Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

scaffold_191

Orthogroup ID

OG0012562

Physical Location & Seq

Genomic Coordinates Reverse (-)

781 .. 3492

Gene Structure 2712 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.I002400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGGGGAAGAGAGGAGTGTTTTTGTTTTTGTTGTTGGCGTTGTGGCTGGCTATGTCTGCAGGGACTTGGGGACAGGACGCCAAGGAGACGCTGAACTTGGCTGCTGGAACAGCCCAGCACAAAACGCACGAGACCTTCAAAGCTGCCAAGGAAAACACCGACTCGTGGGTTGATCGTACCTTCGACAAAATCGCAGAGGGGTTAGGATTCGGCCAGGAAAATGCAAAAGAGAAGGCTAAGAATATGGGGGACAAAGCTGGGGATGCAGCCTCTGTGGCTACAGAAAGATTAAGAATGAGCACATTTGGATCTTGTAATTATTTATTACTACCTTATTCTTTCACAGATGAAGTAATTAATAAGTCAATTAGTTCTTCAAACAAGTATTTGATTTCATGCTTCTGGGTTTTACTTTATGTATTCTCAACATATGCTTCTCTGATTTCCCAAATGGCAGCGGACACCGATTCTGTTCATGACAACTTTGATCCCTCGATAAGGATGCCCACTGATACAATTGACAATGCCAAAGAGACCGTGACAAGGGCAATGGGTTCTGGAATGGATAGAGCAGCAAATGCCTACGATGAAGCAAATAATACAATGAATAGGGCTACAGGCGCGGCTTCTGATAAGGCTTATGATGCAATGGAATATGGAAAAGACAGAACTGCCAATGCCTATGATGGAGCCAAGGAGGGAGTGAACATGGCATCCAATAAGGACTACGACGCCAAAGAGACGGTGAGAGGGGCAATGGGTTCTGGAATGGACAGAGCAGGGTTTATGTTGAAGGAGCAGGGTTTATCAGTCCATTCTGCTACTTCTAAACCTCCCCATATAAACTGGCAAGGAACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

287

Amino Acids

31.13

Weight (kDa)

5.6

Isoelectric Point (pI)

27.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012562)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g13160
malus_domestica	MD02G1146200.v1.1 MD15G1260500.v1.1
prunus_persica	Prupe.7G155800_v2.0.a1 Prupe.7G155800_v2.0.a1 Prupe.I002400_v2.0.a1
pyrus_communis	pycom02g11580 pycom15g22770
rosa_chinensis	RchiOBHm_Chr2g0101381
rosa_laevigata	RLG00000017073
rosa_multiflora	Rmu_sc0006128.1_g000010
rosa_roxburghii	Rroxscaffold_2G00141350
rosa_rugosa	Rorug02G0098800 Rorug02G0098900
rosa_samantha	Rh2AG146400 Rh2BG151900 Rh2CG152400 Rh2DG152000
rosa_wichuraiana	Rw2G011410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	623
AciI	CCGC	2 cut(s)	458, 623
AclWI	GGATC	2 cut(s)	316, 482
AcoI	YGGCCR	1 cut(s)	211
AcyI	GRCGYC	2 cut(s)	78, 732
AfaI	GTAC	1 cut(s)	178
AfiI	CCNNNNNNNGG	3 cut(s)	165, 498, 543
AgsI	TTSAA	3 cut(s)	139, 378, 793
AjnI	CCWGG	1 cut(s)	213
AloI	GAACNNNNNNTCC	2 cut(s)	698, 730
AluBI	AGCT	2 cut(s)	143, 257
AluI	AGCT	2 cut(s)	143, 257
Alw21I	GWGCWC	1 cut(s)	302
Alw26I	GTCTC	4 cut(s)	80, 125, 527, 734
AlwI	GGATC	2 cut(s)	316, 482
AlwNI	CAGNNNCTG	1 cut(s)	272
AoxI	GGCC	1 cut(s)	211
ApeKI	GCWGC	5 cut(s)	101, 143, 266, 455, 572
AseI	ATTAAT	1 cut(s)	357
AspLEI	GCGC	1 cut(s)	623
AsuHPI	GGTGA	1 cut(s)	757
BauI	CACGAG	2 cut(s)	128, 163
Bbv12I	GWGCWC	1 cut(s)	302
BbvI	GCAGC	5 cut(s)	88, 130, 278, 467, 584
BccI	CCATC	1 cut(s)	680
BcgI	CGANNNNNNTGC	2 cut(s)	484, 518
BciT130I	CCWGG	1 cut(s)	215
BcoDI	GTCTC	4 cut(s)	80, 125, 527, 734
BfaI	CTAG	1 cut(s)	859
BfmI	CTRYAG	3 cut(s)	57, 279, 615
BglI	GCCNNNNNGGC	1 cut(s)	275
BisI	GCNGC	6 cut(s)	102, 144, 267, 456, 573, 624
BlsI	GCNGC	6 cut(s)	103, 145, 268, 457, 574, 625
Bme1390I	CCNGG	1 cut(s)	215
BmiI	GGNNCC	2 cut(s)	691, 856
BmrFI	CCNGG	1 cut(s)	215
BmsI	GCATC	4 cut(s)	253, 492, 634, 722
BsaHI	GRCGYC	2 cut(s)	78, 732
BsaI	GGTCTC	2 cut(s)	125, 527
BsaJI	CCNNGG	3 cut(s)	81, 147, 693
Bsc4I	CCNNNNNNNGG	3 cut(s)	165, 498, 543
Bse1I	ACTGG	1 cut(s)	851
Bse3DI	GCAATG	3 cut(s)	555, 654, 762
BseBI	CCWGG	1 cut(s)	215
BseDI	CCNNGG	3 cut(s)	81, 147, 693
BseGI	GGATG	3 cut(s)	268, 507, 713
BseLI	CCNNNNNNNGG	3 cut(s)	165, 498, 543
BseMI	GCAATG	3 cut(s)	555, 654, 762
BseNI	ACTGG	1 cut(s)	851
BseRI	GAGGAG	1 cut(s)	27
BseXI	GCAGC	5 cut(s)	88, 130, 278, 467, 584
BseYI	CCCAGC	2 cut(s)	114, 257
Bsh1236I	CGCG	1 cut(s)	623
BshFI	GGCC	1 cut(s)	213
BsiHKAI	GWGCWC	1 cut(s)	302
BslFI	GGGAC	3 cut(s)	76, 84, 263
BslI	CCNNNNNNNGG	3 cut(s)	165, 498, 543
BsmAI	GTCTC	4 cut(s)	80, 125, 527, 734
BsmBI	CGTCTC	2 cut(s)	80, 734
BsmFI	GGGAC	3 cut(s)	76, 84, 263
BsnI	GGCC	1 cut(s)	213
Bso31I	GGTCTC	2 cut(s)	125, 527
Bsp1286I	GDGCHC	1 cut(s)	302
Bsp143I	GATC	3 cut(s)	172, 308, 487
BspACI	CCGC	2 cut(s)	458, 623
BspANI	GGCC	1 cut(s)	213
BspFNI	CGCG	1 cut(s)	623
BspHI	TCATGA	1 cut(s)	475
BspLI	GGNNCC	2 cut(s)	691, 856
BspMAI	CTGCAG	1 cut(s)	61
BspPI	GGATC	2 cut(s)	316, 482
BspTNI	GGTCTC	2 cut(s)	125, 527
BsrDI	GCAATG	3 cut(s)	555, 654, 762
BsrI	ACTGG	1 cut(s)	851
BssECI	CCNNGG	3 cut(s)	81, 147, 693
BssMI	GATC	3 cut(s)	172, 308, 487
BssNI	GRCGYC	2 cut(s)	78, 732
BssSI	CACGAG	2 cut(s)	128, 163
BssT1I	CCWWGG	3 cut(s)	81, 147, 693
Bst2BI	CACGAG	2 cut(s)	128, 163
Bst2UI	CCWGG	1 cut(s)	215
Bst4CI	ACNGT	2 cut(s)	538, 745
Bst6I	CTCTTC	1 cut(s)	2
BstACI	GRCGYC	2 cut(s)	78, 732
BstAPI	GCANNNNNTGC	1 cut(s)	578
BstC8I	GCNNGC	1 cut(s)	48
BstDEI	CTNAG	1 cut(s)	237
BstENI	CCTNNNNNAGG	1 cut(s)	496
BstF5I	GGATG	3 cut(s)	268, 507, 713
BstFNI	CGCG	1 cut(s)	623
BstHHI	GCGC	1 cut(s)	623
BstKTI	GATC	3 cut(s)	175, 311, 490
BstMAI	GTCTC	4 cut(s)	80, 125, 527, 734
BstMBI	GATC	3 cut(s)	172, 308, 487
BstMWI	GCNNNNNNNGC	8 cut(s)	56, 110, 124, 263, 275, 578, 620, 644
BstNI	CCWGG	1 cut(s)	215
BstSCI	CCNGG	1 cut(s)	213
BstSFI	CTRYAG	3 cut(s)	57, 279, 615
BstUI	CGCG	1 cut(s)	623
BstV1I	GCAGC	5 cut(s)	88, 130, 278, 467, 584
BstX2I	RGATCY	1 cut(s)	308
BstYI	RGATCY	1 cut(s)	308
BsuRI	GGCC	1 cut(s)	213
BtsCI	GGATG	3 cut(s)	268, 507, 713
BtsIMutI	CAGTG	1 cut(s)	507
Cac8I	GCNNGC	1 cut(s)	48
CaiI	CAGNNNCTG	1 cut(s)	272
CciI	TCATGA	1 cut(s)	475
CfoI	GCGC	1 cut(s)	623
CseI	GACGC	3 cut(s)	86, 97, 740
Csp6I	GTAC	1 cut(s)	177
CviAII	CATG	3 cut(s)	396, 476, 709
CviQI	GTAC	1 cut(s)	177
DdeI	CTNAG	1 cut(s)	237
DpnI	GATC	3 cut(s)	174, 310, 489
DpnII	GATC	3 cut(s)	172, 308, 487
EaeI	YGGCCR	1 cut(s)	211
Eam1104I	CTCTTC	1 cut(s)	2
EarI	CTCTTC	1 cut(s)	2
Eco130I	CCWWGG	3 cut(s)	81, 147, 693
Eco31I	GGTCTC	2 cut(s)	125, 527
EcoNI	CCTNNNNNAGG	1 cut(s)	496
EcoRII	CCWGG	1 cut(s)	213
EcoT14I	CCWWGG	3 cut(s)	81, 147, 693
ErhI	CCWWGG	3 cut(s)	81, 147, 693
Esp3I	CGTCTC	2 cut(s)	80, 734
FaeI	CATG	3 cut(s)	399, 479, 712
FaqI	GGGAC	3 cut(s)	76, 84, 263
FatI	CATG	3 cut(s)	395, 475, 708
FauNDI	CATATG	1 cut(s)	430
Fnu4HI	GCNGC	6 cut(s)	102, 144, 267, 456, 573, 624
FokI	GGATG	3 cut(s)	275, 514, 700
Fsp4HI	GCNGC	6 cut(s)	102, 144, 267, 456, 573, 624
FspBI	CTAG	1 cut(s)	859
GlaI	GCGC	1 cut(s)	622
GluI	GCNGC	6 cut(s)	102, 144, 267, 456, 573, 624
GsaI	CCCAGC	2 cut(s)	118, 261
HaeIII	GGCC	1 cut(s)	213
HgaI	GACGC	3 cut(s)	86, 97, 740
HhaI	GCGC	1 cut(s)	623
Hin1I	GRCGYC	2 cut(s)	78, 732
Hin1II	CATG	3 cut(s)	399, 479, 712
Hin6I	GCGC	1 cut(s)	621
HinP1I	GCGC	1 cut(s)	621
HinfI	GANTC	3 cut(s)	161, 207, 467
HphI	GGTGA	1 cut(s)	757
Hpy166II	GTNNAC	1 cut(s)	706
Hpy188I	TCNGA	2 cut(s)	441, 631
Hpy188III	TCNNGA	3 cut(s)	476, 558, 765
Hpy8I	GTNNAC	1 cut(s)	706
Hpy99I	CGWCG	1 cut(s)	734
HpyAV	CCTTC	4 cut(s)	145, 190, 226, 787
HpyCH4III	ACNGT	2 cut(s)	538, 745
HpyCH4V	TGCA	4 cut(s)	59, 224, 266, 647
HpyF10VI	GCNNNNNNNGC	8 cut(s)	56, 110, 124, 263, 275, 578, 620, 644
HpyF3I	CTNAG	1 cut(s)	237
Hsp92I	GRCGYC	2 cut(s)	78, 732
Hsp92II	CATG	3 cut(s)	399, 479, 712
HspAI	GCGC	1 cut(s)	621
Kzo9I	GATC	3 cut(s)	172, 308, 487
LmnI	GCTCC	2 cut(s)	689, 796
Lsp1109I	GCAGC	5 cut(s)	88, 130, 278, 467, 584
LweI	GCATC	4 cut(s)	253, 492, 634, 722
MaeI	CTAG	1 cut(s)	859
MaeIII	GTNAC	1 cut(s)	538
MalI	GATC	3 cut(s)	174, 310, 489
MboI	GATC	3 cut(s)	172, 308, 487
MboII	GAAGA	2 cut(s)	19, 366
MfeI	CAATTG	1 cut(s)	516
MflI	RGATCY	1 cut(s)	308
MhlI	GDGCHC	1 cut(s)	302
MluCI	AATT	4 cut(s)	316, 354, 366, 516
MlyI	GAGTC	1 cut(s)	155
MnlI	CCTC	7 cut(s)	5, 190, 280, 502, 691, 743, 843
MseI	TTAA	2 cut(s)	290, 357
MspA1I	CMGCKG	1 cut(s)	458
MspR9I	CCNGG	1 cut(s)	215
MunI	CAATTG	1 cut(s)	516
MvaI	CCWGG	1 cut(s)	215
MvnI	CGCG	1 cut(s)	623
MwoI	GCNNNNNNNGC	8 cut(s)	56, 110, 124, 263, 275, 578, 620, 644
NdeI	CATATG	1 cut(s)	430
NdeII	GATC	3 cut(s)	172, 308, 487
NlaIII	CATG	3 cut(s)	399, 479, 712
NlaIV	GGNNCC	2 cut(s)	691, 856
NmuCI	GTSAC	1 cut(s)	538
PagI	TCATGA	1 cut(s)	475
PfeI	GAWTC	2 cut(s)	207, 467
PkrI	GCNGC	6 cut(s)	103, 145, 268, 457, 574, 625
PleI	GAGTC	1 cut(s)	155
PpsI	GAGTC	1 cut(s)	155
PshBI	ATTAAT	1 cut(s)	357
Psp6I	CCWGG	1 cut(s)	213
PspFI	CCCAGC	2 cut(s)	114, 257
PspGI	CCWGG	1 cut(s)	213
PspN4I	GGNNCC	2 cut(s)	691, 856
PstI	CTGCAG	1 cut(s)	61
PstNI	CAGNNNCTG	1 cut(s)	272
PsuI	RGATCY	1 cut(s)	308
RsaI	GTAC	1 cut(s)	178
RsaNI	GTAC	1 cut(s)	177
SaqAI	TTAA	2 cut(s)	290, 357
SatI	GCNGC	6 cut(s)	102, 144, 267, 456, 573, 624
Sau3AI	GATC	3 cut(s)	172, 308, 487
SchI	GAGTC	1 cut(s)	155
ScrFI	CCNGG	1 cut(s)	215
SduI	GDGCHC	1 cut(s)	302
SetI	ASST	7 cut(s)	137, 145, 182, 259, 334, 835, 860
SfaNI	GCATC	4 cut(s)	253, 492, 634, 722
SfcI	CTRYAG	3 cut(s)	57, 279, 615
Sse9I	AATT	4 cut(s)	316, 354, 366, 516
SsiI	CCGC	2 cut(s)	458, 623
SspMI	CTAG	1 cut(s)	859
StyD4I	CCNGG	1 cut(s)	213
StyI	CCWWGG	3 cut(s)	81, 147, 693
TaaI	ACNGT	2 cut(s)	538, 745
TaqI	TCGA	2 cut(s)	183, 494
TasI	AATT	4 cut(s)	316, 354, 366, 516
TauI	GCSGC	1 cut(s)	626
TfiI	GAWTC	2 cut(s)	207, 467
Tru1I	TTAA	2 cut(s)	290, 357
Tru9I	TTAA	2 cut(s)	290, 357
TscAI	CASTG	1 cut(s)	514
TseFI	GTSAC	1 cut(s)	538
TseI	GCWGC	5 cut(s)	101, 143, 266, 455, 572
Tsp45I	GTSAC	1 cut(s)	538
TspDTI	ATGAA	5 cut(s)	363, 384, 464, 603, 620
TspRI	CASTG	1 cut(s)	514
VspI	ATTAAT	1 cut(s)	357
XagI	CCTNNNNNAGG	1 cut(s)	496
XspI	CTAG	1 cut(s)	859

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.