCAAACACCAAGCTCACGAGACCGCCCGAGATGCCAAGGAAACCACCGAATCGTGGGTTGGTCGGGCCTTTGGCAAAATCGCAGATTTGCAAATGGCAGCGGATGCAGGAAAGTTTGTTCATGACAGCTTTGACTCATCTATAAGAATGCCTACCGATAAGGTTGACAATGCCAAAGAGACGGTGAGAGGAGCAATGGATTCACGAATGGAGGGAGTAGCAAATGCCTATGGTGAGGCAAAAGATACAATGAATAAAGCTGTCGGTGCCGCTTCTGATAAGGCTCGTGAAGCAGTGGAGTATGGAAAAGAAACAGCTGTCAATGCATATAATACTGATAAAGTTGACAATGCCAAAGGGACGGTAAGAGGGGCAGTAGGATGTGGAGTGGACAGAGCAGCGAATGCCTATGGTGATGCAAAAAATACAATGAATAGCGCTATGGGTGTGGTTTCTGATAAGACTAATGATGCAATGGAGTATGGAAAACAAAGAGCCGCCGATGCATATAATACCAATAGAGTTGAGAATGCTAAAGAGACAGTGAAAGGGGCATTAGGTTCGGGAATGGACAAAGCTACAAATGCCTATGGAGAAGCAAAGAATACAATGAATAGGGCTATGGACACGGCTTCTGATAAGGCTAATGGTGCAGTGGAGTATGGAAAAGAAACAGCTGTCAATGCATATAGTAGCGATAGACTCGATAATGCCAAAGAGACGTTGAAAGGGGCAATGGGTTCCAGGACGGACAGAGCAGCGAATGCCTACGGTGAAGCAAAGAATACAGTAAATCGGGCAATGGATACGGTGTCTGACAAGACTAATGATGCAATGGAATATGGTAAAGAAAGAACTGCCAATACATATGATGGAGCCAAAGAGACGATGAACATGGCCTCAGATAAGGCCTATGATGCCAAAGAAAAGGTGGCGGGAGGAGTTGATTATGGAAGGGAAAGAGCAGTGAATTCTTATGATGAAGCGAAACAAAAGGTTGGGGAGTCATACTCGTCTGCTAAGGATAGTATGACTTCAAATGCCAAGGATAACTATGAGGCTGCCAAGGGAGGAATCGATTATGGAAGGGAAAGAGCAGCGGATGCATATGATGAAGCCCAACAAAAGGTTGGGGAGTCATACACGTCTGCTAAGGATAGCATGACTTCAAGTGCAAGGCAGAACTATGAGGCTGCAAAGGAGACCGCCTCGCAAGCTGCTGGTGATCTTGGGGCTACGATGAGGAATGCAGGTTCGGGGCAAATAAAAAAGAAAAGTTGCATGCGAGAGCATTTCCAAGCACAAGTAAATTCGTTGGTATTATTTACGATGTTTCTGAAAGCAACCAAACAGAAAATCCAACAAGATAAATTAAGAAAAAATAAAATAGCTAGATCAAGTGAGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03320 map03320

Pfam Domains

Protein Families

LEA_4

Protein Analysis

511

Amino Acids

54.58

Weight (kDa)

7.58

Isoelectric Point (pI)

12.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012562)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g13160
malus_domestica	MD02G1146200.v1.1 MD15G1260500.v1.1
prunus_persica	Prupe.7G155800_v2.0.a1 Prupe.7G155800_v2.0.a1 Prupe.I002400_v2.0.a1
pyrus_communis	pycom02g11580 pycom15g22770
rosa_chinensis	RchiOBHm_Chr2g0101381
rosa_laevigata	RLG00000017073
rosa_multiflora	Rmu_sc0006128.1_g000010
rosa_roxburghii	Rroxscaffold_2G00141350
rosa_rugosa	Rorug02G0098800 Rorug02G0098900
rosa_samantha	Rh2AG146400 Rh2BG151900 Rh2CG152400 Rh2DG152000
rosa_wichuraiana	Rw2G011410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	104
Acc36I	ACCTGC	2 cut(s)	104, 1364
AccB1I	GGYRCC	1 cut(s)	389
AcsI	RAATTY	2 cut(s)	1093, 1432
AfeI	AGCGCT	1 cut(s)	562
AfiI	CCNNNNNNNGG	2 cut(s)	177, 1249
AflIII	ACRYGT	1 cut(s)	1266
AgsI	TTSAA	4 cut(s)	106, 850, 1161, 1293
AjiI	CACGTC	1 cut(s)	1269
AjnI	CCWGG	1 cut(s)	866
AjuI	GAANNNNNNNTTGG	2 cut(s)	165, 197
AloI	GAACNNNNNNTCC	4 cut(s)	225, 257, 1360, 1392
AluBI	AGCT	8 cut(s)	137, 252, 383, 440, 701, 800, 1340, 1514
AluI	AGCT	8 cut(s)	137, 252, 383, 440, 701, 800, 1340, 1514
Alw26I	GTCTC	6 cut(s)	137, 296, 656, 836, 1001, 1319
Ama87I	CYCGRG	1 cut(s)	150
Aor51HI	AGCGCT	1 cut(s)	562
AoxI	GGCC	3 cut(s)	189, 1020, 1032
ApeKI	GCWGC	7 cut(s)	221, 521, 881, 1184, 1220, 1316, 1340
ApoI	RAATTY	2 cut(s)	1093, 1432
AspLEI	GCGC	1 cut(s)	563
AspS9I	GGNCC	1 cut(s)	189
AsuC2I	CCSGG	1 cut(s)	94
AsuHPI	GGTGA	5 cut(s)	319, 368, 548, 908, 1358
AvaI	CYCGRG	1 cut(s)	150
BanI	GGYRCC	1 cut(s)	389
BauI	CACGAG	2 cut(s)	140, 408
BbsI	GAAGAC	1 cut(s)	17
BbvI	GCAGC	7 cut(s)	233, 533, 893, 1171, 1232, 1303, 1327
BccI	CCATC	1 cut(s)	989
BceAI	ACGGC	1 cut(s)	768
BcgI	CGANNNNNNTGC	2 cut(s)	666, 700
BciT130I	CCWGG	1 cut(s)	868
BciVI	GTATCC	1 cut(s)	922
BcnI	CCSGG	1 cut(s)	94
BcoDI	GTCTC	6 cut(s)	137, 296, 656, 836, 1001, 1319
BfaI	CTAG	1 cut(s)	1515
BfoI	RGCGCY	1 cut(s)	564
BfuAI	ACCTGC	2 cut(s)	104, 1364
BfuI	GTATCC	1 cut(s)	922
Bme1390I	CCNGG	2 cut(s)	94, 868
BmeT110I	CYCGRG	1 cut(s)	150
BmgBI	CACGTC	1 cut(s)	1269
BmgT120I	GGNCC	1 cut(s)	189
BmiI	GGNNCC	3 cut(s)	391, 865, 1000
BmrFI	CCNGG	2 cut(s)	94, 868
BmsI	GCATC	8 cut(s)	145, 217, 529, 583, 616, 943, 1030, 1216
BpiI	GAAGAC	1 cut(s)	17
BplI	GAGNNNNNCTC	4 cut(s)	1118, 1150, 1316, 1348
Bpu10I	CCTNAGC	2 cut(s)	1143, 1275
BpuMI	CCSGG	1 cut(s)	94
Bsa29I	ATCGAT	1 cut(s)	1200
BsaI	GGTCTC	2 cut(s)	137, 1319
BsaJI	CCNNGG	4 cut(s)	93, 159, 1167, 1188
Bsc4I	CCNNNNNNNGG	2 cut(s)	177, 1249
Bse3DI	GCAATG	5 cut(s)	324, 603, 864, 930, 963
BseBI	CCWGG	1 cut(s)	868
BseCI	ATCGAT	1 cut(s)	1200
BseDI	CCNNGG	4 cut(s)	93, 159, 1167, 1188
BseGI	GGATG	4 cut(s)	48, 232, 509, 1231
BseLI	CCNNNNNNNGG	2 cut(s)	177, 1249
BseMI	GCAATG	5 cut(s)	324, 603, 864, 930, 963
BseMII	CTCAG	1 cut(s)	1038
BseRI	GAGGAG	2 cut(s)	327, 1077
BseXI	GCAGC	7 cut(s)	233, 533, 893, 1171, 1232, 1303, 1327
BsgI	GTGCAG	1 cut(s)	795
BshFI	GGCC	3 cut(s)	191, 1022, 1034
BshNI	GGYRCC	1 cut(s)	389
BshVI	ATCGAT	1 cut(s)	1200
BsiHKCI	CYCGRG	1 cut(s)	150
BsiSI	CCGG	1 cut(s)	93
BslFI	GGGAC	2 cut(s)	110, 496
BslI	CCNNNNNNNGG	2 cut(s)	177, 1249
BsmAI	GTCTC	6 cut(s)	137, 296, 656, 836, 1001, 1319
BsmBI	CGTCTC	3 cut(s)	296, 836, 1001
BsmFI	GGGAC	2 cut(s)	110, 496
BsmI	GAATGC	6 cut(s)	127, 276, 532, 658, 892, 1375
BsnI	GGCC	3 cut(s)	191, 1022, 1034
Bso31I	GGTCTC	2 cut(s)	137, 1319
BsoBI	CYCGRG	1 cut(s)	150
Bsp143I	GATC	2 cut(s)	1348, 1517
BspANI	GGCC	3 cut(s)	191, 1022, 1034
BspCNI	CTCAG	1 cut(s)	1037
BspDI	ATCGAT	1 cut(s)	1200
BspHI	TCATGA	1 cut(s)	244
BspLI	GGNNCC	3 cut(s)	391, 865, 1000
BspMI	ACCTGC	2 cut(s)	104, 1364
BspT107I	GGYRCC	1 cut(s)	389
BspTNI	GGTCTC	2 cut(s)	137, 1319
BsrDI	GCAATG	5 cut(s)	324, 603, 864, 930, 963
BssECI	CCNNGG	4 cut(s)	93, 159, 1167, 1188
BssMI	GATC	2 cut(s)	1348, 1517
BssSI	CACGAG	2 cut(s)	140, 408
BssT1I	CCWWGG	3 cut(s)	159, 1167, 1188
Bst2BI	CACGAG	2 cut(s)	140, 408
Bst2UI	CCWGG	1 cut(s)	868
Bst4CI	ACNGT	7 cut(s)	16, 307, 487, 667, 896, 913, 934
BstAPI	GCANNNNNTGC	4 cut(s)	227, 527, 887, 1226
BstC8I	GCNNGC	2 cut(s)	1338, 1406
BstDEI	CTNAG	3 cut(s)	1024, 1143, 1275
BstF5I	GGATG	4 cut(s)	48, 232, 509, 1231
BstH2I	RGCGCY	1 cut(s)	564
BstHHI	GCGC	1 cut(s)	563
BstKTI	GATC	2 cut(s)	1351, 1520
BstMAI	GTCTC	6 cut(s)	137, 296, 656, 836, 1001, 1319
BstMBI	GATC	2 cut(s)	1348, 1517
BstNI	CCWGG	1 cut(s)	868
BstNSI	RCATGY	1 cut(s)	1408
BstSCI	CCNGG	2 cut(s)	92, 866
BstV1I	GCAGC	7 cut(s)	233, 533, 893, 1171, 1232, 1303, 1327
BstV2I	GAAGAC	1 cut(s)	17
Bsu15I	ATCGAT	1 cut(s)	1200
BsuI	GTATCC	1 cut(s)	922
BsuRI	GGCC	3 cut(s)	191, 1022, 1034
BsuTUI	ATCGAT	1 cut(s)	1200
BtrI	CACGTC	1 cut(s)	1269
BtsCI	GGATG	4 cut(s)	48, 232, 509, 1231
BtsI	GCAGTG	3 cut(s)	423, 783, 1095
BtsIMutI	CAGTG	5 cut(s)	21, 423, 672, 783, 1095
BveI	ACCTGC	2 cut(s)	104, 1364
Cac8I	GCNNGC	2 cut(s)	1338, 1406
CciI	TCATGA	1 cut(s)	244
CfoI	GCGC	1 cut(s)	563
Cfr13I	GGNCC	1 cut(s)	189
ClaI	ATCGAT	1 cut(s)	1200
CviAII	CATG	4 cut(s)	245, 1018, 1285, 1405
DdeI	CTNAG	3 cut(s)	1024, 1143, 1275
DpnI	GATC	2 cut(s)	1350, 1519
DpnII	GATC	2 cut(s)	1348, 1517
Eco130I	CCWWGG	3 cut(s)	159, 1167, 1188
Eco147I	AGGCCT	1 cut(s)	1034
Eco31I	GGTCTC	2 cut(s)	137, 1319
Eco47III	AGCGCT	1 cut(s)	562
Eco88I	CYCGRG	1 cut(s)	150
EcoRI	GAATTC	1 cut(s)	1093
EcoRII	CCWGG	1 cut(s)	866
EcoT14I	CCWWGG	3 cut(s)	159, 1167, 1188
EcoT22I	ATGCAT	4 cut(s)	451, 631, 811, 1231
ErhI	CCWWGG	3 cut(s)	159, 1167, 1188
Esp3I	CGTCTC	3 cut(s)	296, 836, 1001
FaeI	CATG	4 cut(s)	248, 1021, 1288, 1408
FaqI	GGGAC	2 cut(s)	110, 496
FatI	CATG	4 cut(s)	244, 1017, 1284, 1404
FauI	CCCGC	1 cut(s)	1051
FauNDI	CATATG	2 cut(s)	991, 1231
FokI	GGATG	4 cut(s)	55, 239, 516, 1238
FspBI	CTAG	1 cut(s)	1515
GlaI	GCGC	1 cut(s)	562
HaeII	RGCGCY	1 cut(s)	564
HaeIII	GGCC	3 cut(s)	191, 1022, 1034
HapII	CCGG	1 cut(s)	93
HhaI	GCGC	1 cut(s)	563
Hin1II	CATG	4 cut(s)	248, 1021, 1288, 1408
Hin6I	GCGC	1 cut(s)	561
HinP1I	GCGC	1 cut(s)	561
HincII	GTYRAC	2 cut(s)	289, 469
HindII	GTYRAC	2 cut(s)	289, 469
HinfI	GANTC	8 cut(s)	74, 173, 257, 323, 825, 1127, 1197, 1259
HpaII	CCGG	1 cut(s)	93
HphI	GGTGA	5 cut(s)	319, 368, 548, 908, 1358
Hpy166II	GTNNAC	3 cut(s)	289, 469, 514
Hpy188I	TCNGA	6 cut(s)	400, 580, 760, 940, 1027, 1461
Hpy188III	TCNNGA	5 cut(s)	140, 245, 327, 410, 687
Hpy8I	GTNNAC	3 cut(s)	289, 469, 514
HpyAV	CCTTC	2 cut(s)	1071, 1203
HpyCH4III	ACNGT	7 cut(s)	16, 307, 487, 667, 896, 913, 934
HpyCH4IV	ACGT	2 cut(s)	845, 1268
HpyF3I	CTNAG	3 cut(s)	1024, 1143, 1275
HpySE526I	ACGT	2 cut(s)	845, 1268
Hsp92II	CATG	4 cut(s)	248, 1021, 1288, 1408
HspAI	GCGC	1 cut(s)	561
Kzo9I	GATC	2 cut(s)	1348, 1517
LmnI	GCTCC	2 cut(s)	314, 998
LpnPI	CCDG	8 cut(s)	42, 99, 106, 216, 853, 880, 1329, 1359
Lsp1109I	GCAGC	7 cut(s)	233, 533, 893, 1171, 1232, 1303, 1327
LweI	GCATC	8 cut(s)	145, 217, 529, 583, 616, 943, 1030, 1216
MaeI	CTAG	1 cut(s)	1515
MaeII	ACGT	2 cut(s)	845, 1268
MalI	GATC	2 cut(s)	1350, 1519
MboI	GATC	2 cut(s)	1348, 1517
MboII	GAAGA	2 cut(s)	19, 22
MluCI	AATT	5 cut(s)	100, 1093, 1432, 1493, 1528
MlyI	GAGTC	4 cut(s)	251, 819, 1136, 1268
MmeI	TCCRAC	2 cut(s)	44, 1507
Mph1103I	ATGCAT	4 cut(s)	451, 631, 811, 1231
MseI	TTAA	3 cut(s)	23, 1496, 1531
MspA1I	CMGCKG	4 cut(s)	224, 440, 800, 1223
MspI	CCGG	1 cut(s)	93
MspR9I	CCNGG	2 cut(s)	94, 868
Mva1269I	GAATGC	6 cut(s)	127, 276, 532, 658, 892, 1375
MvaI	CCWGG	1 cut(s)	868
NciI	CCSGG	1 cut(s)	94
NdeI	CATATG	2 cut(s)	991, 1231
NdeII	GATC	2 cut(s)	1348, 1517
NlaIII	CATG	4 cut(s)	248, 1021, 1288, 1408
NlaIV	GGNNCC	3 cut(s)	391, 865, 1000
NsiI	ATGCAT	4 cut(s)	451, 631, 811, 1231
NspI	RCATGY	1 cut(s)	1408
PaeI	GCATGC	1 cut(s)	1408
PagI	TCATGA	1 cut(s)	244
PaqCI	CACCTGC	1 cut(s)	104
PceI	AGGCCT	1 cut(s)	1034
PctI	GAATGC	6 cut(s)	127, 276, 532, 658, 892, 1375
PfeI	GAWTC	4 cut(s)	74, 173, 323, 1197
PfoI	TCCNGGA	1 cut(s)	866
PleI	GAGTC	4 cut(s)	251, 819, 1135, 1267
PpsI	GAGTC	4 cut(s)	251, 819, 1135, 1267
Psp6I	CCWGG	1 cut(s)	866
PspGI	CCWGG	1 cut(s)	866
PspN4I	GGNNCC	3 cut(s)	391, 865, 1000
PspPI	GGNCC	1 cut(s)	189
PsrI	GAACNNNNNNTAC	2 cut(s)	970, 1002
PvuII	CAGCTG	2 cut(s)	440, 800
SaqAI	TTAA	3 cut(s)	23, 1496, 1531
Sau3AI	GATC	2 cut(s)	1348, 1517
Sau96I	GGNCC	1 cut(s)	189
SchI	GAGTC	4 cut(s)	251, 819, 1136, 1268
ScrFI	CCNGG	2 cut(s)	94, 868
SfaNI	GCATC	8 cut(s)	145, 217, 529, 583, 616, 943, 1030, 1216
SphI	GCATGC	1 cut(s)	1408
Sse9I	AATT	5 cut(s)	100, 1093, 1432, 1493, 1528
SseBI	AGGCCT	1 cut(s)	1034
SspMI	CTAG	1 cut(s)	1515
StuI	AGGCCT	1 cut(s)	1034
StyD4I	CCNGG	2 cut(s)	92, 866
StyI	CCWWGG	3 cut(s)	159, 1167, 1188
TaaI	ACNGT	7 cut(s)	16, 307, 487, 667, 896, 913, 934
TaiI	ACGT	2 cut(s)	848, 1271
TaqI	TCGA	2 cut(s)	828, 1200
TasI	AATT	5 cut(s)	100, 1093, 1432, 1493, 1528
TauI	GCSGC	4 cut(s)	32, 56, 395, 623
TfiI	GAWTC	4 cut(s)	74, 173, 323, 1197
Tru1I	TTAA	3 cut(s)	23, 1496, 1531
Tru9I	TTAA	3 cut(s)	23, 1496, 1531
TscAI	CASTG	5 cut(s)	21, 423, 672, 783, 1095
TseI	GCWGC	7 cut(s)	221, 521, 881, 1184, 1220, 1316, 1340
TspDTI	ATGAA	7 cut(s)	233, 389, 569, 749, 1028, 1119, 1251
TspGWI	ACGGA	1 cut(s)	887
TspRI	CASTG	5 cut(s)	21, 423, 672, 783, 1095
XapI	RAATTY	2 cut(s)	1093, 1432
XceI	RCATGY	1 cut(s)	1408
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1051, 1250
XspI	CTAG	1 cut(s)	1515
Zsp2I	ATGCAT	4 cut(s)	451, 631, 811, 1231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.