Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0012562

Physical Location & Seq

Genomic Coordinates Forward (+)

12583265 .. 12585802

Gene Structure 2538 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017073

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1230 bp

ATGGGAAAGAGCACAACTTTGTTGCTGCTTGTGTTCTGGCTGGCTACGGCGTCGGTTTGGGGCGAGCAGGCTGCTCAGGATGCCAAGGGAAACAGTGGATCATGGACTGAGTGGATTATGAATAAGCTATCACCGGGTCTTGGACTCAAGCAGGAGAGAGCAGCTAAGAATGTGGCGGGCAAAGCTGGGGATGCAGCCTCTAAGGCCAGGGAAAAAGTGGACTCTTTTGGATCAAGATCGAAGTCCCAGGTGCATGACGCAGCCAACAATGCCCATGACAATTGGGATCAGTCAATAAGAATGCCTACTGAGAGAGCTGGCAATGCTGCCCAAGAGACAATGGCAGAAGCAGTTGAAGCCGGAAAACATAAAGTAGCCAATGCCTACAATGATGGTAAAGAGAAACTTAACAGTGCAAAAGACATTGCTTCTGATAAAGCTTATGATGCTAAGGAGGCAACGGCAAATATGTATGGGGAGGCTAAGCAGAAAATGAACTCAGCTTCGCATGTGGCATCAAATAAAGCTGATGATGCCAAAGAGGCAATGTCGAATATGTATGGGGATGTTAAGCAGAAAACGAACTCAGCTTCAAATGTGGCTTCAGATAAAGCTTCTGGTGCCAAAGAGACAGCAGATAATATGTATGGGGAAGCTAAGCAGGGAATGAATTGGGCTACAAATGTGGCTTCAGATAAAGCATATGATGCCAAGGAGGGAGCGGCCAATATGTATGGGGAAGCCAAGCAGAAAATGAGTTCAGCCTCAAATAAAGCTTATGATACCAAAGAGACAACCGCTAATATGTATGGGGAAGCTAAGCAAAGAATTAATCATGCTTCAAATGTTGCATCAGATAGGGTTAATGATGCCAAAGAGACAGTGAAAGGGGCCATGGGTTGTGGAATGGACAAAGCAGCAGGTGCATATGGTGATGCAAAGAATACAATGAAAACGGCTACGAGTACTGTGTCTGACAAGGCCAATGATGCAATGGAATATGGGAGAGAGAGAGCTGCAGATGCATATGATGGAGCAAAGGAGAAAATGAACTTCGCCTCTGATAAGGCAGACAGGGTAGCAGGAGGAATCGAGCATGGAAGAGAAAAGGCAGCCAATTCCTATGATGAGGCAAAACAAAGGGTGGGTGAGACATACAGAGAAGCGAAGGATGCTATATCCGAGCATACCAGGCATAACTATGAGGCTGCCAAGGAGAGGGCATCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03320 map03320

Pfam Domains

Protein Families

LEA_4

Protein Analysis

410

Amino Acids

43.77

Weight (kDa)

7.11

Isoelectric Point (pI)

24.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012562)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g13160
malus_domestica	MD02G1146200.v1.1 MD15G1260500.v1.1
prunus_persica	Prupe.7G155800_v2.0.a1 Prupe.7G155800_v2.0.a1 Prupe.I002400_v2.0.a1
pyrus_communis	pycom02g11580 pycom15g22770
rosa_chinensis	RchiOBHm_Chr2g0101381
rosa_laevigata	RLG00000017073
rosa_multiflora	Rmu_sc0006128.1_g000010
rosa_roxburghii	Rroxscaffold_2G00141350
rosa_rugosa	Rorug02G0098800 Rorug02G0098900
rosa_samantha	Rh2AG146400 Rh2BG151900 Rh2CG152400 Rh2DG152000
rosa_wichuraiana	Rw2G011410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	911
Acc36I	ACCTGC	1 cut(s)	911
AccB1I	GGYRCC	1 cut(s)	620
AccBSI	CCGCTC	1 cut(s)	722
AciI	CCGC	3 cut(s)	176, 722, 798
AclWI	GGATC	3 cut(s)	106, 238, 294
AcoI	YGGCCR	1 cut(s)	723
AcuI	CTGAAG	2 cut(s)	588, 675
AcyI	GRCGYC	1 cut(s)	50
AfaI	GTAC	1 cut(s)	967
AfiI	CCNNNNNNNGG	2 cut(s)	140, 1218
AgsI	TTSAA	3 cut(s)	356, 594, 843
AjnI	CCWGG	3 cut(s)	206, 246, 1190
Alw21I	GWGCWC	1 cut(s)	14
Alw26I	GTCTC	5 cut(s)	329, 623, 785, 872, 1145
AlwI	GGATC	3 cut(s)	106, 238, 294
AoxI	GGCC	4 cut(s)	204, 723, 891, 981
AseI	ATTAAT	1 cut(s)	831
AspS9I	GGNCC	1 cut(s)	891
AsuC2I	CCSGG	1 cut(s)	135
AsuHPI	GGTGA	3 cut(s)	123, 944, 1160
BanI	GGYRCC	1 cut(s)	620
Bbv12I	GWGCWC	1 cut(s)	14
BccI	CCATC	2 cut(s)	386, 1025
BceAI	ACGGC	3 cut(s)	63, 477, 972
BcgI	CGANNNNNNTGC	2 cut(s)	53, 87
BciT130I	CCWGG	3 cut(s)	208, 248, 1192
BcnI	CCSGG	1 cut(s)	135
BcoDI	GTCTC	5 cut(s)	329, 623, 785, 872, 1145
BfmI	CTRYAG	1 cut(s)	1017
BfuAI	ACCTGC	1 cut(s)	911
BglI	GCCNNNNNGGC	2 cut(s)	203, 542
BlpI	GCTNAGC	3 cut(s)	483, 657, 819
BmcAI	AGTACT	1 cut(s)	967
Bme1390I	CCNGG	4 cut(s)	135, 208, 248, 1192
BmgT120I	GGNCC	1 cut(s)	891
BmiI	GGNNCC	2 cut(s)	622, 892
BmrFI	CCNGG	4 cut(s)	135, 208, 248, 1192
Bpu10I	CCTNAGC	2 cut(s)	75, 450
Bpu1102I	GCTNAGC	3 cut(s)	483, 657, 819
BpuEI	CTTGAG	1 cut(s)	131
BpuMI	CCSGG	1 cut(s)	135
BsaBI	GATNNNNATC	1 cut(s)	235
BsaHI	GRCGYC	1 cut(s)	50
BsaJI	CCNNGG	6 cut(s)	84, 207, 246, 711, 894, 1212
Bsc4I	CCNNNNNNNGG	2 cut(s)	140, 1218
Bse3DI	GCAATG	4 cut(s)	328, 423, 552, 999
Bse8I	GATNNNNATC	1 cut(s)	235
BseBI	CCWGG	3 cut(s)	208, 248, 1192
BseDI	CCNNGG	6 cut(s)	84, 207, 246, 711, 894, 1212
BseGI	GGATG	4 cut(s)	85, 196, 571, 1177
BseJI	GATNNNNATC	1 cut(s)	235
BseLI	CCNNNNNNNGG	2 cut(s)	140, 1218
BseMI	GCAATG	4 cut(s)	328, 423, 552, 999
BseMII	CTCAG	5 cut(s)	89, 99, 300, 513, 600
BseYI	CCCAGC	1 cut(s)	185
BshFI	GGCC	4 cut(s)	206, 725, 893, 983
BshNI	GGYRCC	1 cut(s)	620
BsiHKAI	GWGCWC	1 cut(s)	14
BsiSI	CCGG	2 cut(s)	134, 360
BslFI	GGGAC	1 cut(s)	229
BslI	CCNNNNNNNGG	2 cut(s)	140, 1218
BsmAI	GTCTC	5 cut(s)	329, 623, 785, 872, 1145
BsmFI	GGGAC	1 cut(s)	229
BsmI	GAATGC	1 cut(s)	306
BsnI	GGCC	4 cut(s)	206, 725, 893, 983
Bsp1286I	GDGCHC	1 cut(s)	14
Bsp143I	GATC	4 cut(s)	98, 230, 236, 286
Bsp1720I	GCTNAGC	3 cut(s)	483, 657, 819
Bsp19I	CCATGG	1 cut(s)	894
BspACI	CCGC	3 cut(s)	176, 722, 798
BspANI	GGCC	4 cut(s)	206, 725, 893, 983
BspCNI	CTCAG	5 cut(s)	88, 100, 301, 512, 599
BspLI	GGNNCC	2 cut(s)	622, 892
BspMAI	CTGCAG	1 cut(s)	1021
BspMI	ACCTGC	1 cut(s)	911
BspPI	GGATC	3 cut(s)	106, 238, 294
BspT107I	GGYRCC	1 cut(s)	620
BsrBI	CCGCTC	1 cut(s)	722
BsrDI	GCAATG	4 cut(s)	328, 423, 552, 999
BssECI	CCNNGG	6 cut(s)	84, 207, 246, 711, 894, 1212
BssMI	GATC	4 cut(s)	98, 230, 236, 286
BssNI	GRCGYC	1 cut(s)	50
BssT1I	CCWWGG	4 cut(s)	84, 711, 894, 1212
Bst2UI	CCWGG	3 cut(s)	208, 248, 1192
Bst4CI	ACNGT	4 cut(s)	95, 413, 883, 970
Bst6I	CTCTTC	1 cut(s)	1096
BstACI	GRCGYC	1 cut(s)	50
BstAPI	GCANNNNNTGC	2 cut(s)	707, 923
BstC8I	GCNNGC	5 cut(s)	42, 65, 69, 178, 319
BstDSI	CCRYGG	1 cut(s)	894
BstF5I	GGATG	4 cut(s)	85, 196, 571, 1177
BstKTI	GATC	4 cut(s)	101, 233, 239, 289
BstMAI	GTCTC	5 cut(s)	329, 623, 785, 872, 1145
BstMBI	GATC	4 cut(s)	98, 230, 236, 286
BstNI	CCWGG	3 cut(s)	208, 248, 1192
BstNSI	RCATGY	1 cut(s)	512
BstSCI	CCNGG	4 cut(s)	133, 206, 246, 1190
BstSFI	CTRYAG	1 cut(s)	1017
BsuRI	GGCC	4 cut(s)	206, 725, 893, 983
BtgI	CCRYGG	1 cut(s)	894
BtsCI	GGATG	4 cut(s)	85, 196, 571, 1177
BtsIMutI	CAGTG	3 cut(s)	100, 418, 888
BveI	ACCTGC	1 cut(s)	911
Cac8I	GCNNGC	5 cut(s)	42, 65, 69, 178, 319
Cfr13I	GGNCC	1 cut(s)	891
CseI	GACGC	2 cut(s)	39, 266
Csp6I	GTAC	1 cut(s)	966
CviAII	CATG	7 cut(s)	102, 254, 275, 509, 836, 895, 1097
CviQI	GTAC	1 cut(s)	966
DpnI	GATC	4 cut(s)	100, 232, 238, 288
DpnII	GATC	4 cut(s)	98, 230, 236, 286
EaeI	YGGCCR	1 cut(s)	723
Eam1104I	CTCTTC	1 cut(s)	1096
EarI	CTCTTC	1 cut(s)	1096
Eco130I	CCWWGG	4 cut(s)	84, 711, 894, 1212
Eco57I	CTGAAG	2 cut(s)	588, 675
EcoRII	CCWGG	3 cut(s)	206, 246, 1190
EcoT14I	CCWWGG	4 cut(s)	84, 711, 894, 1212
EcoT22I	ATGCAT	1 cut(s)	1027
ErhI	CCWWGG	4 cut(s)	84, 711, 894, 1212
FaeI	CATG	7 cut(s)	105, 257, 278, 512, 839, 898, 1100
FalI	AAGNNNNNCTT	2 cut(s)	390, 422
FaqI	GGGAC	1 cut(s)	229
FatI	CATG	7 cut(s)	101, 253, 274, 508, 835, 894, 1096
FauI	CCCGC	1 cut(s)	169
FauNDI	CATATG	3 cut(s)	703, 928, 1027
FokI	GGATG	4 cut(s)	92, 203, 578, 1184
GsaI	CCCAGC	1 cut(s)	189
HaeIII	GGCC	4 cut(s)	206, 725, 893, 983
HapII	CCGG	2 cut(s)	134, 360
HgaI	GACGC	2 cut(s)	39, 266
Hin1I	GRCGYC	1 cut(s)	50
Hin1II	CATG	7 cut(s)	105, 257, 278, 512, 839, 898, 1100
HindIII	AAGCTT	3 cut(s)	438, 612, 774
HinfI	GANTC	3 cut(s)	144, 221, 1089
HpaII	CCGG	2 cut(s)	134, 360
HphI	GGTGA	3 cut(s)	123, 944, 1160
Hpy166II	GTNNAC	1 cut(s)	220
Hpy188I	TCNGA	7 cut(s)	433, 607, 694, 856, 976, 1063, 1183
Hpy188III	TCNNGA	2 cut(s)	77, 234
Hpy8I	GTNNAC	1 cut(s)	220
Hpy99I	CGWCG	1 cut(s)	55
HpyAV	CCTTC	1 cut(s)	1162
HpyCH4III	ACNGT	4 cut(s)	95, 413, 883, 970
HpyCH4V	TGCA	9 cut(s)	194, 253, 416, 851, 926, 938, 992, 1019, 1025
Hsp92I	GRCGYC	1 cut(s)	50
Hsp92II	CATG	7 cut(s)	105, 257, 278, 512, 839, 898, 1100
Kzo9I	GATC	4 cut(s)	98, 230, 236, 286
LmnI	GCTCC	2 cut(s)	719, 1034
MalI	GATC	4 cut(s)	100, 232, 238, 288
MbiI	CCGCTC	1 cut(s)	722
MboI	GATC	4 cut(s)	98, 230, 236, 286
MboII	GAAGA	1 cut(s)	1113
MfeI	CAATTG	1 cut(s)	280
MhlI	GDGCHC	1 cut(s)	14
MluCI	AATT	4 cut(s)	280, 670, 828, 1117
MlyI	GAGTC	2 cut(s)	138, 215
Mph1103I	ATGCAT	1 cut(s)	1027
MseI	TTAA	4 cut(s)	408, 570, 831, 864
MslI	CAYNNNNRTG	1 cut(s)	1200
MspI	CCGG	2 cut(s)	134, 360
MspR9I	CCNGG	4 cut(s)	135, 208, 248, 1192
MunI	CAATTG	1 cut(s)	280
Mva1269I	GAATGC	1 cut(s)	306
MvaI	CCWGG	3 cut(s)	208, 248, 1192
NciI	CCSGG	1 cut(s)	135
NcoI	CCATGG	1 cut(s)	894
NdeI	CATATG	3 cut(s)	703, 928, 1027
NdeII	GATC	4 cut(s)	98, 230, 236, 286
NlaIII	CATG	7 cut(s)	105, 257, 278, 512, 839, 898, 1100
NlaIV	GGNNCC	2 cut(s)	622, 892
NsiI	ATGCAT	1 cut(s)	1027
NspI	RCATGY	1 cut(s)	512
PaqCI	CACCTGC	1 cut(s)	911
PctI	GAATGC	1 cut(s)	306
PfeI	GAWTC	1 cut(s)	1089
PleI	GAGTC	2 cut(s)	138, 215
PpsI	GAGTC	2 cut(s)	138, 215
PshBI	ATTAAT	1 cut(s)	831
Psp6I	CCWGG	3 cut(s)	206, 246, 1190
PspFI	CCCAGC	1 cut(s)	185
PspGI	CCWGG	3 cut(s)	206, 246, 1190
PspN4I	GGNNCC	2 cut(s)	622, 892
PspPI	GGNCC	1 cut(s)	891
PstI	CTGCAG	1 cut(s)	1021
RsaI	GTAC	1 cut(s)	967
RsaNI	GTAC	1 cut(s)	966
RseI	CAYNNNNRTG	1 cut(s)	1200
SaqAI	TTAA	4 cut(s)	408, 570, 831, 864
Sau3AI	GATC	4 cut(s)	98, 230, 236, 286
Sau96I	GGNCC	1 cut(s)	891
ScaI	AGTACT	1 cut(s)	967
SchI	GAGTC	2 cut(s)	138, 215
ScrFI	CCNGG	4 cut(s)	135, 208, 248, 1192
SduI	GDGCHC	1 cut(s)	14
SfcI	CTRYAG	1 cut(s)	1017
SmiMI	CAYNNNNRTG	1 cut(s)	1200
SmlI	CTYRAG	1 cut(s)	146
SmoI	CTYRAG	1 cut(s)	146
Sse9I	AATT	4 cut(s)	280, 670, 828, 1117
SsiI	CCGC	3 cut(s)	176, 722, 798
StyD4I	CCNGG	4 cut(s)	133, 206, 246, 1190
StyI	CCWWGG	4 cut(s)	84, 711, 894, 1212
TaaI	ACNGT	4 cut(s)	95, 413, 883, 970
TaqI	TCGA	3 cut(s)	239, 551, 1092
TasI	AATT	4 cut(s)	280, 670, 828, 1117
TatI	WGTACW	1 cut(s)	965
TauI	GCSGC	1 cut(s)	725
TfiI	GAWTC	1 cut(s)	1089
Tru1I	TTAA	4 cut(s)	408, 570, 831, 864
Tru9I	TTAA	4 cut(s)	408, 570, 831, 864
TscAI	CASTG	3 cut(s)	100, 418, 888
TspDTI	ATGAA	5 cut(s)	134, 509, 683, 965, 1064
TspRI	CASTG	3 cut(s)	100, 418, 888
VspI	ATTAAT	1 cut(s)	831
XceI	RCATGY	1 cut(s)	512
XcmI	CCANNNNNNNNNTGG	2 cut(s)	214, 991
ZrmI	AGTACT	1 cut(s)	967
Zsp2I	ATGCAT	1 cut(s)	1027

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.