FvH4_1g13290

Belongs to the adaptor complexes small subunit family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0009137
Physical Location & Seq
Reverse (-)
7295878 .. 7297408
1531 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g13290.t1

Sequence Viewer

Length: 501 bp
ATGATACAGGCGGTGATGGTGATCAATACTCAGGGCAAGCCTCGCCTTGCCAAGTTCTACGAATTTCAGCCTGTGGAGAAGCAACAGGAGCTAATACGCAGCGTTTATACAGTTTTGAGCAGTAGAGCGGAGGATGTGAGCAATTTTCTGGATGTGGAGTCTATTTTTGGTCCGGATACTCGGCTTGTATACAAGCATTTTGCAACTTTGTACTTCGTCTTTGTTTTCGATAGTTCTGAAAACGAGCTTGCCATGCTCGACTTGATACAAGTTTTTGTTGAAACTTTGGACAAATGCTTCAAGAATGTATGCGAGCTTGATGTGGTGCTCAATTACAGCAAGTTGCATACTGTATTGGATGAGATTATTTTTGGAGGTCAAGTGCTGGAAACAAGTTCTACCGAAGTTCTGAAGGCAGTTGAAGAAATCGCAAGGTTAGAAACAGCTTCAAACGCTATTTCATTGGTTCCAAAATCTGTTTCTAGCTGGAGGAGTCGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04142 map04142
Pfam Domains
Protein Families
Clat_adaptor_s

Protein Analysis

167

Amino Acids

18.9

Weight (kDa)

4.88

Isoelectric Point (pI)

32.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Clat_adaptor_s PF01217 1 - 145 1.7e-48 Clathrin adaptor complex small chain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 128
AccI GTMKAC 1 cut(s) 189
AccIII TCCGGA 1 cut(s) 172
AciI CCGC 2 cut(s) 11, 128
AcsI RAATTY 1 cut(s) 62
AcuI CTGAAG 1 cut(s) 431
AfaI GTAC 1 cut(s) 212
AgsI TTSAA 4 cut(s) 281, 301, 422, 450
AjuI GAANNNNNNNTTGG 2 cut(s) 463, 495
AluBI AGCT 5 cut(s) 91, 247, 316, 446, 486
AluI AGCT 5 cut(s) 91, 247, 316, 446, 486
Alw21I GWGCWC 1 cut(s) 330
Aor13HI TCCGGA 1 cut(s) 172
ApeKI GCWGC 1 cut(s) 99
ApoI RAATTY 1 cut(s) 62
AspS9I GGNCC 1 cut(s) 170
AsuHPI GGTGA 2 cut(s) 25, 31
AvaII GGWCC 1 cut(s) 170
Bbv12I GWGCWC 1 cut(s) 330
BbvI GCAGC 1 cut(s) 111
BccI CCATC 1 cut(s) 10
BciVI GTATCC 1 cut(s) 169
BclI TGATCA 1 cut(s) 21
BfaI CTAG 1 cut(s) 483
BfuI GTATCC 1 cut(s) 169
BisI GCNGC 1 cut(s) 100
BlsI GCNGC 1 cut(s) 101
Bme18I GGWCC 1 cut(s) 170
BmgT120I GGNCC 1 cut(s) 170
BmiI GGNNCC 1 cut(s) 468
BsaBI GATNNNNATC 1 cut(s) 20
BsaWI WCCGGW 1 cut(s) 172
BsaXI ACNNNNNCTCC 2 cut(s) 366, 396
Bse8I GATNNNNATC 1 cut(s) 20
BseAI TCCGGA 1 cut(s) 172
BseGI GGATG 3 cut(s) 139, 157, 364
BseJI GATNNNNATC 1 cut(s) 20
BseMII CTCAG 1 cut(s) 44
BseXI GCAGC 1 cut(s) 111
BsiHKAI GWGCWC 1 cut(s) 330
BsiSI CCGG 1 cut(s) 173
Bsp1286I GDGCHC 1 cut(s) 330
Bsp13I TCCGGA 1 cut(s) 172
Bsp143I GATC 1 cut(s) 21
BspACI CCGC 2 cut(s) 11, 128
BspCNI CTCAG 1 cut(s) 43
BspEI TCCGGA 1 cut(s) 172
BspLI GGNNCC 1 cut(s) 468
BsrBI CCGCTC 1 cut(s) 128
BssMI GATC 1 cut(s) 21
BssNAI GTATAC 1 cut(s) 190
Bst1107I GTATAC 1 cut(s) 190
Bst4CI ACNGT 2 cut(s) 112, 352
BstC8I GCNNGC 3 cut(s) 38, 249, 314
BstDEI CTNAG 1 cut(s) 30
BstF5I GGATG 3 cut(s) 139, 157, 364
BstKTI GATC 1 cut(s) 24
BstMBI GATC 1 cut(s) 21
BstMWI GCNNNNNNNGC 4 cut(s) 42, 88, 253, 452
BstV1I GCAGC 1 cut(s) 111
BstZ17I GTATAC 1 cut(s) 190
BsuI GTATCC 1 cut(s) 169
BtsCI GGATG 3 cut(s) 139, 157, 364
Cac8I GCNNGC 3 cut(s) 38, 249, 314
Cfr13I GGNCC 1 cut(s) 170
Csp6I GTAC 1 cut(s) 211
CviAII CATG 1 cut(s) 253
CviJI RGCY 8 cut(s) 40, 70, 91, 184, 247, 316, 446, 486
CviKI_1 RGCY 8 cut(s) 40, 70, 91, 184, 247, 316, 446, 486
CviQI GTAC 1 cut(s) 211
DdeI CTNAG 1 cut(s) 30
DpnI GATC 1 cut(s) 23
DpnII GATC 1 cut(s) 21
Eco47I GGWCC 1 cut(s) 170
Eco57I CTGAAG 1 cut(s) 431
FaeI CATG 1 cut(s) 256
FaiI YATR 5 cut(s) 108, 190, 254, 310, 348
FatI CATG 1 cut(s) 252
FbaI TGATCA 1 cut(s) 21
FblI GTMKAC 1 cut(s) 189
Fnu4HI GCNGC 1 cut(s) 100
FokI GGATG 3 cut(s) 146, 164, 371
Fsp4HI GCNGC 1 cut(s) 100
FspBI CTAG 1 cut(s) 483
GluI GCNGC 1 cut(s) 100
HapII CCGG 1 cut(s) 173
Hin1II CATG 1 cut(s) 256
HinfI GANTC 2 cut(s) 158, 493
HpaII CCGG 1 cut(s) 173
HphI GGTGA 2 cut(s) 25, 31
Hpy166II GTNNAC 1 cut(s) 190
Hpy188I TCNGA 2 cut(s) 238, 411
Hpy188III TCNNGA 3 cut(s) 149, 173, 301
Hpy8I GTNNAC 1 cut(s) 190
HpyAV CCTTC 1 cut(s) 406
HpyCH4III ACNGT 2 cut(s) 112, 352
HpyCH4V TGCA 2 cut(s) 203, 346
HpyF10VI GCNNNNNNNGC 4 cut(s) 42, 88, 253, 452
HpyF3I CTNAG 1 cut(s) 30
Hsp92II CATG 1 cut(s) 256
Kpn2I TCCGGA 1 cut(s) 172
Ksp22I TGATCA 1 cut(s) 21
Kzo9I GATC 1 cut(s) 21
LmnI GCTCC 1 cut(s) 88
LpnPI CCDG 7 cut(s) 17, 71, 84, 134, 186, 371, 472
Lsp1109I GCAGC 1 cut(s) 111
MaeI CTAG 1 cut(s) 483
MalI GATC 1 cut(s) 23
MbiI CCGCTC 1 cut(s) 128
MboI GATC 1 cut(s) 21
MboII GAAGA 1 cut(s) 434
MhlI GDGCHC 1 cut(s) 330
MluCI AATT 3 cut(s) 62, 142, 331
MlyI GAGTC 1 cut(s) 167
MnlI CCTC 4 cut(s) 51, 124, 368, 483
MroI TCCGGA 1 cut(s) 172
MspI CCGG 1 cut(s) 173
MwoI GCNNNNNNNGC 4 cut(s) 42, 88, 253, 452
NdeII GATC 1 cut(s) 21
NlaIII CATG 1 cut(s) 256
NlaIV GGNNCC 1 cut(s) 468
NmeAIII GCCGAG 1 cut(s) 160
PkrI GCNGC 1 cut(s) 101
PleI GAGTC 1 cut(s) 166
PpsI GAGTC 1 cut(s) 166
PspN4I GGNNCC 1 cut(s) 468
PspPI GGNCC 1 cut(s) 170
RsaI GTAC 1 cut(s) 212
RsaNI GTAC 1 cut(s) 211
SatI GCNGC 1 cut(s) 100
Sau3AI GATC 1 cut(s) 21
Sau96I GGNCC 1 cut(s) 170
SchI GAGTC 1 cut(s) 167
SduI GDGCHC 1 cut(s) 330
SetI ASST 7 cut(s) 93, 249, 318, 379, 437, 448, 488
SinI GGWCC 1 cut(s) 170
Sse9I AATT 3 cut(s) 62, 142, 331
SsiI CCGC 2 cut(s) 11, 128
SspMI CTAG 1 cut(s) 483
TaaI ACNGT 2 cut(s) 112, 352
TaqI TCGA 3 cut(s) 228, 258, 496
TasI AATT 3 cut(s) 62, 142, 331
TatI WGTACW 1 cut(s) 210
TseI GCWGC 1 cut(s) 99
TspDTI ATGAA 1 cut(s) 450
VpaK11BI GGWCC 1 cut(s) 170
XapI RAATTY 1 cut(s) 62
XmiI GTMKAC 1 cut(s) 189
XspI CTAG 1 cut(s) 483
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.