Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0009137

Physical Location & Seq

Genomic Coordinates Reverse (-)

8222709 .. 8224380

Gene Structure 1672 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g11650.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGATCCGATCGGTGATGGTGATAAACACGCAGGGGAAGCCTCGCCTTTCCAAGTTCTACGAATTTCAGGAACTTATACGCAGCGTCCATGGAGTGTTGTCCAGTAGAGGTGAGAATGTGAGCAATTTCGTGGATGCTGAGTCTATTTTCGGCCCGGATACTCGCCTTGTGTACAAGCACTTTGCAACTTTGTACATCGTCTTTGTATTCGATAGCTCTGAAAACGAGCTTGCCATGCTCGACCTCATACAAGTATTTGTGGAAACATTGGACAAATGCTTCAAAAATGTATGTGAGCTTGACGTGGTGATCAATTACAGCAAGATGCATACCGTATTGGATGAGATTATTTTTGGAGGTCAAGTGCTGGAAACAAGTTCAACTGAAGTTATGAAGGCCGTCGAAGAAATCTCAAGGTTAGAAGCAGCCTCAAATGCCATCTCACTGGTCCCAAAATCTGTTTCCGCCTGGCGGAGTCGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04142 map04142

Pfam Domains

Protein Families

Clat_adaptor_s

Protein Analysis

161

Amino Acids

18.09

Weight (kDa)

5.23

Isoelectric Point (pI)

33.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009137)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50860 AT3G50860
fragaria_vesca	FvH4_1g13290
malus_domestica	MD02G1147400.v1.1 MD15G1261700.v1.1
prunus_persica	Prupe.7G154700_v2.0.a1
pyrus_communis	pycom02g11650
rosa_chinensis	RchiOBHm_Chr2g0101121 RchiOBHm_Chr2g0101561
rosa_laevigata	RLG00000017090
rosa_multiflora	Rmu_sc0019613.1_g000001
rosa_roxburghii	Rroxscaffold_2G00141190 Rroxscaffold_5G00363160
rosa_rugosa	Rorug02G0097400 Rorug02G0100800
rosa_samantha	Rh2AG143700 Rh2AG148000 Rh2BG148800 Rh2BG153400 Rh2DG149300 Rh2DG153700
rosa_wichuraiana	Rw2G011540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	465, 472
AcsI	RAATTY	1 cut(s)	62
AcuI	CTGAAG	1 cut(s)	405
AfaI	GTAC	2 cut(s)	173, 194
AfiI	CCNNNNNNNGG	1 cut(s)	471
AgsI	TTSAA	2 cut(s)	283, 381
AjiI	CACGTC	1 cut(s)	304
AjnI	CCWGG	1 cut(s)	467
AjuI	GAANNNNNNNTTGG	2 cut(s)	445, 477
AluBI	AGCT	3 cut(s)	216, 229, 298
AluI	AGCT	3 cut(s)	216, 229, 298
AoxI	GGCC	2 cut(s)	151, 396
ApeKI	GCWGC	2 cut(s)	81, 425
ApoI	RAATTY	1 cut(s)	62
AspS9I	GGNCC	2 cut(s)	152, 448
AsuC2I	CCSGG	1 cut(s)	155
AsuHPI	GGTGA	4 cut(s)	25, 31, 122, 319
AvaII	GGWCC	1 cut(s)	448
BbvI	GCAGC	2 cut(s)	93, 437
BccI	CCATC	2 cut(s)	10, 446
BceAI	ACGGC	1 cut(s)	383
BciT130I	CCWGG	1 cut(s)	469
BciVI	GTATCC	1 cut(s)	151
BclI	TGATCA	1 cut(s)	309
BcnI	CCSGG	1 cut(s)	155
BfuI	GTATCC	1 cut(s)	151
BisI	GCNGC	2 cut(s)	82, 426
BlsI	GCNGC	2 cut(s)	83, 427
Bme1390I	CCNGG	2 cut(s)	155, 469
Bme18I	GGWCC	1 cut(s)	448
BmgBI	CACGTC	1 cut(s)	304
BmgT120I	GGNCC	2 cut(s)	152, 448
BmiI	GGNNCC	1 cut(s)	450
BmrFI	CCNGG	2 cut(s)	155, 469
BmsI	GCATC	2 cut(s)	124, 315
BpuEI	CTTGAG	1 cut(s)	397
BpuMI	CCSGG	1 cut(s)	155
BsaJI	CCNNGG	1 cut(s)	88
BsaXI	ACNNNNNCTCC	2 cut(s)	348, 378
Bsc4I	CCNNNNNNNGG	1 cut(s)	471
Bse1I	ACTGG	2 cut(s)	102, 450
BseBI	CCWGG	1 cut(s)	469
BseDI	CCNNGG	1 cut(s)	88
BseGI	GGATG	2 cut(s)	139, 346
BseLI	CCNNNNNNNGG	1 cut(s)	471
BseMII	CTCAG	1 cut(s)	129
BseNI	ACTGG	2 cut(s)	102, 450
BseXI	GCAGC	2 cut(s)	93, 437
Bsh1285I	CGRYCG	1 cut(s)	11
BshFI	GGCC	2 cut(s)	153, 398
BsiEI	CGRYCG	1 cut(s)	11
BsiSI	CCGG	1 cut(s)	155
BslFI	GGGAC	1 cut(s)	434
BslI	CCNNNNNNNGG	1 cut(s)	471
BsmFI	GGGAC	1 cut(s)	434
BsnI	GGCC	2 cut(s)	153, 398
Bsp1407I	TGTACA	2 cut(s)	171, 192
Bsp143I	GATC	3 cut(s)	3, 8, 309
Bsp19I	CCATGG	1 cut(s)	88
BspACI	CCGC	2 cut(s)	465, 472
BspANI	GGCC	2 cut(s)	153, 398
BspCNI	CTCAG	1 cut(s)	130
BspLI	GGNNCC	1 cut(s)	450
BsrGI	TGTACA	2 cut(s)	171, 192
BsrI	ACTGG	2 cut(s)	102, 450
BssECI	CCNNGG	1 cut(s)	88
BssMI	GATC	3 cut(s)	3, 8, 309
BssT1I	CCWWGG	1 cut(s)	88
Bst2UI	CCWGG	1 cut(s)	469
Bst4CI	ACNGT	1 cut(s)	334
BstAUI	TGTACA	2 cut(s)	171, 192
BstC8I	GCNNGC	1 cut(s)	231
BstDEI	CTNAG	1 cut(s)	138
BstDSI	CCRYGG	1 cut(s)	88
BstF5I	GGATG	2 cut(s)	139, 346
BstKTI	GATC	3 cut(s)	6, 11, 312
BstMBI	GATC	3 cut(s)	3, 8, 309
BstMCI	CGRYCG	1 cut(s)	11
BstMWI	GCNNNNNNNGC	3 cut(s)	37, 235, 434
BstNI	CCWGG	1 cut(s)	469
BstSCI	CCNGG	2 cut(s)	153, 467
BstV1I	GCAGC	2 cut(s)	93, 437
BstXI	CCANNNNNNTGG	1 cut(s)	445
BsuI	GTATCC	1 cut(s)	151
BsuRI	GGCC	2 cut(s)	153, 398
BtgI	CCRYGG	1 cut(s)	88
BtrI	CACGTC	1 cut(s)	304
BtsCI	GGATG	2 cut(s)	139, 346
BtsIMutI	CAGTG	1 cut(s)	443
Cac8I	GCNNGC	1 cut(s)	231
Cfr13I	GGNCC	2 cut(s)	152, 448
CseI	GACGC	1 cut(s)	73
Csp6I	GTAC	2 cut(s)	172, 193
CviAII	CATG	2 cut(s)	89, 235
CviJI	RGCY	7 cut(s)	40, 153, 216, 229, 298, 398, 428
CviKI_1	RGCY	7 cut(s)	40, 153, 216, 229, 298, 398, 428
CviQI	GTAC	2 cut(s)	172, 193
DdeI	CTNAG	1 cut(s)	138
DpnI	GATC	3 cut(s)	5, 10, 311
DpnII	GATC	3 cut(s)	3, 8, 309
EciI	GGCGGA	1 cut(s)	454
Eco130I	CCWWGG	1 cut(s)	88
Eco47I	GGWCC	1 cut(s)	448
Eco57I	CTGAAG	1 cut(s)	405
EcoRII	CCWGG	1 cut(s)	467
EcoT14I	CCWWGG	1 cut(s)	88
EcoT22I	ATGCAT	1 cut(s)	330
ErhI	CCWWGG	1 cut(s)	88
FaeI	CATG	2 cut(s)	92, 238
FaiI	YATR	7 cut(s)	77, 90, 236, 248, 292, 330, 392
FaqI	GGGAC	1 cut(s)	434
FatI	CATG	2 cut(s)	88, 234
FbaI	TGATCA	1 cut(s)	309
Fnu4HI	GCNGC	2 cut(s)	82, 426
FokI	GGATG	2 cut(s)	146, 353
Fsp4HI	GCNGC	2 cut(s)	82, 426
GluI	GCNGC	2 cut(s)	82, 426
HaeIII	GGCC	2 cut(s)	153, 398
HapII	CCGG	1 cut(s)	155
HgaI	GACGC	1 cut(s)	73
Hin1II	CATG	2 cut(s)	92, 238
HinfI	GANTC	2 cut(s)	140, 475
HpaII	CCGG	1 cut(s)	155
HphI	GGTGA	4 cut(s)	25, 31, 122, 319
Hpy166II	GTNNAC	1 cut(s)	172
Hpy188I	TCNGA	2 cut(s)	8, 220
Hpy188III	TCNNGA	1 cut(s)	68
Hpy8I	GTNNAC	1 cut(s)	172
Hpy99I	CGWCG	1 cut(s)	404
HpyAV	CCTTC	1 cut(s)	388
HpyCH4III	ACNGT	1 cut(s)	334
HpyCH4IV	ACGT	1 cut(s)	303
HpyCH4V	TGCA	2 cut(s)	185, 328
HpyF10VI	GCNNNNNNNGC	3 cut(s)	37, 235, 434
HpyF3I	CTNAG	1 cut(s)	138
HpySE526I	ACGT	1 cut(s)	303
Hsp92II	CATG	2 cut(s)	92, 238
Ksp22I	TGATCA	1 cut(s)	309
Kzo9I	GATC	3 cut(s)	3, 8, 309
LpnPI	CCDG	7 cut(s)	17, 53, 115, 168, 353, 431, 454
Lsp1109I	GCAGC	2 cut(s)	93, 437
LweI	GCATC	2 cut(s)	124, 315
MaeII	ACGT	1 cut(s)	303
MalI	GATC	3 cut(s)	5, 10, 311
MboI	GATC	3 cut(s)	3, 8, 309
MboII	GAAGA	1 cut(s)	416
MluCI	AATT	3 cut(s)	62, 124, 313
MlyI	GAGTC	1 cut(s)	149
MnlI	CCTC	5 cut(s)	51, 101, 254, 350, 439
Mph1103I	ATGCAT	1 cut(s)	330
MspI	CCGG	1 cut(s)	155
MspR9I	CCNGG	2 cut(s)	155, 469
MvaI	CCWGG	1 cut(s)	469
MwoI	GCNNNNNNNGC	3 cut(s)	37, 235, 434
NciI	CCSGG	1 cut(s)	155
NcoI	CCATGG	1 cut(s)	88
NdeII	GATC	3 cut(s)	3, 8, 309
NlaIII	CATG	2 cut(s)	92, 238
NlaIV	GGNNCC	1 cut(s)	450
NsiI	ATGCAT	1 cut(s)	330
PkrI	GCNGC	2 cut(s)	83, 427
Ple19I	CGATCG	1 cut(s)	11
PleI	GAGTC	1 cut(s)	148
PpsI	GAGTC	1 cut(s)	148
Psp6I	CCWGG	1 cut(s)	467
PspGI	CCWGG	1 cut(s)	467
PspN4I	GGNNCC	1 cut(s)	450
PspPI	GGNCC	2 cut(s)	152, 448
PvuI	CGATCG	1 cut(s)	11
RsaI	GTAC	2 cut(s)	173, 194
RsaNI	GTAC	2 cut(s)	172, 193
SatI	GCNGC	2 cut(s)	82, 426
Sau3AI	GATC	3 cut(s)	3, 8, 309
Sau96I	GGNCC	2 cut(s)	152, 448
SchI	GAGTC	1 cut(s)	149
ScrFI	CCNGG	2 cut(s)	155, 469
SetI	ASST	8 cut(s)	112, 218, 231, 246, 300, 306, 361, 419
SfaNI	GCATC	2 cut(s)	124, 315
SinI	GGWCC	1 cut(s)	448
SmlI	CTYRAG	1 cut(s)	412
SmoI	CTYRAG	1 cut(s)	412
Sse9I	AATT	3 cut(s)	62, 124, 313
SsiI	CCGC	2 cut(s)	465, 472
StyD4I	CCNGG	2 cut(s)	153, 467
StyI	CCWWGG	1 cut(s)	88
TaaI	ACNGT	1 cut(s)	334
TaiI	ACGT	1 cut(s)	306
TaqI	TCGA	4 cut(s)	210, 240, 402, 478
TasI	AATT	3 cut(s)	62, 124, 313
TatI	WGTACW	2 cut(s)	171, 192
TscAI	CASTG	1 cut(s)	450
TseI	GCWGC	2 cut(s)	81, 425
TspDTI	ATGAA	1 cut(s)	407
TspRI	CASTG	1 cut(s)	450
VpaK11BI	GGWCC	1 cut(s)	448
XapI	RAATTY	1 cut(s)	62
Zsp2I	ATGCAT	1 cut(s)	330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.