Rh2DG153700

Belongs to the adaptor complexes small subunit family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0009137
Physical Location & Seq
Reverse (-)
12867980 .. 12869515
1536 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG153700.1

Sequence Viewer

Length: 501 bp
ATGATACGAGCGGTGATGGTGATAAATACTCAGGGCAAGCCTCGCCTTGCTAAGTTCTACGAATTTCAGCCTGTGGAGAAGCAACAGGAGCTAATACGCAGCGTCTATGGAGTTTTGAGCAGTAGAGCTGAGAATGTGAGCAATTTCCTGGATGCGGAGTCTATTTTTGGTCCGGACACTCGGCTTGTGTACAAGCATTTTGCAACTTTGTACTTTGTCTTTGTTTTCGATAGTTCAGAAAACGAGCTTGCCATGCTCGACTTGATACAAGTTTTTGTGGAAACATTGGACAAATGCTTCAAGAACGTATGCGAGCTTGATGTGGTGCTCAATTACAGCAAGTTGCATACTGTATTGGATGAGATAATTTTTGGAGGTCAAGTGCTGGAAACGAGTTCCACCGAAGTTCTGAAGGCTGTTGAAGAAATCTCAAAGTTAGAAACAGCTTCAAACGCTATTTCATTGGTTCCAAAATCTGTTTCTAGCTGGAGGAGTCGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04142 map04142
Pfam Domains
Protein Families
Clat_adaptor_s

Protein Analysis

166

Amino Acids

18.84

Weight (kDa)

5.11

Isoelectric Point (pI)

30.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Clat_adaptor_s PF01217 1 - 146 6.6e-48 Clathrin adaptor complex small chain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 11
AccIII TCCGGA 1 cut(s) 172
AciI CCGC 2 cut(s) 11, 155
AcsI RAATTY 1 cut(s) 62
AcuI CTGAAG 1 cut(s) 431
AfaI GTAC 2 cut(s) 191, 212
AfiI CCNNNNNNNGG 1 cut(s) 154
AgsI TTSAA 3 cut(s) 301, 422, 450
AjnI CCWGG 1 cut(s) 147
AjuI GAANNNNNNNTTGG 2 cut(s) 463, 495
AluBI AGCT 6 cut(s) 91, 128, 247, 316, 446, 486
AluI AGCT 6 cut(s) 91, 128, 247, 316, 446, 486
Alw21I GWGCWC 1 cut(s) 330
Aor13HI TCCGGA 1 cut(s) 172
ApeKI GCWGC 1 cut(s) 99
ApoI RAATTY 1 cut(s) 62
AspS9I GGNCC 1 cut(s) 170
AsuHPI GGTGA 2 cut(s) 25, 31
AvaII GGWCC 1 cut(s) 170
Bbv12I GWGCWC 1 cut(s) 330
BbvI GCAGC 1 cut(s) 111
BccI CCATC 1 cut(s) 10
BciT130I CCWGG 1 cut(s) 149
BfaI CTAG 1 cut(s) 483
BisI GCNGC 1 cut(s) 100
BlsI GCNGC 1 cut(s) 101
Bme1390I CCNGG 1 cut(s) 149
Bme18I GGWCC 1 cut(s) 170
BmgT120I GGNCC 1 cut(s) 170
BmiI GGNNCC 1 cut(s) 468
BmrFI CCNGG 1 cut(s) 149
BmsI GCATC 1 cut(s) 142
BsaWI WCCGGW 1 cut(s) 172
BsaXI ACNNNNNCTCC 2 cut(s) 366, 396
Bsc4I CCNNNNNNNGG 1 cut(s) 154
BseAI TCCGGA 1 cut(s) 172
BseBI CCWGG 1 cut(s) 149
BseGI GGATG 2 cut(s) 157, 364
BseLI CCNNNNNNNGG 1 cut(s) 154
BseMII CTCAG 2 cut(s) 44, 120
BseXI GCAGC 1 cut(s) 111
BsiHKAI GWGCWC 1 cut(s) 330
BsiSI CCGG 1 cut(s) 173
BslI CCNNNNNNNGG 1 cut(s) 154
Bsp1286I GDGCHC 1 cut(s) 330
Bsp13I TCCGGA 1 cut(s) 172
Bsp1407I TGTACA 1 cut(s) 189
BspACI CCGC 2 cut(s) 11, 155
BspCNI CTCAG 2 cut(s) 43, 121
BspEI TCCGGA 1 cut(s) 172
BspLI GGNNCC 1 cut(s) 468
BsrBI CCGCTC 1 cut(s) 11
BsrGI TGTACA 1 cut(s) 189
Bst2UI CCWGG 1 cut(s) 149
Bst4CI ACNGT 1 cut(s) 352
BstAUI TGTACA 1 cut(s) 189
BstC8I GCNNGC 3 cut(s) 38, 249, 314
BstDEI CTNAG 3 cut(s) 30, 51, 129
BstF5I GGATG 2 cut(s) 157, 364
BstMWI GCNNNNNNNGC 4 cut(s) 42, 88, 253, 452
BstNI CCWGG 1 cut(s) 149
BstSCI CCNGG 1 cut(s) 147
BstV1I GCAGC 1 cut(s) 111
BtsCI GGATG 2 cut(s) 157, 364
Cac8I GCNNGC 3 cut(s) 38, 249, 314
Cfr13I GGNCC 1 cut(s) 170
CseI GACGC 1 cut(s) 91
Csp6I GTAC 2 cut(s) 190, 211
CviAII CATG 1 cut(s) 253
CviQI GTAC 2 cut(s) 190, 211
DdeI CTNAG 3 cut(s) 30, 51, 129
Eco47I GGWCC 1 cut(s) 170
Eco57I CTGAAG 1 cut(s) 431
EcoRII CCWGG 1 cut(s) 147
FaeI CATG 1 cut(s) 256
FaiI YATR 4 cut(s) 108, 254, 310, 348
FatI CATG 1 cut(s) 252
Fnu4HI GCNGC 1 cut(s) 100
FokI GGATG 2 cut(s) 164, 371
Fsp4HI GCNGC 1 cut(s) 100
FspBI CTAG 1 cut(s) 483
GluI GCNGC 1 cut(s) 100
HapII CCGG 1 cut(s) 173
HgaI GACGC 1 cut(s) 91
Hin1II CATG 1 cut(s) 256
HinfI GANTC 2 cut(s) 158, 493
HpaII CCGG 1 cut(s) 173
HphI GGTGA 2 cut(s) 25, 31
Hpy166II GTNNAC 1 cut(s) 190
Hpy188I TCNGA 2 cut(s) 238, 411
Hpy188III TCNNGA 2 cut(s) 173, 301
Hpy8I GTNNAC 1 cut(s) 190
HpyAV CCTTC 1 cut(s) 406
HpyCH4III ACNGT 1 cut(s) 352
HpyCH4IV ACGT 1 cut(s) 306
HpyCH4V TGCA 2 cut(s) 203, 346
HpyF10VI GCNNNNNNNGC 4 cut(s) 42, 88, 253, 452
HpyF3I CTNAG 3 cut(s) 30, 51, 129
HpySE526I ACGT 1 cut(s) 306
Hsp92II CATG 1 cut(s) 256
Kpn2I TCCGGA 1 cut(s) 172
LmnI GCTCC 1 cut(s) 88
LpnPI CCDG 8 cut(s) 17, 71, 84, 134, 161, 186, 371, 472
Lsp1109I GCAGC 1 cut(s) 111
LweI GCATC 1 cut(s) 142
MaeI CTAG 1 cut(s) 483
MaeII ACGT 1 cut(s) 306
MbiI CCGCTC 1 cut(s) 11
MboII GAAGA 1 cut(s) 434
MhlI GDGCHC 1 cut(s) 330
MluCI AATT 4 cut(s) 62, 142, 331, 366
MlyI GAGTC 1 cut(s) 167
MnlI CCTC 3 cut(s) 51, 368, 483
MroI TCCGGA 1 cut(s) 172
MspI CCGG 1 cut(s) 173
MspR9I CCNGG 1 cut(s) 149
MvaI CCWGG 1 cut(s) 149
MwoI GCNNNNNNNGC 4 cut(s) 42, 88, 253, 452
NlaIII CATG 1 cut(s) 256
NlaIV GGNNCC 1 cut(s) 468
NmeAIII GCCGAG 1 cut(s) 160
PfoI TCCNGGA 1 cut(s) 147
PkrI GCNGC 1 cut(s) 101
PleI GAGTC 1 cut(s) 166
PpsI GAGTC 1 cut(s) 166
Psp6I CCWGG 1 cut(s) 147
PspGI CCWGG 1 cut(s) 147
PspN4I GGNNCC 1 cut(s) 468
PspPI GGNCC 1 cut(s) 170
RsaI GTAC 2 cut(s) 191, 212
RsaNI GTAC 2 cut(s) 190, 211
SatI GCNGC 1 cut(s) 100
Sau96I GGNCC 1 cut(s) 170
SchI GAGTC 1 cut(s) 167
ScrFI CCNGG 1 cut(s) 149
SduI GDGCHC 1 cut(s) 330
SetI ASST 8 cut(s) 93, 130, 249, 309, 318, 379, 448, 488
SfaNI GCATC 1 cut(s) 142
SinI GGWCC 1 cut(s) 170
Sse9I AATT 4 cut(s) 62, 142, 331, 366
SsiI CCGC 2 cut(s) 11, 155
SspMI CTAG 1 cut(s) 483
StyD4I CCNGG 1 cut(s) 147
TaaI ACNGT 1 cut(s) 352
TaiI ACGT 1 cut(s) 309
TaqI TCGA 3 cut(s) 228, 258, 496
TasI AATT 4 cut(s) 62, 142, 331, 366
TatI WGTACW 2 cut(s) 189, 210
TseI GCWGC 1 cut(s) 99
TspDTI ATGAA 1 cut(s) 450
VpaK11BI GGWCC 1 cut(s) 170
XapI RAATTY 1 cut(s) 62
XspI CTAG 1 cut(s) 483
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.