Rorug02G0100800

Belongs to the adaptor complexes small subunit family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0009137
Physical Location & Seq
Reverse (-)
8577951 .. 8578316
366 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0100800.1

Sequence Viewer

Length: 366 bp
ATGGACCGCCGCGTCCGGCTCGCCGCCCACACCGCCATTCAATTCTACGACATGCAGGACCGGCTCAGATACGACCGGCCCAGCAAGGCCGTCGATTGGCTCATCAAGAAATCCAAGGCCGCAATCGACGAGCTCGACGAGCTTCCGCCGTGGAACCCGAACTCAATTTTTGTTCAGACAACATCTTCTCTGACGGTGGGGATATCCGCCGCGCAGGACAAGCAGAACGCGAGCCTCCATTTCTCGATGGTAGAGGCTCTGAGTTCTTTGTCTGCTAATCGGCGAGGCGCAATGGTGGGTAGCAACGGAGTGGCAGAGCTGGTGAATCAGAACAGCTCGAATTTTCTACAGGCGAGGATAGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04142 map04142
Pfam Domains
Protein Families
Clat_adaptor_s

Protein Analysis

121

Amino Acids

13.45

Weight (kDa)

9.22

Isoelectric Point (pI)

32.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCP PF03634 2 - 78 5.7e-19 TCP family transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 11
AccII CGCG 3 cut(s) 12, 212, 230
AciI CCGC 8 cut(s) 7, 10, 24, 33, 120, 146, 207, 210
AcsI RAATTY 1 cut(s) 340
AfiI CCNNNNNNNGG 1 cut(s) 96
AgsI TTSAA 1 cut(s) 41
AluBI AGCT 4 cut(s) 133, 142, 319, 336
AluI AGCT 4 cut(s) 133, 142, 319, 336
Alw21I GWGCWC 1 cut(s) 135
AoxI GGCC 3 cut(s) 77, 87, 117
ApoI RAATTY 1 cut(s) 340
AspLEI GCGC 2 cut(s) 214, 290
AspS9I GGNCC 3 cut(s) 4, 58, 78
AsuHPI GGTGA 1 cut(s) 334
AvaII GGWCC 2 cut(s) 4, 58
BanII GRGCYC 1 cut(s) 135
Bbv12I GWGCWC 1 cut(s) 135
BccI CCATC 1 cut(s) 241
BceAI ACGGC 2 cut(s) 74, 133
BcgI CGANNNNNNTGC 2 cut(s) 73, 107
BfmI CTRYAG 1 cut(s) 347
BisI GCNGC 4 cut(s) 10, 24, 120, 210
BlsI GCNGC 4 cut(s) 11, 25, 121, 211
Bme18I GGWCC 2 cut(s) 4, 58
BmgT120I GGNCC 3 cut(s) 4, 58, 78
BmiI GGNNCC 1 cut(s) 155
BsaJI CCNNGG 2 cut(s) 114, 149
Bsc4I CCNNNNNNNGG 1 cut(s) 96
Bse118I RCCGGY 2 cut(s) 60, 75
Bse3DI GCAATG 1 cut(s) 297
BseDI CCNNGG 2 cut(s) 114, 149
BseLI CCNNNNNNNGG 1 cut(s) 96
BseMI GCAATG 1 cut(s) 297
BseMII CTCAG 2 cut(s) 79, 251
BseYI CCCAGC 1 cut(s) 80
Bsh1236I CGCG 3 cut(s) 12, 212, 230
Bsh1285I CGRYCG 1 cut(s) 76
BshFI GGCC 3 cut(s) 79, 89, 119
BsiEI CGRYCG 1 cut(s) 76
BsiHKAI GWGCWC 1 cut(s) 135
BsiSI CCGG 3 cut(s) 16, 61, 76
BslI CCNNNNNNNGG 1 cut(s) 96
BsnI GGCC 3 cut(s) 79, 89, 119
Bsp1286I GDGCHC 1 cut(s) 135
BspACI CCGC 8 cut(s) 7, 10, 24, 33, 120, 146, 207, 210
BspANI GGCC 3 cut(s) 79, 89, 119
BspCNI CTCAG 2 cut(s) 78, 252
BspFNI CGCG 3 cut(s) 12, 212, 230
BspLI GGNNCC 1 cut(s) 155
BsrDI GCAATG 1 cut(s) 297
BsrFI RCCGGY 2 cut(s) 60, 75
BssAI RCCGGY 2 cut(s) 60, 75
BssECI CCNNGG 2 cut(s) 114, 149
BssT1I CCWWGG 1 cut(s) 114
Bst4CI ACNGT 1 cut(s) 196
BstC8I GCNNGC 2 cut(s) 21, 232
BstDEI CTNAG 2 cut(s) 65, 260
BstDSI CCRYGG 1 cut(s) 149
BstFNI CGCG 3 cut(s) 12, 212, 230
BstHHI GCGC 2 cut(s) 214, 290
BstMCI CGRYCG 1 cut(s) 76
BstMWI GCNNNNNNNGC 4 cut(s) 32, 61, 139, 220
BstNSI RCATGY 1 cut(s) 55
BstSFI CTRYAG 1 cut(s) 347
BstUI CGCG 3 cut(s) 12, 212, 230
BsuRI GGCC 3 cut(s) 79, 89, 119
BtgI CCRYGG 1 cut(s) 149
Cac8I GCNNGC 2 cut(s) 21, 232
CfoI GCGC 2 cut(s) 214, 290
Cfr10I RCCGGY 2 cut(s) 60, 75
Cfr13I GGNCC 3 cut(s) 4, 58, 78
CviAII CATG 1 cut(s) 52
DdeI CTNAG 2 cut(s) 65, 260
DrdI GACNNNNNNGTC 1 cut(s) 11
DseDI GACNNNNNNGTC 1 cut(s) 11
EciI GGCGGA 2 cut(s) 135, 196
Ecl136II GAGCTC 1 cut(s) 133
Eco130I CCWWGG 1 cut(s) 114
Eco24I GRGCYC 1 cut(s) 135
Eco32I GATATC 1 cut(s) 204
Eco47I GGWCC 2 cut(s) 4, 58
Eco53kI GAGCTC 1 cut(s) 133
EcoICRI GAGCTC 1 cut(s) 133
EcoRV GATATC 1 cut(s) 204
EcoT14I CCWWGG 1 cut(s) 114
EcoT38I GRGCYC 1 cut(s) 135
ErhI CCWWGG 1 cut(s) 114
FaeI CATG 1 cut(s) 55
FaiI YATR 1 cut(s) 53
FatI CATG 1 cut(s) 51
Fnu4HI GCNGC 4 cut(s) 10, 24, 120, 210
FriOI GRGCYC 1 cut(s) 135
Fsp4HI GCNGC 4 cut(s) 10, 24, 120, 210
GlaI GCGC 2 cut(s) 213, 289
GluI GCNGC 4 cut(s) 10, 24, 120, 210
GsaI CCCAGC 1 cut(s) 84
HaeIII GGCC 3 cut(s) 79, 89, 119
HapII CCGG 3 cut(s) 16, 61, 76
HhaI GCGC 2 cut(s) 214, 290
Hin1II CATG 1 cut(s) 55
Hin6I GCGC 2 cut(s) 212, 288
HinP1I GCGC 2 cut(s) 212, 288
HinfI GANTC 1 cut(s) 325
HpaII CCGG 3 cut(s) 16, 61, 76
HphI GGTGA 1 cut(s) 334
Hpy188I TCNGA 5 cut(s) 68, 177, 192, 261, 330
Hpy188III TCNNGA 2 cut(s) 106, 244
Hpy99I CGWCG 3 cut(s) 95, 131, 140
HpyCH4III ACNGT 1 cut(s) 196
HpyCH4V TGCA 1 cut(s) 55
HpyF10VI GCNNNNNNNGC 4 cut(s) 32, 61, 139, 220
HpyF3I CTNAG 2 cut(s) 65, 260
Hsp92II CATG 1 cut(s) 55
HspAI GCGC 2 cut(s) 212, 288
LpnPI CCDG 8 cut(s) 29, 41, 74, 89, 94, 200, 305, 335
MboII GAAGA 1 cut(s) 177
MhlI GDGCHC 1 cut(s) 135
MluCI AATT 3 cut(s) 41, 165, 340
MnlI CCTC 4 cut(s) 245, 247, 278, 348
MspI CCGG 3 cut(s) 16, 61, 76
MvnI CGCG 3 cut(s) 12, 212, 230
MwoI GCNNNNNNNGC 4 cut(s) 32, 61, 139, 220
NlaIII CATG 1 cut(s) 55
NlaIV GGNNCC 1 cut(s) 155
NspI RCATGY 1 cut(s) 55
PcsI WCGNNNNNNNCGW 2 cut(s) 132, 135
PfeI GAWTC 1 cut(s) 325
PkrI GCNGC 4 cut(s) 11, 25, 121, 211
Psp124BI GAGCTC 1 cut(s) 135
PspFI CCCAGC 1 cut(s) 80
PspN4I GGNNCC 1 cut(s) 155
PspPI GGNCC 3 cut(s) 4, 58, 78
SacI GAGCTC 1 cut(s) 135
SatI GCNGC 4 cut(s) 10, 24, 120, 210
Sau96I GGNCC 3 cut(s) 4, 58, 78
SduI GDGCHC 1 cut(s) 135
SetI ASST 4 cut(s) 135, 144, 321, 338
SfcI CTRYAG 1 cut(s) 347
SinI GGWCC 2 cut(s) 4, 58
Sse9I AATT 3 cut(s) 41, 165, 340
SsiI CCGC 8 cut(s) 7, 10, 24, 33, 120, 146, 207, 210
SstI GAGCTC 1 cut(s) 135
StyI CCWWGG 1 cut(s) 114
TaaI ACNGT 1 cut(s) 196
TaqI TCGA 5 cut(s) 93, 126, 135, 245, 338
TasI AATT 3 cut(s) 41, 165, 340
TauI GCSGC 4 cut(s) 12, 26, 122, 212
TfiI GAWTC 1 cut(s) 325
TspGWI ACGGA 1 cut(s) 321
VpaK11BI GGWCC 2 cut(s) 4, 58
XapI RAATTY 1 cut(s) 340
XceI RCATGY 1 cut(s) 55
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.