Transcription initiation factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G36650 |
| fragaria_vesca | FvH4_1g13530 |
| malus_domestica | MD15G1265100.v1.1 |
| prunus_persica | Prupe.7G152500_v2.0.a1 |
| pyrus_communis | pycom15g23090 |
| rosa_chinensis | RchiOBHm_Chr2g0101921 |
| rosa_laevigata | RLG00000017116 |
| rosa_multiflora | Rmu_sc0010781.1_g000003 |
| rosa_roxburghii | Rroxscaffold_2G00140950 |
| rosa_rugosa | Rorug02G0103100 |
| rosa_samantha | Rh2AG151100 Rh2BG156600 Rh2CG156400 Rh2DG156700 |
| rosa_wichuraiana | Rw2G011790 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 994 |
| AatII | GACGTC | 1 cut(s) | 383 |
| Acc36I | ACCTGC | 1 cut(s) | 994 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1481 |
| AccBSI | CCGCTC | 2 cut(s) | 309, 752 |
| AccI | GTMKAC | 2 cut(s) | 377, 933 |
| AccII | CGCG | 5 cut(s) | 90, 138, 351, 371, 476 |
| AccIII | TCCGGA | 1 cut(s) | 924 |
| AclI | AACGTT | 1 cut(s) | 1143 |
| AcoI | YGGCCR | 1 cut(s) | 328 |
| AcsI | RAATTY | 1 cut(s) | 1534 |
| AcuI | CTGAAG | 3 cut(s) | 578, 653, 1014 |
| AcyI | GRCGYC | 1 cut(s) | 380 |
| AdeI | CACNNNGTG | 1 cut(s) | 72 |
| AfaI | GTAC | 3 cut(s) | 14, 644, 1275 |
| AfeI | AGCGCT | 1 cut(s) | 1267 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 84, 1127, 1439, 1481 |
| AflIII | ACRYGT | 1 cut(s) | 474 |
| AgsI | TTSAA | 5 cut(s) | 359, 533, 863, 1148, 1520 |
| AjnI | CCWGG | 6 cut(s) | 275, 558, 584, 1239, 1258, 1486 |
| AleI | CACNNNNGTG | 2 cut(s) | 392, 1228 |
| Alw21I | GWGCWC | 3 cut(s) | 77, 345, 1198 |
| Alw44I | GTGCAC | 2 cut(s) | 73, 1194 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 760 |
| Ama87I | CYCGRG | 3 cut(s) | 19, 284, 344 |
| Aor13HI | TCCGGA | 1 cut(s) | 924 |
| Aor51HI | AGCGCT | 1 cut(s) | 1267 |
| AoxI | GGCC | 4 cut(s) | 328, 561, 573, 1109 |
| ApaLI | GTGCAC | 2 cut(s) | 73, 1194 |
| ApeKI | GCWGC | 5 cut(s) | 525, 548, 836, 1268, 1509 |
| ApoI | RAATTY | 1 cut(s) | 1534 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 666 |
| AspLEI | GCGC | 5 cut(s) | 90, 105, 140, 351, 1268 |
| AspS9I | GGNCC | 7 cut(s) | 279, 469, 556, 574, 588, 1244, 1484 |
| AsuHPI | GGTGA | 3 cut(s) | 157, 253, 910 |
| AvaI | CYCGRG | 3 cut(s) | 19, 284, 344 |
| AvaII | GGWCC | 6 cut(s) | 279, 469, 556, 588, 1244, 1484 |
| BaeGI | GKGCMC | 2 cut(s) | 77, 1198 |
| BanII | GRGCYC | 4 cut(s) | 249, 291, 345, 585 |
| BarI | GAAGNNNNNNTAC | 1 cut(s) | 28 |
| BbsI | GAAGAC | 2 cut(s) | 240, 870 |
| Bbv12I | GWGCWC | 3 cut(s) | 77, 345, 1198 |
| BbvI | GCAGC | 5 cut(s) | 535, 537, 823, 1255, 1521 |
| BccI | CCATC | 2 cut(s) | 71, 979 |
| BceAI | ACGGC | 1 cut(s) | 1280 |
| BciT130I | CCWGG | 6 cut(s) | 277, 560, 586, 1241, 1260, 1488 |
| BfaI | CTAG | 4 cut(s) | 539, 848, 1337, 1371 |
| BfmI | CTRYAG | 1 cut(s) | 1269 |
| BfoI | RGCGCY | 2 cut(s) | 106, 1269 |
| BfuAI | ACCTGC | 1 cut(s) | 994 |
| BisI | GCNGC | 7 cut(s) | 526, 549, 612, 834, 837, 1269, 1510 |
| BlsI | GCNGC | 7 cut(s) | 527, 550, 613, 835, 838, 1270, 1511 |
| BmcAI | AGTACT | 1 cut(s) | 1275 |
| Bme1390I | CCNGG | 6 cut(s) | 277, 560, 586, 1241, 1260, 1488 |
| Bme18I | GGWCC | 6 cut(s) | 279, 469, 556, 588, 1244, 1484 |
| BmeT110I | CYCGRG | 3 cut(s) | 19, 284, 344 |
| BmgT120I | GGNCC | 7 cut(s) | 279, 469, 556, 574, 588, 1244, 1484 |
| BmiI | GGNNCC | 4 cut(s) | 281, 590, 1245, 1444 |
| BmrFI | CCNGG | 6 cut(s) | 277, 560, 586, 1241, 1260, 1488 |
| BmsI | GCATC | 1 cut(s) | 1543 |
| BpiI | GAAGAC | 2 cut(s) | 240, 870 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 62, 94 |
| BpmI | CTGGAG | 3 cut(s) | 719, 981, 1378 |
| BpuEI | CTTGAG | 2 cut(s) | 535, 1173 |
| Bsa29I | ATCGAT | 1 cut(s) | 429 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1042 |
| BsaHI | GRCGYC | 1 cut(s) | 380 |
| BsaJI | CCNNGG | 5 cut(s) | 249, 584, 716, 1239, 1240 |
| BsaWI | WCCGGW | 2 cut(s) | 924, 1099 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 172, 202, 293, 323 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 84, 1127, 1439, 1481 |
| Bse1I | ACTGG | 3 cut(s) | 765, 907, 1395 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1042 |
| BseAI | TCCGGA | 1 cut(s) | 924 |
| BseBI | CCWGG | 6 cut(s) | 277, 560, 586, 1241, 1260, 1488 |
| BseCI | ATCGAT | 1 cut(s) | 429 |
| BseDI | CCNNGG | 5 cut(s) | 249, 584, 716, 1239, 1240 |
| BseGI | GGATG | 2 cut(s) | 964, 1558 |
| BseJI | GATNNNNATC | 1 cut(s) | 1042 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 84, 1127, 1439, 1481 |
| BseMII | CTCAG | 5 cut(s) | 421, 638, 665, 767, 1488 |
| BseNI | ACTGG | 3 cut(s) | 765, 907, 1395 |
| BseRI | GAGGAG | 4 cut(s) | 180, 301, 355, 722 |
| BseSI | GKGCMC | 2 cut(s) | 77, 1198 |
| BseXI | GCAGC | 5 cut(s) | 535, 537, 823, 1255, 1521 |
| BseYI | CCCAGC | 1 cut(s) | 290 |
| BsgI | GTGCAG | 1 cut(s) | 787 |
| Bsh1236I | CGCG | 5 cut(s) | 90, 138, 351, 371, 476 |
| BshFI | GGCC | 4 cut(s) | 330, 563, 575, 1111 |
| BshVI | ATCGAT | 1 cut(s) | 429 |
| BsiHKAI | GWGCWC | 3 cut(s) | 77, 345, 1198 |
| BsiHKCI | CYCGRG | 3 cut(s) | 19, 284, 344 |
| BsiSI | CCGG | 3 cut(s) | 327, 925, 1100 |
| BslFI | GGGAC | 1 cut(s) | 265 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 84, 1127, 1439, 1481 |
| BsmFI | GGGAC | 1 cut(s) | 265 |
| BsnI | GGCC | 4 cut(s) | 330, 563, 575, 1111 |
| BsoBI | CYCGRG | 3 cut(s) | 19, 284, 344 |
| Bsp1286I | GDGCHC | 6 cut(s) | 77, 249, 291, 345, 585, 1198 |
| Bsp13I | TCCGGA | 1 cut(s) | 924 |
| Bsp143I | GATC | 2 cut(s) | 961, 1037 |
| BspANI | GGCC | 4 cut(s) | 330, 563, 575, 1111 |
| BspCNI | CTCAG | 5 cut(s) | 420, 637, 666, 766, 1489 |
| BspDI | ATCGAT | 1 cut(s) | 429 |
| BspEI | TCCGGA | 1 cut(s) | 924 |
| BspFNI | CGCG | 5 cut(s) | 90, 138, 351, 371, 476 |
| BspLI | GGNNCC | 4 cut(s) | 281, 590, 1245, 1444 |
| BspMAI | CTGCAG | 1 cut(s) | 1273 |
| BspMI | ACCTGC | 1 cut(s) | 994 |
| BspQI | GCTCTTC | 1 cut(s) | 93 |
| BsrBI | CCGCTC | 2 cut(s) | 309, 752 |
| BsrI | ACTGG | 3 cut(s) | 765, 907, 1395 |
| BssECI | CCNNGG | 5 cut(s) | 249, 584, 716, 1239, 1240 |
| BssMI | GATC | 2 cut(s) | 961, 1037 |
| BssNI | GRCGYC | 1 cut(s) | 380 |
| BssT1I | CCWWGG | 1 cut(s) | 716 |
| Bst2UI | CCWGG | 6 cut(s) | 277, 560, 586, 1241, 1260, 1488 |
| Bst4CI | ACNGT | 5 cut(s) | 391, 1021, 1175, 1207, 1456 |
| Bst6I | CTCTTC | 3 cut(s) | 93, 131, 1155 |
| BstACI | GRCGYC | 1 cut(s) | 380 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 81 |
| BstC8I | GCNNGC | 5 cut(s) | 86, 353, 853, 857, 882 |
| BstDEI | CTNAG | 6 cut(s) | 407, 624, 674, 753, 1497, 1502 |
| BstDSI | CCRYGG | 1 cut(s) | 249 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1437 |
| BstF5I | GGATG | 2 cut(s) | 964, 1558 |
| BstFNI | CGCG | 5 cut(s) | 90, 138, 351, 371, 476 |
| BstH2I | RGCGCY | 2 cut(s) | 106, 1269 |
| BstHHI | GCGC | 5 cut(s) | 90, 105, 140, 351, 1268 |
| BstKTI | GATC | 2 cut(s) | 964, 1040 |
| BstMBI | GATC | 2 cut(s) | 961, 1037 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 81, 548, 620, 679, 877 |
| BstNI | CCWGG | 6 cut(s) | 277, 560, 586, 1241, 1260, 1488 |
| BstSCI | CCNGG | 6 cut(s) | 275, 558, 584, 1239, 1258, 1486 |
| BstSFI | CTRYAG | 1 cut(s) | 1269 |
| BstSLI | GKGCMC | 2 cut(s) | 77, 1198 |
| BstUI | CGCG | 5 cut(s) | 90, 138, 351, 371, 476 |
| BstV1I | GCAGC | 5 cut(s) | 535, 537, 823, 1255, 1521 |
| BstV2I | GAAGAC | 2 cut(s) | 240, 870 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 394 |
| Bsu15I | ATCGAT | 1 cut(s) | 429 |
| BsuRI | GGCC | 4 cut(s) | 330, 563, 575, 1111 |
| BsuTUI | ATCGAT | 1 cut(s) | 429 |
| BtgI | CCRYGG | 1 cut(s) | 249 |
| BtsCI | GGATG | 2 cut(s) | 964, 1558 |
| BtsIMutI | CAGTG | 3 cut(s) | 1046, 1212, 1402 |
| BveI | ACCTGC | 1 cut(s) | 994 |
| Cac8I | GCNNGC | 5 cut(s) | 86, 353, 853, 857, 882 |
| CaiI | CAGNNNCTG | 1 cut(s) | 760 |
| CfoI | GCGC | 5 cut(s) | 90, 105, 140, 351, 1268 |
| Cfr13I | GGNCC | 7 cut(s) | 279, 469, 556, 574, 588, 1244, 1484 |
| ClaI | ATCGAT | 1 cut(s) | 429 |
| CseI | GACGC | 2 cut(s) | 360, 1367 |
| CsiI | ACCWGGT | 1 cut(s) | 275 |
| Csp6I | GTAC | 3 cut(s) | 13, 643, 1274 |
| CspCI | CAANNNNNGTGG | 1 cut(s) | 1528 |
| CviAII | CATG | 1 cut(s) | 1124 |
| CviQI | GTAC | 3 cut(s) | 13, 643, 1274 |
| DdeI | CTNAG | 6 cut(s) | 407, 624, 674, 753, 1497, 1502 |
| DpnI | GATC | 2 cut(s) | 963, 1039 |
| DpnII | GATC | 2 cut(s) | 961, 1037 |
| DraIII | CACNNNGTG | 1 cut(s) | 72 |
| EaeI | YGGCCR | 1 cut(s) | 328 |
| Eam1104I | CTCTTC | 3 cut(s) | 93, 131, 1155 |
| EarI | CTCTTC | 3 cut(s) | 93, 131, 1155 |
| EciI | GGCGGA | 2 cut(s) | 39, 183 |
| Ecl136II | GAGCTC | 1 cut(s) | 343 |
| Eco130I | CCWWGG | 1 cut(s) | 716 |
| Eco147I | AGGCCT | 1 cut(s) | 1111 |
| Eco24I | GRGCYC | 4 cut(s) | 249, 291, 345, 585 |
| Eco32I | GATATC | 1 cut(s) | 603 |
| Eco47I | GGWCC | 6 cut(s) | 279, 469, 556, 588, 1244, 1484 |
| Eco47III | AGCGCT | 1 cut(s) | 1267 |
| Eco53kI | GAGCTC | 1 cut(s) | 343 |
| Eco57I | CTGAAG | 3 cut(s) | 578, 653, 1014 |
| Eco88I | CYCGRG | 3 cut(s) | 19, 284, 344 |
| EcoICRI | GAGCTC | 1 cut(s) | 343 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1437 |
| EcoO109I | RGGNCCY | 1 cut(s) | 588 |
| EcoRII | CCWGG | 6 cut(s) | 275, 558, 584, 1239, 1258, 1486 |
| EcoRV | GATATC | 1 cut(s) | 603 |
| EcoT14I | CCWWGG | 1 cut(s) | 716 |
| EcoT38I | GRGCYC | 4 cut(s) | 249, 291, 345, 585 |
| ErhI | CCWWGG | 1 cut(s) | 716 |
| FaeI | CATG | 1 cut(s) | 1127 |
| FaqI | GGGAC | 1 cut(s) | 265 |
| FatI | CATG | 1 cut(s) | 1123 |
| FauI | CCCGC | 2 cut(s) | 77, 1159 |
| FauNDI | CATATG | 1 cut(s) | 711 |
| FblI | GTMKAC | 2 cut(s) | 377, 933 |
| Fnu4HI | GCNGC | 7 cut(s) | 526, 549, 612, 834, 837, 1269, 1510 |
| FokI | GGATG | 1 cut(s) | 971 |
| FriOI | GRGCYC | 4 cut(s) | 249, 291, 345, 585 |
| Fsp4HI | GCNGC | 7 cut(s) | 526, 549, 612, 834, 837, 1269, 1510 |
| FspBI | CTAG | 4 cut(s) | 539, 848, 1337, 1371 |
| GlaI | GCGC | 5 cut(s) | 89, 104, 139, 350, 1267 |
| GluI | GCNGC | 7 cut(s) | 526, 549, 612, 834, 837, 1269, 1510 |
| GsaI | CCCAGC | 1 cut(s) | 294 |
| GsuI | CTGGAG | 3 cut(s) | 719, 981, 1378 |
| HaeII | RGCGCY | 2 cut(s) | 106, 1269 |
| HaeIII | GGCC | 4 cut(s) | 330, 563, 575, 1111 |
| HapII | CCGG | 3 cut(s) | 327, 925, 1100 |
| HgaI | GACGC | 2 cut(s) | 360, 1367 |
| HhaI | GCGC | 5 cut(s) | 90, 105, 140, 351, 1268 |
| Hin1I | GRCGYC | 1 cut(s) | 380 |
| Hin1II | CATG | 1 cut(s) | 1127 |
| Hin6I | GCGC | 5 cut(s) | 88, 103, 138, 349, 1266 |
| HinP1I | GCGC | 5 cut(s) | 88, 103, 138, 349, 1266 |
| HincII | GTYRAC | 1 cut(s) | 378 |
| HindII | GTYRAC | 1 cut(s) | 378 |
| HindIII | AAGCTT | 1 cut(s) | 1478 |
| HinfI | GANTC | 3 cut(s) | 224, 520, 676 |
| HpaII | CCGG | 3 cut(s) | 327, 925, 1100 |
| HphI | GGTGA | 3 cut(s) | 157, 253, 910 |
| Hpy166II | GTNNAC | 5 cut(s) | 75, 378, 934, 1196, 1406 |
| Hpy188I | TCNGA | 6 cut(s) | 172, 229, 469, 627, 756, 1351 |
| Hpy188III | TCNNGA | 7 cut(s) | 218, 569, 596, 649, 925, 998, 1032 |
| Hpy8I | GTNNAC | 5 cut(s) | 75, 378, 934, 1196, 1406 |
| Hpy99I | CGWCG | 7 cut(s) | 60, 212, 215, 376, 379, 382, 395 |
| HpyAV | CCTTC | 6 cut(s) | 277, 331, 602, 622, 1121, 1443 |
| HpyCH4III | ACNGT | 5 cut(s) | 391, 1021, 1175, 1207, 1456 |
| HpyCH4IV | ACGT | 4 cut(s) | 213, 380, 746, 1143 |
| HpyCH4V | TGCA | 6 cut(s) | 75, 421, 726, 804, 1196, 1271 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 81, 548, 620, 679, 877 |
| HpyF3I | CTNAG | 6 cut(s) | 407, 624, 674, 753, 1497, 1502 |
| HpySE526I | ACGT | 4 cut(s) | 213, 380, 746, 1143 |
| Hsp92I | GRCGYC | 1 cut(s) | 380 |
| Hsp92II | CATG | 1 cut(s) | 1127 |
| HspAI | GCGC | 5 cut(s) | 88, 103, 138, 349, 1266 |
| Kpn2I | TCCGGA | 1 cut(s) | 924 |
| Kzo9I | GATC | 2 cut(s) | 961, 1037 |
| LguI | GCTCTTC | 1 cut(s) | 93 |
| LmnI | GCTCC | 2 cut(s) | 314, 506 |
| Lsp1109I | GCAGC | 5 cut(s) | 535, 537, 823, 1255, 1521 |
| LweI | GCATC | 1 cut(s) | 1543 |
| MabI | ACCWGGT | 1 cut(s) | 275 |
| MaeI | CTAG | 4 cut(s) | 539, 848, 1337, 1371 |
| MaeII | ACGT | 4 cut(s) | 213, 380, 746, 1143 |
| MaeIII | GTNAC | 3 cut(s) | 163, 898, 916 |
| MalI | GATC | 2 cut(s) | 963, 1039 |
| MbiI | CCGCTC | 2 cut(s) | 309, 752 |
| MboI | GATC | 2 cut(s) | 961, 1037 |
| MboII | GAAGA | 8 cut(s) | 110, 118, 242, 245, 875, 1032, 1169, 1172 |
| MfeI | CAATTG | 1 cut(s) | 606 |
| MhlI | GDGCHC | 6 cut(s) | 77, 249, 291, 345, 585, 1198 |
| MluCI | AATT | 8 cut(s) | 113, 606, 633, 694, 952, 976, 1183, 1534 |
| MluI | ACGCGT | 1 cut(s) | 474 |
| MlyI | GAGTC | 2 cut(s) | 218, 685 |
| MmeI | TCCRAC | 2 cut(s) | 195, 1475 |
| MroI | TCCGGA | 1 cut(s) | 924 |
| MroXI | GAANNNNTTC | 1 cut(s) | 666 |
| MslI | CAYNNNNRTG | 3 cut(s) | 392, 1228, 1313 |
| MspA1I | CMGCKG | 1 cut(s) | 673 |
| MspI | CCGG | 3 cut(s) | 327, 925, 1100 |
| MspR9I | CCNGG | 6 cut(s) | 277, 560, 586, 1241, 1260, 1488 |
| MunI | CAATTG | 1 cut(s) | 606 |
| MvaI | CCWGG | 6 cut(s) | 277, 560, 586, 1241, 1260, 1488 |
| MvnI | CGCG | 5 cut(s) | 90, 138, 351, 371, 476 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 81, 548, 620, 679, 877 |
| NdeI | CATATG | 1 cut(s) | 711 |
| NdeII | GATC | 2 cut(s) | 961, 1037 |
| NlaIII | CATG | 1 cut(s) | 1127 |
| NlaIV | GGNNCC | 4 cut(s) | 281, 590, 1245, 1444 |
| NmeAIII | GCCGAG | 1 cut(s) | 364 |
| NmuCI | GTSAC | 3 cut(s) | 163, 898, 916 |
| OliI | CACNNNNGTG | 2 cut(s) | 392, 1228 |
| PaeR7I | CTCGAG | 2 cut(s) | 284, 344 |
| PaqCI | CACCTGC | 1 cut(s) | 994 |
| PasI | CCCWGGG | 1 cut(s) | 1240 |
| PceI | AGGCCT | 1 cut(s) | 1111 |
| PciSI | GCTCTTC | 1 cut(s) | 93 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 219, 342, 473 |
| PdmI | GAANNNNTTC | 1 cut(s) | 666 |
| PfeI | GAWTC | 1 cut(s) | 520 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1481 |
| PfoI | TCCNGGA | 1 cut(s) | 1258 |
| PkrI | GCNGC | 7 cut(s) | 527, 550, 613, 835, 838, 1270, 1511 |
| PleI | GAGTC | 2 cut(s) | 218, 684 |
| PpsI | GAGTC | 2 cut(s) | 218, 684 |
| PpuMI | RGGWCCY | 1 cut(s) | 588 |
| Psp124BI | GAGCTC | 1 cut(s) | 345 |
| Psp1406I | AACGTT | 1 cut(s) | 1143 |
| Psp5II | RGGWCCY | 1 cut(s) | 588 |
| Psp6I | CCWGG | 6 cut(s) | 275, 558, 584, 1239, 1258, 1486 |
| PspFI | CCCAGC | 1 cut(s) | 290 |
| PspGI | CCWGG | 6 cut(s) | 275, 558, 584, 1239, 1258, 1486 |
| PspN4I | GGNNCC | 4 cut(s) | 281, 590, 1245, 1444 |
| PspPI | GGNCC | 7 cut(s) | 279, 469, 556, 574, 588, 1244, 1484 |
| PspPPI | RGGWCCY | 1 cut(s) | 588 |
| PspXI | VCTCGAGB | 2 cut(s) | 284, 344 |
| PstI | CTGCAG | 1 cut(s) | 1273 |
| PstNI | CAGNNNCTG | 1 cut(s) | 760 |
| PvuII | CAGCTG | 1 cut(s) | 673 |
| RsaI | GTAC | 3 cut(s) | 14, 644, 1275 |
| RsaNI | GTAC | 3 cut(s) | 13, 643, 1274 |
| RseI | CAYNNNNRTG | 3 cut(s) | 392, 1228, 1313 |
| SacI | GAGCTC | 1 cut(s) | 345 |
| SalI | GTCGAC | 1 cut(s) | 376 |
| SapI | GCTCTTC | 1 cut(s) | 93 |
| SatI | GCNGC | 7 cut(s) | 526, 549, 612, 834, 837, 1269, 1510 |
| Sau3AI | GATC | 2 cut(s) | 961, 1037 |
| Sau96I | GGNCC | 7 cut(s) | 279, 469, 556, 574, 588, 1244, 1484 |
| ScaI | AGTACT | 1 cut(s) | 1275 |
| SchI | GAGTC | 2 cut(s) | 218, 685 |
| ScrFI | CCNGG | 6 cut(s) | 277, 560, 586, 1241, 1260, 1488 |
| SduI | GDGCHC | 6 cut(s) | 77, 249, 291, 345, 585, 1198 |
| SexAI | ACCWGGT | 1 cut(s) | 275 |
| SfaNI | GCATC | 1 cut(s) | 1543 |
| SfcI | CTRYAG | 1 cut(s) | 1269 |
| Sfr274I | CTCGAG | 2 cut(s) | 284, 344 |
| SgrDI | CGTCGACG | 1 cut(s) | 376 |
| SinI | GGWCC | 6 cut(s) | 279, 469, 556, 588, 1244, 1484 |
| SlaI | CTCGAG | 2 cut(s) | 284, 344 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 392, 1228, 1313 |
| SmlI | CTYRAG | 4 cut(s) | 284, 344, 514, 1188 |
| SmoI | CTYRAG | 4 cut(s) | 284, 344, 514, 1188 |
| Sse9I | AATT | 8 cut(s) | 113, 606, 633, 694, 952, 976, 1183, 1534 |
| SseBI | AGGCCT | 1 cut(s) | 1111 |
| SspI | AATATT | 1 cut(s) | 1291 |
| SspMI | CTAG | 4 cut(s) | 539, 848, 1337, 1371 |
| SstI | GAGCTC | 1 cut(s) | 345 |
| StuI | AGGCCT | 1 cut(s) | 1111 |
| StyD4I | CCNGG | 6 cut(s) | 275, 558, 584, 1239, 1258, 1486 |
| StyI | CCWWGG | 1 cut(s) | 716 |
| TaaI | ACNGT | 5 cut(s) | 391, 1021, 1175, 1207, 1456 |
| TaiI | ACGT | 4 cut(s) | 216, 383, 749, 1146 |
| TaqI | TCGA | 8 cut(s) | 243, 285, 345, 377, 429, 440, 1381, 1423 |
| TasI | AATT | 8 cut(s) | 113, 606, 633, 694, 952, 976, 1183, 1534 |
| TatI | WGTACW | 2 cut(s) | 642, 1273 |
| TauI | GCSGC | 2 cut(s) | 614, 836 |
| TfiI | GAWTC | 1 cut(s) | 520 |
| TscAI | CASTG | 3 cut(s) | 1053, 1212, 1402 |
| TseFI | GTSAC | 3 cut(s) | 163, 898, 916 |
| TseI | GCWGC | 5 cut(s) | 525, 548, 836, 1268, 1509 |
| Tsp45I | GTSAC | 3 cut(s) | 163, 898, 916 |
| TspDTI | ATGAA | 8 cut(s) | 17, 247, 698, 1032, 1140, 1154, 1226, 1425 |
| TspGWI | ACGGA | 2 cut(s) | 83, 1539 |
| TspRI | CASTG | 3 cut(s) | 1053, 1212, 1402 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1481 |
| VneI | GTGCAC | 2 cut(s) | 73, 1194 |
| VpaK11BI | GGWCC | 6 cut(s) | 279, 469, 556, 588, 1244, 1484 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1437 |
| XapI | RAATTY | 1 cut(s) | 1534 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 394 |
| XhoI | CTCGAG | 2 cut(s) | 284, 344 |
| XmiI | GTMKAC | 2 cut(s) | 377, 933 |
| XmnI | GAANNNNTTC | 1 cut(s) | 666 |
| XspI | CTAG | 4 cut(s) | 539, 848, 1337, 1371 |
| ZraI | GACGTC | 1 cut(s) | 381 |
| ZrmI | AGTACT | 1 cut(s) | 1275 |