Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0019613.1

Orthogroup ID

OG0009137

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 931

Gene Structure 931 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0019613.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 271 bp

atgatacgagcggtgatggtgataaatactcagggcaagcctcgccttgctaagttctacgaatttcagcctgtggagaagcaacaggagctaatacgcagcgtctatggagttttaagcagtagagctgagaatgtgagcaatttcctggatgcggagtctatttttggtccggacactcggcttgtgtacaagcattttgcaactttgtactttgtctttgttttcgatagttctgaaaacgagcttgccatgctcgacttgatacaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04142 map04142

Pfam Domains

Protein Families

Clat_adaptor_s

Protein Analysis

90

Amino Acids

10.41

Weight (kDa)

5.26

Isoelectric Point (pI)

30.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009137)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50860 AT3G50860
fragaria_vesca	FvH4_1g13290
malus_domestica	MD02G1147400.v1.1 MD15G1261700.v1.1
prunus_persica	Prupe.7G154700_v2.0.a1
pyrus_communis	pycom02g11650
rosa_chinensis	RchiOBHm_Chr2g0101121 RchiOBHm_Chr2g0101561
rosa_laevigata	RLG00000017090
rosa_multiflora	Rmu_sc0019613.1_g000001
rosa_roxburghii	Rroxscaffold_2G00141190 Rroxscaffold_5G00363160
rosa_rugosa	Rorug02G0097400 Rorug02G0100800
rosa_samantha	Rh2AG143700 Rh2AG148000 Rh2BG148800 Rh2BG153400 Rh2DG149300 Rh2DG153700
rosa_wichuraiana	Rw2G011540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	11
AccIII	TCCGGA	1 cut(s)	172
AciI	CCGC	2 cut(s)	11, 155
AcsI	RAATTY	1 cut(s)	62
AfaI	GTAC	2 cut(s)	191, 212
AfiI	CCNNNNNNNGG	1 cut(s)	154
AjnI	CCWGG	1 cut(s)	147
AluBI	AGCT	3 cut(s)	91, 128, 247
AluI	AGCT	3 cut(s)	91, 128, 247
Aor13HI	TCCGGA	1 cut(s)	172
ApeKI	GCWGC	1 cut(s)	99
ApoI	RAATTY	1 cut(s)	62
AspS9I	GGNCC	1 cut(s)	170
AsuHPI	GGTGA	2 cut(s)	25, 31
AvaII	GGWCC	1 cut(s)	170
BbvI	GCAGC	1 cut(s)	111
BccI	CCATC	1 cut(s)	10
BciT130I	CCWGG	1 cut(s)	149
BisI	GCNGC	1 cut(s)	100
BlsI	GCNGC	1 cut(s)	101
Bme1390I	CCNGG	1 cut(s)	149
Bme18I	GGWCC	1 cut(s)	170
BmgT120I	GGNCC	1 cut(s)	170
BmrFI	CCNGG	1 cut(s)	149
BmsI	GCATC	1 cut(s)	142
BsaWI	WCCGGW	1 cut(s)	172
Bsc4I	CCNNNNNNNGG	1 cut(s)	154
BseAI	TCCGGA	1 cut(s)	172
BseBI	CCWGG	1 cut(s)	149
BseGI	GGATG	1 cut(s)	157
BseLI	CCNNNNNNNGG	1 cut(s)	154
BseMII	CTCAG	2 cut(s)	44, 120
BseXI	GCAGC	1 cut(s)	111
BsiSI	CCGG	1 cut(s)	173
BslI	CCNNNNNNNGG	1 cut(s)	154
Bsp13I	TCCGGA	1 cut(s)	172
Bsp1407I	TGTACA	1 cut(s)	189
BspACI	CCGC	2 cut(s)	11, 155
BspCNI	CTCAG	2 cut(s)	43, 121
BspEI	TCCGGA	1 cut(s)	172
BsrBI	CCGCTC	1 cut(s)	11
BsrGI	TGTACA	1 cut(s)	189
Bst2UI	CCWGG	1 cut(s)	149
BstAUI	TGTACA	1 cut(s)	189
BstC8I	GCNNGC	2 cut(s)	38, 249
BstDEI	CTNAG	3 cut(s)	30, 51, 129
BstF5I	GGATG	1 cut(s)	157
BstMWI	GCNNNNNNNGC	3 cut(s)	42, 88, 253
BstNI	CCWGG	1 cut(s)	149
BstSCI	CCNGG	1 cut(s)	147
BstV1I	GCAGC	1 cut(s)	111
BtsCI	GGATG	1 cut(s)	157
Cac8I	GCNNGC	2 cut(s)	38, 249
Cfr13I	GGNCC	1 cut(s)	170
CseI	GACGC	1 cut(s)	91
Csp6I	GTAC	2 cut(s)	190, 211
CviAII	CATG	1 cut(s)	253
CviJI	RGCY	6 cut(s)	40, 70, 91, 128, 184, 247
CviKI_1	RGCY	6 cut(s)	40, 70, 91, 128, 184, 247
CviQI	GTAC	2 cut(s)	190, 211
DdeI	CTNAG	3 cut(s)	30, 51, 129
Eco47I	GGWCC	1 cut(s)	170
EcoRII	CCWGG	1 cut(s)	147
FaeI	CATG	1 cut(s)	256
FaiI	YATR	2 cut(s)	108, 254
FatI	CATG	1 cut(s)	252
Fnu4HI	GCNGC	1 cut(s)	100
FokI	GGATG	1 cut(s)	164
Fsp4HI	GCNGC	1 cut(s)	100
GluI	GCNGC	1 cut(s)	100
HapII	CCGG	1 cut(s)	173
HgaI	GACGC	1 cut(s)	91
Hin1II	CATG	1 cut(s)	256
HinfI	GANTC	1 cut(s)	158
HpaII	CCGG	1 cut(s)	173
HphI	GGTGA	2 cut(s)	25, 31
Hpy166II	GTNNAC	1 cut(s)	190
Hpy188I	TCNGA	1 cut(s)	238
Hpy188III	TCNNGA	1 cut(s)	173
Hpy8I	GTNNAC	1 cut(s)	190
HpyCH4V	TGCA	1 cut(s)	203
HpyF10VI	GCNNNNNNNGC	3 cut(s)	42, 88, 253
HpyF3I	CTNAG	3 cut(s)	30, 51, 129
Hsp92II	CATG	1 cut(s)	256
Kpn2I	TCCGGA	1 cut(s)	172
LmnI	GCTCC	1 cut(s)	88
LpnPI	CCDG	6 cut(s)	17, 71, 84, 134, 161, 186
Lsp1109I	GCAGC	1 cut(s)	111
LweI	GCATC	1 cut(s)	142
MbiI	CCGCTC	1 cut(s)	11
MluCI	AATT	2 cut(s)	62, 142
MlyI	GAGTC	1 cut(s)	167
MnlI	CCTC	1 cut(s)	51
MroI	TCCGGA	1 cut(s)	172
MseI	TTAA	1 cut(s)	116
MspI	CCGG	1 cut(s)	173
MspR9I	CCNGG	1 cut(s)	149
MvaI	CCWGG	1 cut(s)	149
MwoI	GCNNNNNNNGC	3 cut(s)	42, 88, 253
NlaIII	CATG	1 cut(s)	256
NmeAIII	GCCGAG	1 cut(s)	160
PfoI	TCCNGGA	1 cut(s)	147
PkrI	GCNGC	1 cut(s)	101
PleI	GAGTC	1 cut(s)	166
PpsI	GAGTC	1 cut(s)	166
Psp6I	CCWGG	1 cut(s)	147
PspGI	CCWGG	1 cut(s)	147
PspPI	GGNCC	1 cut(s)	170
RsaI	GTAC	2 cut(s)	191, 212
RsaNI	GTAC	2 cut(s)	190, 211
SaqAI	TTAA	1 cut(s)	116
SatI	GCNGC	1 cut(s)	100
Sau96I	GGNCC	1 cut(s)	170
SchI	GAGTC	1 cut(s)	167
ScrFI	CCNGG	1 cut(s)	149
SetI	ASST	3 cut(s)	93, 130, 249
SfaNI	GCATC	1 cut(s)	142
SinI	GGWCC	1 cut(s)	170
Sse9I	AATT	2 cut(s)	62, 142
SsiI	CCGC	2 cut(s)	11, 155
StyD4I	CCNGG	1 cut(s)	147
TaqI	TCGA	2 cut(s)	228, 258
TasI	AATT	2 cut(s)	62, 142
TatI	WGTACW	2 cut(s)	189, 210
Tru1I	TTAA	1 cut(s)	116
Tru9I	TTAA	1 cut(s)	116
TseI	GCWGC	1 cut(s)	99
VpaK11BI	GGWCC	1 cut(s)	170
XapI	RAATTY	1 cut(s)	62

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.