Rroxscaffold_5G00363160

Belongs to the adaptor complexes small subunit family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0009137
Physical Location & Seq
Reverse (-)
44267040 .. 44267477
438 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00363160.1

Sequence Viewer

Length: 438 bp
ATGATACGAGCAGTGATAGTGATAAATACTCGGGGCAACCCTCGCCTTGCTAAGTTCTACGAATTTCAGCTCGTGGAGAAGCAACAGGAGCTAATACACAGCGTCTATGGAGTTTTGAGCAGTAGAGCTGAGAATGTGAGCAATTTCCTGGATGCGGAATCTATTTTTGGTCCGGACACTCGGCTTGTGTACAAGCATTTTGCAACTTTGTACTTTGTCTTTGTTTTCGATAGTTCTGAAAACGAGCTTGCCATGCTCGACTTGATACAAGTTTTTGTGGAAACATTGGACAAATGCTTCAAGAATGTATGCAAGCTTGATGTGGTGCTCAATTACAGCAAGTTGCATACTGTATTAGATGAGATTATTTTTGGAGGTCAAGTGCTGGAAACAAGTTCCACCGAAGTTCGAAGGCAATCGAAGAAATCTCGAAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04142 map04142
Pfam Domains
Protein Families
Clat_adaptor_s

Protein Analysis

145

Amino Acids

16.68

Weight (kDa)

6.3

Isoelectric Point (pI)

30.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Clat_adaptor_s PF01217 1 - 137 1.8e-43 Clathrin adaptor complex small chain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 172
AciI CCGC 1 cut(s) 155
AcsI RAATTY 1 cut(s) 62
AfaI GTAC 2 cut(s) 191, 212
AfiI CCNNNNNNNGG 1 cut(s) 154
AgsI TTSAA 1 cut(s) 301
AjnI CCWGG 1 cut(s) 147
AjuI GAANNNNNNNTTGG 2 cut(s) 150, 182
AluBI AGCT 5 cut(s) 70, 91, 128, 247, 316
AluI AGCT 5 cut(s) 70, 91, 128, 247, 316
Alw21I GWGCWC 1 cut(s) 330
Ama87I CYCGRG 1 cut(s) 30
Aor13HI TCCGGA 1 cut(s) 172
ApoI RAATTY 1 cut(s) 62
AspS9I GGNCC 1 cut(s) 170
AsuII TTCGAA 1 cut(s) 409
AvaI CYCGRG 1 cut(s) 30
AvaII GGWCC 1 cut(s) 170
BauI CACGAG 1 cut(s) 71
Bbv12I GWGCWC 1 cut(s) 330
BciT130I CCWGG 1 cut(s) 149
Bme1390I CCNGG 1 cut(s) 149
Bme18I GGWCC 1 cut(s) 170
BmeT110I CYCGRG 1 cut(s) 30
BmgT120I GGNCC 1 cut(s) 170
BmrFI CCNGG 1 cut(s) 149
BmsI GCATC 1 cut(s) 142
Bpu14I TTCGAA 1 cut(s) 409
BsaWI WCCGGW 1 cut(s) 172
BsaXI ACNNNNNCTCC 2 cut(s) 366, 396
Bsc4I CCNNNNNNNGG 1 cut(s) 154
BseAI TCCGGA 1 cut(s) 172
BseBI CCWGG 1 cut(s) 149
BseGI GGATG 1 cut(s) 157
BseLI CCNNNNNNNGG 1 cut(s) 154
BseMII CTCAG 1 cut(s) 120
BsiHKAI GWGCWC 1 cut(s) 330
BsiHKCI CYCGRG 1 cut(s) 30
BsiSI CCGG 1 cut(s) 173
BslI CCNNNNNNNGG 1 cut(s) 154
BsoBI CYCGRG 1 cut(s) 30
Bsp119I TTCGAA 1 cut(s) 409
Bsp1286I GDGCHC 1 cut(s) 330
Bsp13I TCCGGA 1 cut(s) 172
Bsp1407I TGTACA 1 cut(s) 189
BspACI CCGC 1 cut(s) 155
BspCNI CTCAG 1 cut(s) 121
BspEI TCCGGA 1 cut(s) 172
BspT104I TTCGAA 1 cut(s) 409
BsrGI TGTACA 1 cut(s) 189
BssSI CACGAG 1 cut(s) 71
Bst2BI CACGAG 1 cut(s) 71
Bst2UI CCWGG 1 cut(s) 149
Bst4CI ACNGT 1 cut(s) 352
BstAUI TGTACA 1 cut(s) 189
BstBI TTCGAA 1 cut(s) 409
BstC8I GCNNGC 2 cut(s) 249, 314
BstDEI CTNAG 2 cut(s) 51, 129
BstF5I GGATG 1 cut(s) 157
BstMWI GCNNNNNNNGC 3 cut(s) 42, 88, 253
BstNI CCWGG 1 cut(s) 149
BstSCI CCNGG 1 cut(s) 147
BtsCI GGATG 1 cut(s) 157
BtsI GCAGTG 1 cut(s) 18
BtsIMutI CAGTG 1 cut(s) 18
Cac8I GCNNGC 2 cut(s) 249, 314
Cfr13I GGNCC 1 cut(s) 170
CseI GACGC 1 cut(s) 91
Csp6I GTAC 2 cut(s) 190, 211
CviAII CATG 1 cut(s) 253
CviJI RGCY 6 cut(s) 70, 91, 128, 184, 247, 316
CviKI_1 RGCY 6 cut(s) 70, 91, 128, 184, 247, 316
CviQI GTAC 2 cut(s) 190, 211
DdeI CTNAG 2 cut(s) 51, 129
Eco47I GGWCC 1 cut(s) 170
Eco88I CYCGRG 1 cut(s) 30
EcoRII CCWGG 1 cut(s) 147
FaeI CATG 1 cut(s) 256
FaiI YATR 4 cut(s) 108, 254, 310, 348
FatI CATG 1 cut(s) 252
FokI GGATG 1 cut(s) 164
HapII CCGG 1 cut(s) 173
HgaI GACGC 1 cut(s) 91
Hin1II CATG 1 cut(s) 256
HindIII AAGCTT 1 cut(s) 314
HinfI GANTC 1 cut(s) 158
HpaII CCGG 1 cut(s) 173
Hpy166II GTNNAC 1 cut(s) 190
Hpy188I TCNGA 1 cut(s) 238
Hpy188III TCNNGA 3 cut(s) 173, 301, 429
Hpy8I GTNNAC 1 cut(s) 190
HpyAV CCTTC 1 cut(s) 405
HpyCH4III ACNGT 1 cut(s) 352
HpyCH4V TGCA 3 cut(s) 203, 312, 346
HpyF10VI GCNNNNNNNGC 3 cut(s) 42, 88, 253
HpyF3I CTNAG 2 cut(s) 51, 129
Hsp92II CATG 1 cut(s) 256
Kpn2I TCCGGA 1 cut(s) 172
LmnI GCTCC 1 cut(s) 88
LpnPI CCDG 5 cut(s) 71, 134, 161, 186, 371
LweI GCATC 1 cut(s) 142
MboII GAAGA 1 cut(s) 433
MhlI GDGCHC 1 cut(s) 330
MluCI AATT 3 cut(s) 62, 142, 331
MnlI CCTC 2 cut(s) 51, 368
MroI TCCGGA 1 cut(s) 172
MspI CCGG 1 cut(s) 173
MspR9I CCNGG 1 cut(s) 149
MvaI CCWGG 1 cut(s) 149
MwoI GCNNNNNNNGC 3 cut(s) 42, 88, 253
NlaIII CATG 1 cut(s) 256
NmeAIII GCCGAG 1 cut(s) 160
NspV TTCGAA 1 cut(s) 409
PfeI GAWTC 1 cut(s) 158
PfoI TCCNGGA 1 cut(s) 147
Psp6I CCWGG 1 cut(s) 147
PspGI CCWGG 1 cut(s) 147
PspPI GGNCC 1 cut(s) 170
RsaI GTAC 2 cut(s) 191, 212
RsaNI GTAC 2 cut(s) 190, 211
Sau96I GGNCC 1 cut(s) 170
ScrFI CCNGG 1 cut(s) 149
SduI GDGCHC 1 cut(s) 330
SetI ASST 6 cut(s) 72, 93, 130, 249, 318, 379
SfaNI GCATC 1 cut(s) 142
SfuI TTCGAA 1 cut(s) 409
SinI GGWCC 1 cut(s) 170
Sse9I AATT 3 cut(s) 62, 142, 331
SsiI CCGC 1 cut(s) 155
StyD4I CCNGG 1 cut(s) 147
TaaI ACNGT 1 cut(s) 352
TaqI TCGA 5 cut(s) 228, 258, 409, 419, 430
TasI AATT 3 cut(s) 62, 142, 331
TatI WGTACW 2 cut(s) 189, 210
TfiI GAWTC 1 cut(s) 158
TscAI CASTG 1 cut(s) 18
TspRI CASTG 1 cut(s) 18
VpaK11BI GGWCC 1 cut(s) 170
XapI RAATTY 1 cut(s) 62
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.