Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0012562

Physical Location & Seq

Genomic Coordinates Forward (+)

12989084 .. 12992011

Gene Structure 2928 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG151900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1278 bp

ATGGGGAAGAGCACAACTTTGTTGCTGCTTGTGTTCTGGCTGGCTACGACGTCGGTTTGGGGCGAGCAGGCTGCTCAGGATGCCAAGGGAAACAGTGGATCATGGACTGAGTGGATTATGAATAAGCTATCACCGGGGCTTGGACTCAAGCAGGAGAGAGCAGCTAAGAATGTGGTGGACAAAGCTGGGGATGCAGCCTCCAAGGCCAGGGAAAAAGTGGACTCTTTTGGATCAAGATCGAAGTCCCAGGTGCATGACACAGCCAACAATGCCCATGACAATTGGGATCAGTCAATAAGAATGCCTACTGAGAGAGCTGGCAATGCTGCCCAAGAGACAATGGCAGAAGCAGTTGAAGCCGGAAAACATAAAGTAGCCAATGCCTACAATGATGGTAAAGAGAAACTTAACAGTGCGAAAGACATTGCTTCTGATAAAGTTTATGATGCTAAGGAGGCAACGGCAAATATGTATGGGGAGGCTAAGCAGAAAATGAATTCAGCTTCGCATGTGGCATCAAATAAAGCTGATGATGCGAAAGAGGCAACGTCGAATATGTATGGGGATGTTAAGCAGAAAACGAACTCAGCTTCAAATGTGGCTTCAGATAAAGCTTCTGGTGCGAAAGAGACAGCAGATAATATGTATGGGGAAGCTAAGCAGGGGATGAATTGGGCTACAAATATGGCTTCAGATAAAGCATATGATGCCAAGGAGGGAGCGGCCAATATGTATGGGGAAGCCAAGCAGAAAATGAGTTCAGCCTCAAATAAAGCTTCAGATAAAGCTTATGATACCAAAGAGACAACCGCTAATATGTATGGGGAAGCTAAGCAAAGAATTAATTATGCTTCAAATGTTGCATCAGATAGGGTTAATGATGCCAAAGAGACAGTGAAAGGGGCCATGGGTTGTGGAATGGAGAAAGCAGCAGGTGCATATGGTGATGCAAAGAATACAATGAAAACGGCTACGAGTACTGTGTCTGACAAGGCCAATGATGCAATGGAATATGGGAGAGAGAGAGCTGCAGATGCATATGATGGAGCAAAGGAGAAAATGAACTTCGCCCTTGATAAGGCAGACAGGGTAGCAGGAGGAATCGAGCGTGGAAGAGAAAAGGCAGCCAATTCCTATGATGAGGCAAAACAAAGGGTGGGTGAGACATACAGAGAAGCGAAGGATACTATATCCGAGCATACCAGGCATAACTATGAGGCTGCCAAGGAGAGGACATCGCAGGCAACAGGTGATCTTGGGGCTAAGATGAGAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03320 map03320

Pfam Domains

Protein Families

LEA_4

Protein Analysis

425

Amino Acids

45.73

Weight (kDa)

7.66

Isoelectric Point (pI)

23.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012562)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g13160
malus_domestica	MD02G1146200.v1.1 MD15G1260500.v1.1
prunus_persica	Prupe.7G155800_v2.0.a1 Prupe.7G155800_v2.0.a1 Prupe.I002400_v2.0.a1
pyrus_communis	pycom02g11580 pycom15g22770
rosa_chinensis	RchiOBHm_Chr2g0101381
rosa_laevigata	RLG00000017073
rosa_multiflora	Rmu_sc0006128.1_g000010
rosa_roxburghii	Rroxscaffold_2G00141350
rosa_rugosa	Rorug02G0098800 Rorug02G0098900
rosa_samantha	Rh2AG146400 Rh2BG151900 Rh2CG152400 Rh2DG152000
rosa_wichuraiana	Rw2G011410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	923
AatII	GACGTC	1 cut(s)	53
Acc36I	ACCTGC	1 cut(s)	923
AccBSI	CCGCTC	1 cut(s)	722
AciI	CCGC	2 cut(s)	722, 810
AclWI	GGATC	3 cut(s)	106, 238, 294
AcoI	YGGCCR	1 cut(s)	723
AcsI	RAATTY	1 cut(s)	496
AcuI	CTGAAG	3 cut(s)	588, 675, 762
AcyI	GRCGYC	1 cut(s)	50
AfaI	GTAC	1 cut(s)	979
AfiI	CCNNNNNNNGG	4 cut(s)	140, 207, 1078, 1230
AgsI	TTSAA	3 cut(s)	356, 594, 855
AjnI	CCWGG	3 cut(s)	206, 246, 1202
Alw21I	GWGCWC	1 cut(s)	14
Alw26I	GTCTC	5 cut(s)	329, 623, 797, 884, 1157
AlwI	GGATC	3 cut(s)	106, 238, 294
AoxI	GGCC	4 cut(s)	204, 723, 903, 993
ApeKI	GCWGC	9 cut(s)	25, 71, 161, 194, 326, 929, 1028, 1124, 1220
ApoI	RAATTY	1 cut(s)	496
AseI	ATTAAT	1 cut(s)	843
AspS9I	GGNCC	1 cut(s)	903
AsuC2I	CCSGG	1 cut(s)	135
AsuHPI	GGTGA	4 cut(s)	123, 956, 1172, 1262
Bbv12I	GWGCWC	1 cut(s)	14
BbvI	GCAGC	9 cut(s)	12, 58, 173, 206, 313, 941, 1015, 1136, 1207
BccI	CCATC	2 cut(s)	386, 1037
BceAI	ACGGC	2 cut(s)	477, 984
BcgI	CGANNNNNNTGC	2 cut(s)	53, 87
BciT130I	CCWGG	3 cut(s)	208, 248, 1204
BciVI	GTATCC	1 cut(s)	1177
BcnI	CCSGG	1 cut(s)	135
BcoDI	GTCTC	5 cut(s)	329, 623, 797, 884, 1157
BfmI	CTRYAG	1 cut(s)	1029
BfuAI	ACCTGC	1 cut(s)	923
BfuI	GTATCC	1 cut(s)	1177
BglI	GCCNNNNNGGC	1 cut(s)	203
BlpI	GCTNAGC	3 cut(s)	483, 657, 831
BmcAI	AGTACT	1 cut(s)	979
Bme1390I	CCNGG	4 cut(s)	135, 208, 248, 1204
BmgT120I	GGNCC	1 cut(s)	903
BmiI	GGNNCC	1 cut(s)	904
BmrFI	CCNGG	4 cut(s)	135, 208, 248, 1204
Bpu10I	CCTNAGC	2 cut(s)	75, 450
Bpu1102I	GCTNAGC	3 cut(s)	483, 657, 831
BpuEI	CTTGAG	1 cut(s)	131
BpuMI	CCSGG	1 cut(s)	135
BsaBI	GATNNNNATC	1 cut(s)	235
BsaHI	GRCGYC	1 cut(s)	50
BsaJI	CCNNGG	8 cut(s)	84, 134, 201, 207, 246, 711, 906, 1224
Bsc4I	CCNNNNNNNGG	4 cut(s)	140, 207, 1078, 1230
Bse3DI	GCAATG	3 cut(s)	328, 423, 1011
Bse8I	GATNNNNATC	1 cut(s)	235
BseBI	CCWGG	3 cut(s)	208, 248, 1204
BseDI	CCNNGG	8 cut(s)	84, 134, 201, 207, 246, 711, 906, 1224
BseGI	GGATG	4 cut(s)	85, 196, 571, 672
BseJI	GATNNNNATC	1 cut(s)	235
BseLI	CCNNNNNNNGG	4 cut(s)	140, 207, 1078, 1230
BseMI	GCAATG	3 cut(s)	328, 423, 1011
BseMII	CTCAG	4 cut(s)	89, 99, 300, 600
BseXI	GCAGC	9 cut(s)	12, 58, 173, 206, 313, 941, 1015, 1136, 1207
BseYI	CCCAGC	1 cut(s)	185
BshFI	GGCC	4 cut(s)	206, 725, 905, 995
BsiHKAI	GWGCWC	1 cut(s)	14
BsiSI	CCGG	2 cut(s)	134, 360
BslFI	GGGAC	1 cut(s)	229
BslI	CCNNNNNNNGG	4 cut(s)	140, 207, 1078, 1230
BsmAI	GTCTC	5 cut(s)	329, 623, 797, 884, 1157
BsmFI	GGGAC	1 cut(s)	229
BsmI	GAATGC	1 cut(s)	306
BsnI	GGCC	4 cut(s)	206, 725, 905, 995
Bsp1286I	GDGCHC	1 cut(s)	14
Bsp143I	GATC	5 cut(s)	98, 230, 236, 286, 1252
Bsp1720I	GCTNAGC	3 cut(s)	483, 657, 831
Bsp19I	CCATGG	1 cut(s)	906
BspACI	CCGC	2 cut(s)	722, 810
BspANI	GGCC	4 cut(s)	206, 725, 905, 995
BspCNI	CTCAG	4 cut(s)	88, 100, 301, 599
BspLI	GGNNCC	1 cut(s)	904
BspMAI	CTGCAG	1 cut(s)	1033
BspMI	ACCTGC	1 cut(s)	923
BspPI	GGATC	3 cut(s)	106, 238, 294
BspQI	GCTCTTC	1 cut(s)	2
BsrBI	CCGCTC	1 cut(s)	722
BsrDI	GCAATG	3 cut(s)	328, 423, 1011
BssECI	CCNNGG	8 cut(s)	84, 134, 201, 207, 246, 711, 906, 1224
BssMI	GATC	5 cut(s)	98, 230, 236, 286, 1252
BssNI	GRCGYC	1 cut(s)	50
BssT1I	CCWWGG	5 cut(s)	84, 201, 711, 906, 1224
Bst2UI	CCWGG	3 cut(s)	208, 248, 1204
Bst4CI	ACNGT	4 cut(s)	95, 413, 895, 982
Bst6I	CTCTTC	2 cut(s)	2, 1108
BstACI	GRCGYC	1 cut(s)	50
BstAPI	GCANNNNNTGC	2 cut(s)	707, 935
BstC8I	GCNNGC	5 cut(s)	42, 65, 69, 319, 1242
BstDSI	CCRYGG	1 cut(s)	906
BstENI	CCTNNNNNAGG	1 cut(s)	1076
BstF5I	GGATG	4 cut(s)	85, 196, 571, 672
BstKTI	GATC	5 cut(s)	101, 233, 239, 289, 1255
BstMAI	GTCTC	5 cut(s)	329, 623, 797, 884, 1157
BstMBI	GATC	5 cut(s)	98, 230, 236, 286, 1252
BstNI	CCWGG	3 cut(s)	208, 248, 1204
BstNSI	RCATGY	1 cut(s)	512
BstSCI	CCNGG	4 cut(s)	133, 206, 246, 1202
BstSFI	CTRYAG	1 cut(s)	1029
BstV1I	GCAGC	9 cut(s)	12, 58, 173, 206, 313, 941, 1015, 1136, 1207
BsuI	GTATCC	1 cut(s)	1177
BsuRI	GGCC	4 cut(s)	206, 725, 905, 995
BtgI	CCRYGG	1 cut(s)	906
BtgZI	GCGATG	1 cut(s)	1221
BtsCI	GGATG	4 cut(s)	85, 196, 571, 672
BtsIMutI	CAGTG	3 cut(s)	100, 418, 900
BveI	ACCTGC	1 cut(s)	923
Cac8I	GCNNGC	5 cut(s)	42, 65, 69, 319, 1242
Cfr13I	GGNCC	1 cut(s)	903
Csp6I	GTAC	1 cut(s)	978
CviAII	CATG	5 cut(s)	102, 254, 275, 509, 907
CviQI	GTAC	1 cut(s)	978
DpnI	GATC	5 cut(s)	100, 232, 238, 288, 1254
DpnII	GATC	5 cut(s)	98, 230, 236, 286, 1252
EaeI	YGGCCR	1 cut(s)	723
Eam1104I	CTCTTC	2 cut(s)	2, 1108
EarI	CTCTTC	2 cut(s)	2, 1108
Eco130I	CCWWGG	5 cut(s)	84, 201, 711, 906, 1224
Eco57I	CTGAAG	3 cut(s)	588, 675, 762
EcoNI	CCTNNNNNAGG	1 cut(s)	1076
EcoRI	GAATTC	1 cut(s)	496
EcoRII	CCWGG	3 cut(s)	206, 246, 1202
EcoT14I	CCWWGG	5 cut(s)	84, 201, 711, 906, 1224
EcoT22I	ATGCAT	1 cut(s)	1039
ErhI	CCWWGG	5 cut(s)	84, 201, 711, 906, 1224
FaeI	CATG	5 cut(s)	105, 257, 278, 512, 910
FalI	AAGNNNNNCTT	2 cut(s)	390, 422
FaqI	GGGAC	1 cut(s)	229
FatI	CATG	5 cut(s)	101, 253, 274, 508, 906
FauNDI	CATATG	3 cut(s)	703, 940, 1039
FokI	GGATG	4 cut(s)	92, 203, 578, 679
GsaI	CCCAGC	1 cut(s)	189
HaeIII	GGCC	4 cut(s)	206, 725, 905, 995
HapII	CCGG	2 cut(s)	134, 360
Hin1I	GRCGYC	1 cut(s)	50
Hin1II	CATG	5 cut(s)	105, 257, 278, 512, 910
HindIII	AAGCTT	3 cut(s)	612, 774, 786
HinfI	GANTC	3 cut(s)	144, 221, 1101
HpaII	CCGG	2 cut(s)	134, 360
HphI	GGTGA	4 cut(s)	123, 956, 1172, 1262
Hpy166II	GTNNAC	2 cut(s)	178, 220
Hpy188I	TCNGA	7 cut(s)	433, 607, 694, 781, 868, 988, 1195
Hpy188III	TCNNGA	2 cut(s)	77, 234
Hpy8I	GTNNAC	2 cut(s)	178, 220
Hpy99I	CGWCG	3 cut(s)	52, 55, 553
HpyAV	CCTTC	1 cut(s)	1174
HpyCH4III	ACNGT	4 cut(s)	95, 413, 895, 982
HpyCH4IV	ACGT	2 cut(s)	50, 548
HpyCH4V	TGCA	8 cut(s)	194, 253, 863, 938, 950, 1004, 1031, 1037
HpySE526I	ACGT	2 cut(s)	50, 548
Hsp92I	GRCGYC	1 cut(s)	50
Hsp92II	CATG	5 cut(s)	105, 257, 278, 512, 910
Kzo9I	GATC	5 cut(s)	98, 230, 236, 286, 1252
LguI	GCTCTTC	1 cut(s)	2
LmnI	GCTCC	2 cut(s)	719, 1046
Lsp1109I	GCAGC	9 cut(s)	12, 58, 173, 206, 313, 941, 1015, 1136, 1207
MaeII	ACGT	2 cut(s)	50, 548
MalI	GATC	5 cut(s)	100, 232, 238, 288, 1254
MbiI	CCGCTC	1 cut(s)	722
MboI	GATC	5 cut(s)	98, 230, 236, 286, 1252
MboII	GAAGA	2 cut(s)	19, 1125
MfeI	CAATTG	1 cut(s)	280
MhlI	GDGCHC	1 cut(s)	14
MluCI	AATT	7 cut(s)	280, 496, 670, 840, 844, 1129, 1273
MlyI	GAGTC	2 cut(s)	138, 215
Mph1103I	ATGCAT	1 cut(s)	1039
MseI	TTAA	4 cut(s)	408, 570, 843, 876
MslI	CAYNNNNRTG	1 cut(s)	1212
MspI	CCGG	2 cut(s)	134, 360
MspR9I	CCNGG	4 cut(s)	135, 208, 248, 1204
MunI	CAATTG	1 cut(s)	280
Mva1269I	GAATGC	1 cut(s)	306
MvaI	CCWGG	3 cut(s)	208, 248, 1204
NciI	CCSGG	1 cut(s)	135
NcoI	CCATGG	1 cut(s)	906
NdeI	CATATG	3 cut(s)	703, 940, 1039
NdeII	GATC	5 cut(s)	98, 230, 236, 286, 1252
NlaIII	CATG	5 cut(s)	105, 257, 278, 512, 910
NlaIV	GGNNCC	1 cut(s)	904
NsiI	ATGCAT	1 cut(s)	1039
NspI	RCATGY	1 cut(s)	512
PaqCI	CACCTGC	1 cut(s)	923
PciSI	GCTCTTC	1 cut(s)	2
PctI	GAATGC	1 cut(s)	306
PfeI	GAWTC	1 cut(s)	1101
PleI	GAGTC	2 cut(s)	138, 215
PpsI	GAGTC	2 cut(s)	138, 215
PshBI	ATTAAT	1 cut(s)	843
Psp6I	CCWGG	3 cut(s)	206, 246, 1202
PspFI	CCCAGC	1 cut(s)	185
PspGI	CCWGG	3 cut(s)	206, 246, 1202
PspN4I	GGNNCC	1 cut(s)	904
PspPI	GGNCC	1 cut(s)	903
PstI	CTGCAG	1 cut(s)	1033
RsaI	GTAC	1 cut(s)	979
RsaNI	GTAC	1 cut(s)	978
RseI	CAYNNNNRTG	1 cut(s)	1212
SapI	GCTCTTC	1 cut(s)	2
SaqAI	TTAA	4 cut(s)	408, 570, 843, 876
Sau3AI	GATC	5 cut(s)	98, 230, 236, 286, 1252
Sau96I	GGNCC	1 cut(s)	903
ScaI	AGTACT	1 cut(s)	979
SchI	GAGTC	2 cut(s)	138, 215
ScrFI	CCNGG	4 cut(s)	135, 208, 248, 1204
SduI	GDGCHC	1 cut(s)	14
SfcI	CTRYAG	1 cut(s)	1029
SmiMI	CAYNNNNRTG	1 cut(s)	1212
SmlI	CTYRAG	1 cut(s)	146
SmoI	CTYRAG	1 cut(s)	146
Sse9I	AATT	7 cut(s)	280, 496, 670, 840, 844, 1129, 1273
SsiI	CCGC	2 cut(s)	722, 810
StyD4I	CCNGG	4 cut(s)	133, 206, 246, 1202
StyI	CCWWGG	5 cut(s)	84, 201, 711, 906, 1224
TaaI	ACNGT	4 cut(s)	95, 413, 895, 982
TaiI	ACGT	2 cut(s)	53, 551
TaqI	TCGA	3 cut(s)	239, 551, 1104
TasI	AATT	7 cut(s)	280, 496, 670, 840, 844, 1129, 1273
TatI	WGTACW	1 cut(s)	977
TauI	GCSGC	1 cut(s)	725
TfiI	GAWTC	1 cut(s)	1101
Tru1I	TTAA	4 cut(s)	408, 570, 843, 876
Tru9I	TTAA	4 cut(s)	408, 570, 843, 876
TscAI	CASTG	3 cut(s)	100, 418, 900
TseI	GCWGC	9 cut(s)	25, 71, 161, 194, 326, 929, 1028, 1124, 1220
TspDTI	ATGAA	5 cut(s)	134, 509, 683, 977, 1076
TspRI	CASTG	3 cut(s)	100, 418, 900
VspI	ATTAAT	1 cut(s)	843
XagI	CCTNNNNNAGG	1 cut(s)	1076
XapI	RAATTY	1 cut(s)	496
XceI	RCATGY	1 cut(s)	512
XcmI	CCANNNNNNNNNTGG	2 cut(s)	214, 1003
ZraI	GACGTC	1 cut(s)	51
ZrmI	AGTACT	1 cut(s)	979
Zsp2I	ATGCAT	1 cut(s)	1039

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.