Rh2AG151100

Transcription initiation factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0016176
Physical Location & Seq
Reverse (-)
13786506 .. 13789280
2775 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG151100.1

Sequence Viewer

Length: 1539 bp
ATGAAGTGCCCGTACTGCTCGGCCGGACAAGGCCGTTGTGCGACAACGACCTCCCGTCGTTCAATCACGGAGTGCACCTCCTGCGGGCGCGTGGTGGAAGAGCGCCAAACCCAATTCCACCACCTCTTCCACCTACGCGCCCAAGACAACCCTCTCTGCCTCGTCACCTCCGACCTCCCAACCCCTCCTCCGCCACCCCAAAGCGACGACGTCGAAGACCCGTTCGAGCCCACGGGATTCATCACCGCCTTCTCCACCTGGTCCCTCGAGCCCAGCCCACTCTACCTCCGCTCCTCCCTCTCCTTCTCCGGCCACCTCGCGGAGCTCGAGCGCGTGCTCGAACTGTCCTCCGCCTGCGCCACCTCCTCCACCGTCGTGGTCGACAATCTCAGGGCGTATATGCAGATCATCGACGTGGCTTCGATTTTGGGATTGGATTATGACATTTCGGACCACGCGTTTCAGTTGTTCAGGGATTGTTGCTCCACTACTTGCTTGAGGAATCGGAGCGTTGAAGCCCTAGCTACTGCTGCTCTCGTCCAGGCCATTAGGGAGGCCCAAGAACCCAGAACCCTTCAGGAGATCTCAATTGCAGCTAATGTAGCGCAGAAGGAAATTGGTAAGTACATCAAGATACTTGGAGAAGCGCTTCAACTAAGTCAGCCTATCAACAGCAATTCCATATCGGTCCATATGCCGAGGTTTTGCACTCTCCTCCAGCTAAATACGTCTGCTCAGAAACTGGCAACTCATATTGGAGAGGTTGTTATCAACAAATGCTTCTGCACTCGCAGAAACCCCATTAGCATCTCTGCGGCTGCTATATATTTAGCCTGCCAGCTTGAAGACAAGCGAAAAACTCAGGCAGAGATTTGTAAGGTGACTGGTCTTACCGAAGTCACTCTCCGGAAAGTCTACAAGGAACTCTTGGAAAATTGGGATGATTTACTCCCATCTAATTATACTCCGGCTGTTCCTCCAGAAAGAGCATTTCCTACTACTGTAATCGCTTCAGGACGATCTTCAGCACCGAAAGCTGATTTACCTGAGCTACCAGTTTTTTTGAACAGAGAGAGGCAGCCGGAGATAAAACCTGACAAACCAGAGGGATTAGATATGAACGTTGAGCCAACCGAAGAAGAGGATTTTGACAGTAGAGTTAATTCTCGAGTTGCACAGTCAACAGTGGTGAACCTTTCAACACTTTTGTGGCAATCCCAGGTTCCATTTGGTACTTCTGGAAGTGCAGCAGTACTGAAGTCACAGAATATTGCCGTAGCAATGGACATCGATATGCCACAGAGTAACCAACACCTCGAGCACAAGTTGGACAAGGACACCAAGGGTTCTACTGGTAATCGAAATCCAACTTCAAGTTCGAGTTCACTTGCCAGGCAGTTTCGATACCCACCTTCCTCAGGTTCCTCTCCAAATGTTCAATATTCGCTTCCTCCAAAGCTTGGACCAGGTTATACTGAGCTTAGAGGTAGCAGGGGTCAAAATGGAAGTGAAAATTCCAAACAGAGTGGGGATGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000182 GO:0000976 GO:0000977 GO:0000979 GO:0000988 GO:0000990 GO:0000991 GO:0000993 GO:0001012 GO:0001046 GO:0001047 GO:0001067 GO:0001098 GO:0001099 GO:0001139 GO:0001173 GO:0001174 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009058 GO:0009059 GO:0009526 GO:0009527 GO:0009536 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0016043 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019867 GO:0019899 GO:0022607 GO:0031090 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031334 GO:0031967 GO:0031968 GO:0031975 GO:0032774 GO:0032991 GO:0032993 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0042170 GO:0043167 GO:0043169 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043254 GO:0043565 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0046872 GO:0046914 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051123 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0060260 GO:0060261 GO:0065003 GO:0065004 GO:0065007 GO:0070063 GO:0070897 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0098588 GO:0098805 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990114 GO:1990837 GO:2000112 GO:2000142 GO:2000144 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03022 ko05169 ko05203 map03022 map05169 map05203
Pfam Domains
Protein Families
TFIIB

Protein Analysis

512

Amino Acids

56.15

Weight (kDa)

5.82

Isoelectric Point (pI)

60.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TFIIB PF00382 132 - 213 2.6e-10 Transcription factor TFIIB repeat
TFIIB PF00382 230 - 311 2.9e-16 Transcription factor TFIIB repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016176)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G36650
fragaria_vesca FvH4_1g13530
malus_domestica MD15G1265100.v1.1
prunus_persica Prupe.7G152500_v2.0.a1
pyrus_communis pycom15g23090
rosa_chinensis RchiOBHm_Chr2g0101921
rosa_laevigata RLG00000017116
rosa_multiflora Rmu_sc0010781.1_g000003
rosa_roxburghii Rroxscaffold_2G00140950
rosa_rugosa Rorug02G0103100
rosa_samantha Rh2AG151100 Rh2BG156600 Rh2CG156400 Rh2DG156700
rosa_wichuraiana Rw2G011790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 213
AccB7I CCANNNNNTGG 1 cut(s) 1460
AccBSI CCGCTC 1 cut(s) 291
AccI GTMKAC 2 cut(s) 381, 915
AccII CGCG 5 cut(s) 90, 138, 320, 333, 458
AccIII TCCGGA 1 cut(s) 906
AciI CCGC 7 cut(s) 84, 191, 246, 289, 320, 351, 815
AclI AACGTT 1 cut(s) 1122
AcoI YGGCCR 2 cut(s) 21, 310
AcsI RAATTY 1 cut(s) 1513
AcuI CTGAAG 4 cut(s) 560, 996, 1008, 1277
AcyI GRCGYC 1 cut(s) 210
AdeI CACNNNGTG 1 cut(s) 72
AfaI GTAC 4 cut(s) 14, 626, 1234, 1254
AfeI AGCGCT 1 cut(s) 648
AfiI CCNNNNNNNGG 4 cut(s) 84, 319, 1418, 1460
AflIII ACRYGT 1 cut(s) 456
AgsI TTSAA 8 cut(s) 63, 515, 653, 845, 1066, 1200, 1374, 1439
AhdI GACNNNNNGTC 1 cut(s) 54
AjiI CACGTC 1 cut(s) 415
AjnI CCWGG 5 cut(s) 257, 540, 1218, 1391, 1465
AjuI GAANNNNNNNTTGG 2 cut(s) 1360, 1392
AleI CACNNNNGTG 2 cut(s) 374, 1207
AluBI AGCT 9 cut(s) 325, 524, 596, 721, 841, 1037, 1051, 1459, 1480
AluI AGCT 9 cut(s) 325, 524, 596, 721, 841, 1037, 1051, 1459, 1480
Alw21I GWGCWC 4 cut(s) 77, 327, 339, 1323
Alw44I GTGCAC 1 cut(s) 73
AlwNI CAGNNNCTG 1 cut(s) 742
Ama87I CYCGRG 4 cut(s) 266, 326, 1167, 1316
Aor13HI TCCGGA 1 cut(s) 906
Aor51HI AGCGCT 1 cut(s) 648
AoxI GGCC 5 cut(s) 21, 31, 310, 543, 555
ApaLI GTGCAC 1 cut(s) 73
ApeKI GCWGC 5 cut(s) 530, 593, 818, 1078, 1247
ApoI RAATTY 1 cut(s) 1513
Asp700I GAANNNNTTC 1 cut(s) 648
AspLEI GCGC 7 cut(s) 90, 105, 140, 333, 359, 607, 649
AspS9I GGNCC 5 cut(s) 261, 451, 556, 688, 1463
AsuHPI GGTGA 4 cut(s) 157, 235, 892, 1201
AvaI CYCGRG 4 cut(s) 266, 326, 1167, 1316
AvaII GGWCC 4 cut(s) 261, 451, 688, 1463
AxyI CCTNAGG 1 cut(s) 1417
BaeGI GKGCMC 2 cut(s) 11, 77
BanII GRGCYC 3 cut(s) 231, 273, 327
BarI GAAGNNNNNNTAC 1 cut(s) 28
BbsI GAAGAC 2 cut(s) 222, 852
Bbv12I GWGCWC 4 cut(s) 77, 327, 339, 1323
BbvI GCAGC 5 cut(s) 517, 605, 805, 1090, 1259
BccI CCATC 1 cut(s) 961
BceAI ACGGC 2 cut(s) 18, 1259
BciT130I CCWGG 5 cut(s) 259, 542, 1220, 1393, 1467
BfaI CTAG 1 cut(s) 521
BfoI RGCGCY 2 cut(s) 106, 650
BglII AGATCT 1 cut(s) 582
BisI GCNGC 6 cut(s) 531, 594, 816, 819, 1079, 1248
BlsI GCNGC 6 cut(s) 532, 595, 817, 820, 1080, 1249
BmcAI AGTACT 1 cut(s) 1254
Bme1390I CCNGG 5 cut(s) 259, 542, 1220, 1393, 1467
Bme18I GGWCC 4 cut(s) 261, 451, 688, 1463
BmeRI GACNNNNNGTC 1 cut(s) 54
BmeT110I CYCGRG 4 cut(s) 266, 326, 1167, 1316
BmgBI CACGTC 1 cut(s) 415
BmgT120I GGNCC 5 cut(s) 261, 451, 556, 688, 1463
BmiI GGNNCC 3 cut(s) 263, 1224, 1423
BmrFI CCNGG 5 cut(s) 259, 542, 1220, 1393, 1467
BmsI GCATC 2 cut(s) 816, 1522
BpiI GAAGAC 2 cut(s) 222, 852
BplI GAGNNNNNCTC 2 cut(s) 62, 94
BpmI CTGGAG 2 cut(s) 701, 963
Bpu10I CCTNAGC 1 cut(s) 1047
BpuEI CTTGAG 1 cut(s) 517
Bsa29I ATCGAT 1 cut(s) 1290
BsaHI GRCGYC 1 cut(s) 210
BsaJI CCNNGG 4 cut(s) 231, 698, 1218, 1341
BsaWI WCCGGW 1 cut(s) 906
BsaXI ACNNNNNCTCC 8 cut(s) 172, 202, 270, 275, 300, 305, 750, 780
Bsc4I CCNNNNNNNGG 4 cut(s) 84, 319, 1418, 1460
Bse1I ACTGG 4 cut(s) 747, 889, 1055, 1357
Bse21I CCTNAGG 1 cut(s) 1417
Bse3DI GCAATG 1 cut(s) 1287
BseAI TCCGGA 1 cut(s) 906
BseBI CCWGG 5 cut(s) 259, 542, 1220, 1393, 1467
BseCI ATCGAT 1 cut(s) 1290
BseDI CCNNGG 4 cut(s) 231, 698, 1218, 1341
BseGI GGATG 2 cut(s) 946, 1537
BseLI CCNNNNNNNGG 4 cut(s) 84, 319, 1418, 1460
BseMI GCAATG 1 cut(s) 1287
BseMII CTCAG 6 cut(s) 403, 749, 875, 1038, 1431, 1467
BseNI ACTGG 4 cut(s) 747, 889, 1055, 1357
BseRI GAGGAG 4 cut(s) 177, 283, 355, 704
BseSI GKGCMC 2 cut(s) 11, 77
BseX3I CGGCCG 1 cut(s) 21
BseXI GCAGC 5 cut(s) 517, 605, 805, 1090, 1259
BseYI CCCAGC 1 cut(s) 272
BsgI GTGCAG 2 cut(s) 769, 1266
Bsh1236I CGCG 5 cut(s) 90, 138, 320, 333, 458
Bsh1285I CGRYCG 1 cut(s) 24
BshFI GGCC 5 cut(s) 23, 33, 312, 545, 557
BshVI ATCGAT 1 cut(s) 1290
BsiEI CGRYCG 1 cut(s) 24
BsiHKAI GWGCWC 4 cut(s) 77, 327, 339, 1323
BsiHKCI CYCGRG 4 cut(s) 266, 326, 1167, 1316
BsiSI CCGG 5 cut(s) 24, 309, 907, 968, 1082
BslFI GGGAC 1 cut(s) 247
BslI CCNNNNNNNGG 4 cut(s) 84, 319, 1418, 1460
BsmFI GGGAC 1 cut(s) 247
BsnI GGCC 5 cut(s) 23, 33, 312, 545, 557
BsoBI CYCGRG 4 cut(s) 266, 326, 1167, 1316
Bsp1286I GDGCHC 7 cut(s) 11, 77, 231, 273, 327, 339, 1323
Bsp13I TCCGGA 1 cut(s) 906
Bsp143I GATC 3 cut(s) 405, 582, 1019
BspACI CCGC 7 cut(s) 84, 191, 246, 289, 320, 351, 815
BspANI GGCC 5 cut(s) 23, 33, 312, 545, 557
BspCNI CTCAG 6 cut(s) 402, 748, 874, 1039, 1430, 1468
BspDI ATCGAT 1 cut(s) 1290
BspEI TCCGGA 1 cut(s) 906
BspFNI CGCG 5 cut(s) 90, 138, 320, 333, 458
BspLI GGNNCC 3 cut(s) 263, 1224, 1423
BspQI GCTCTTC 1 cut(s) 93
BsrBI CCGCTC 1 cut(s) 291
BsrDI GCAATG 1 cut(s) 1287
BsrI ACTGG 4 cut(s) 747, 889, 1055, 1357
BssECI CCNNGG 4 cut(s) 231, 698, 1218, 1341
BssMI GATC 3 cut(s) 405, 582, 1019
BssNI GRCGYC 1 cut(s) 210
BssT1I CCWWGG 1 cut(s) 1341
Bst2UI CCWGG 5 cut(s) 259, 542, 1220, 1393, 1467
Bst4CI ACNGT 6 cut(s) 345, 373, 1003, 1154, 1179, 1186
Bst6I CTCTTC 3 cut(s) 93, 131, 1134
BstACI GRCGYC 1 cut(s) 210
BstAPI GCANNNNNTGC 1 cut(s) 81
BstC8I GCNNGC 5 cut(s) 86, 335, 355, 835, 839
BstDEI CTNAG 8 cut(s) 389, 656, 735, 861, 1047, 1417, 1476, 1481
BstDSI CCRYGG 1 cut(s) 231
BstENI CCTNNNNNAGG 1 cut(s) 1416
BstF5I GGATG 2 cut(s) 946, 1537
BstFNI CGCG 5 cut(s) 90, 138, 320, 333, 458
BstH2I RGCGCY 2 cut(s) 106, 650
BstHHI GCGC 7 cut(s) 90, 105, 140, 333, 359, 607, 649
BstKTI GATC 3 cut(s) 408, 585, 1022
BstMBI GATC 3 cut(s) 405, 582, 1019
BstMCI CGRYCG 1 cut(s) 24
BstMWI GCNNNNNNNGC 5 cut(s) 15, 81, 530, 602, 1034
BstNI CCWGG 5 cut(s) 259, 542, 1220, 1393, 1467
BstSCI CCNGG 5 cut(s) 257, 540, 1218, 1391, 1465
BstSLI GKGCMC 2 cut(s) 11, 77
BstUI CGCG 5 cut(s) 90, 138, 320, 333, 458
BstV1I GCAGC 5 cut(s) 517, 605, 805, 1090, 1259
BstV2I GAAGAC 2 cut(s) 222, 852
BstX2I RGATCY 1 cut(s) 582
BstXI CCANNNNNNTGG 1 cut(s) 376
BstYI RGATCY 1 cut(s) 582
BstZI CGGCCG 1 cut(s) 21
Bsu15I ATCGAT 1 cut(s) 1290
Bsu36I CCTNAGG 1 cut(s) 1417
BsuRI GGCC 5 cut(s) 23, 33, 312, 545, 557
BsuTUI ATCGAT 1 cut(s) 1290
BtgI CCRYGG 1 cut(s) 231
BtrI CACGTC 1 cut(s) 415
BtsCI GGATG 2 cut(s) 946, 1537
BtsIMutI CAGTG 1 cut(s) 1191
Cac8I GCNNGC 5 cut(s) 86, 335, 355, 835, 839
CaiI CAGNNNCTG 1 cut(s) 742
CfoI GCGC 7 cut(s) 90, 105, 140, 333, 359, 607, 649
Cfr13I GGNCC 5 cut(s) 261, 451, 556, 688, 1463
ClaI ATCGAT 1 cut(s) 1290
CsiI ACCWGGT 2 cut(s) 257, 1465
Csp6I GTAC 4 cut(s) 13, 625, 1233, 1253
CspCI CAANNNNNGTGG 1 cut(s) 1507
CviQI GTAC 4 cut(s) 13, 625, 1233, 1253
DdeI CTNAG 8 cut(s) 389, 656, 735, 861, 1047, 1417, 1476, 1481
DpnI GATC 3 cut(s) 407, 584, 1021
DpnII GATC 3 cut(s) 405, 582, 1019
DraIII CACNNNGTG 1 cut(s) 72
DriI GACNNNNNGTC 1 cut(s) 54
EaeI YGGCCR 2 cut(s) 21, 310
EagI CGGCCG 1 cut(s) 21
Eam1104I CTCTTC 3 cut(s) 93, 131, 1134
Eam1105I GACNNNNNGTC 1 cut(s) 54
EarI CTCTTC 3 cut(s) 93, 131, 1134
EciI GGCGGA 2 cut(s) 180, 340
Ecl136II GAGCTC 1 cut(s) 325
EclXI CGGCCG 1 cut(s) 21
Eco130I CCWWGG 1 cut(s) 1341
Eco24I GRGCYC 3 cut(s) 231, 273, 327
Eco47I GGWCC 4 cut(s) 261, 451, 688, 1463
Eco47III AGCGCT 1 cut(s) 648
Eco52I CGGCCG 1 cut(s) 21
Eco53kI GAGCTC 1 cut(s) 325
Eco57I CTGAAG 4 cut(s) 560, 996, 1008, 1277
Eco81I CCTNAGG 1 cut(s) 1417
Eco88I CYCGRG 4 cut(s) 266, 326, 1167, 1316
EcoICRI GAGCTC 1 cut(s) 325
EcoNI CCTNNNNNAGG 1 cut(s) 1416
EcoRII CCWGG 5 cut(s) 257, 540, 1218, 1391, 1465
EcoT14I CCWWGG 1 cut(s) 1341
EcoT38I GRGCYC 3 cut(s) 231, 273, 327
ErhI CCWWGG 1 cut(s) 1341
FalI AAGNNNNNCTT 2 cut(s) 911, 943
FaqI GGGAC 1 cut(s) 247
FauI CCCGC 1 cut(s) 77
FauNDI CATATG 1 cut(s) 693
FblI GTMKAC 2 cut(s) 381, 915
Fnu4HI GCNGC 6 cut(s) 531, 594, 816, 819, 1079, 1248
FokI GGATG 1 cut(s) 953
FriOI GRGCYC 3 cut(s) 231, 273, 327
Fsp4HI GCNGC 6 cut(s) 531, 594, 816, 819, 1079, 1248
FspBI CTAG 1 cut(s) 521
GlaI GCGC 7 cut(s) 89, 104, 139, 332, 358, 606, 648
GluI GCNGC 6 cut(s) 531, 594, 816, 819, 1079, 1248
GsaI CCCAGC 1 cut(s) 276
GsuI CTGGAG 2 cut(s) 701, 963
HaeII RGCGCY 2 cut(s) 106, 650
HaeIII GGCC 5 cut(s) 23, 33, 312, 545, 557
HapII CCGG 5 cut(s) 24, 309, 907, 968, 1082
HhaI GCGC 7 cut(s) 90, 105, 140, 333, 359, 607, 649
Hin1I GRCGYC 1 cut(s) 210
Hin6I GCGC 7 cut(s) 88, 103, 138, 331, 357, 605, 647
HinP1I GCGC 7 cut(s) 88, 103, 138, 331, 357, 605, 647
HincII GTYRAC 2 cut(s) 382, 1182
HindII GTYRAC 2 cut(s) 382, 1182
HindIII AAGCTT 1 cut(s) 1457
HinfI GANTC 2 cut(s) 237, 502
HpaII CCGG 5 cut(s) 24, 309, 907, 968, 1082
HphI GGTGA 4 cut(s) 157, 235, 892, 1201
Hpy166II GTNNAC 6 cut(s) 75, 382, 916, 1182, 1192, 1385
Hpy188I TCNGA 4 cut(s) 172, 451, 507, 738
Hpy188III TCNNGA 7 cut(s) 578, 631, 907, 980, 1014, 1167, 1239
Hpy8I GTNNAC 6 cut(s) 75, 382, 916, 1182, 1192, 1385
Hpy99I CGWCG 6 cut(s) 60, 209, 212, 215, 377, 416
HpyAV CCTTC 5 cut(s) 259, 313, 584, 604, 1422
HpyCH4III ACNGT 6 cut(s) 345, 373, 1003, 1154, 1179, 1186
HpyCH4IV ACGT 4 cut(s) 210, 414, 728, 1122
HpyCH4V TGCA 7 cut(s) 75, 403, 593, 708, 786, 1175, 1247
HpyF10VI GCNNNNNNNGC 5 cut(s) 15, 81, 530, 602, 1034
HpyF3I CTNAG 8 cut(s) 389, 656, 735, 861, 1047, 1417, 1476, 1481
HpySE526I ACGT 4 cut(s) 210, 414, 728, 1122
Hsp92I GRCGYC 1 cut(s) 210
HspAI GCGC 7 cut(s) 88, 103, 138, 331, 357, 605, 647
Kpn2I TCCGGA 1 cut(s) 906
Kzo9I GATC 3 cut(s) 405, 582, 1019
LguI GCTCTTC 1 cut(s) 93
LmnI GCTCC 4 cut(s) 296, 322, 488, 507
Lsp1109I GCAGC 5 cut(s) 517, 605, 805, 1090, 1259
LweI GCATC 2 cut(s) 816, 1522
MabI ACCWGGT 2 cut(s) 257, 1465
MaeI CTAG 1 cut(s) 521
MaeII ACGT 4 cut(s) 210, 414, 728, 1122
MaeIII GTNAC 5 cut(s) 163, 880, 898, 1260, 1304
MalI GATC 3 cut(s) 407, 584, 1021
MbiI CCGCTC 1 cut(s) 291
MboI GATC 3 cut(s) 405, 582, 1019
MboII GAAGA 7 cut(s) 110, 118, 227, 857, 1014, 1148, 1151
MfeI CAATTG 1 cut(s) 588
MflI RGATCY 1 cut(s) 582
MhlI GDGCHC 7 cut(s) 11, 77, 231, 273, 327, 339, 1323
MluCI AATT 8 cut(s) 113, 588, 615, 676, 934, 958, 1162, 1513
MluI ACGCGT 1 cut(s) 456
MmeI TCCRAC 3 cut(s) 195, 1308, 1391
MroI TCCGGA 1 cut(s) 906
MroXI GAANNNNTTC 1 cut(s) 648
MseI TTAA 1 cut(s) 1161
MslI CAYNNNNRTG 4 cut(s) 374, 413, 1207, 1292
MspI CCGG 5 cut(s) 24, 309, 907, 968, 1082
MspR9I CCNGG 5 cut(s) 259, 542, 1220, 1393, 1467
MunI CAATTG 1 cut(s) 588
MvaI CCWGG 5 cut(s) 259, 542, 1220, 1393, 1467
MvnI CGCG 5 cut(s) 90, 138, 320, 333, 458
MwoI GCNNNNNNNGC 5 cut(s) 15, 81, 530, 602, 1034
NdeI CATATG 1 cut(s) 693
NdeII GATC 3 cut(s) 405, 582, 1019
NlaIV GGNNCC 3 cut(s) 263, 1224, 1423
NmeAIII GCCGAG 1 cut(s) 723
NmuCI GTSAC 4 cut(s) 163, 880, 898, 1260
OliI CACNNNNGTG 2 cut(s) 374, 1207
PaeR7I CTCGAG 4 cut(s) 266, 326, 1167, 1316
PciSI GCTCTTC 1 cut(s) 93
PcsI WCGNNNNNNNCGW 3 cut(s) 168, 324, 455
PdmI GAANNNNTTC 1 cut(s) 648
PfeI GAWTC 2 cut(s) 237, 502
PflFI GACNNNGTC 1 cut(s) 209
PflMI CCANNNNNTGG 1 cut(s) 1460
PkrI GCNGC 6 cut(s) 532, 595, 817, 820, 1080, 1249
Psp124BI GAGCTC 1 cut(s) 327
Psp1406I AACGTT 1 cut(s) 1122
Psp6I CCWGG 5 cut(s) 257, 540, 1218, 1391, 1465
PspFI CCCAGC 1 cut(s) 272
PspGI CCWGG 5 cut(s) 257, 540, 1218, 1391, 1465
PspN4I GGNNCC 3 cut(s) 263, 1224, 1423
PspPI GGNCC 5 cut(s) 261, 451, 556, 688, 1463
PspXI VCTCGAGB 3 cut(s) 266, 326, 1316
PstNI CAGNNNCTG 1 cut(s) 742
PsuI RGATCY 1 cut(s) 582
PsyI GACNNNGTC 1 cut(s) 209
RsaI GTAC 4 cut(s) 14, 626, 1234, 1254
RsaNI GTAC 4 cut(s) 13, 625, 1233, 1253
RseI CAYNNNNRTG 4 cut(s) 374, 413, 1207, 1292
SacI GAGCTC 1 cut(s) 327
SalI GTCGAC 1 cut(s) 380
SapI GCTCTTC 1 cut(s) 93
SaqAI TTAA 1 cut(s) 1161
SatI GCNGC 6 cut(s) 531, 594, 816, 819, 1079, 1248
Sau3AI GATC 3 cut(s) 405, 582, 1019
Sau96I GGNCC 5 cut(s) 261, 451, 556, 688, 1463
ScaI AGTACT 1 cut(s) 1254
ScrFI CCNGG 5 cut(s) 259, 542, 1220, 1393, 1467
SduI GDGCHC 7 cut(s) 11, 77, 231, 273, 327, 339, 1323
SexAI ACCWGGT 2 cut(s) 257, 1465
SfaNI GCATC 2 cut(s) 816, 1522
Sfr274I CTCGAG 4 cut(s) 266, 326, 1167, 1316
SinI GGWCC 4 cut(s) 261, 451, 688, 1463
SlaI CTCGAG 4 cut(s) 266, 326, 1167, 1316
SmiMI CAYNNNNRTG 4 cut(s) 374, 413, 1207, 1292
SmlI CTYRAG 5 cut(s) 266, 326, 496, 1167, 1316
SmoI CTYRAG 5 cut(s) 266, 326, 496, 1167, 1316
Sse9I AATT 8 cut(s) 113, 588, 615, 676, 934, 958, 1162, 1513
SsiI CCGC 7 cut(s) 84, 191, 246, 289, 320, 351, 815
SspI AATATT 2 cut(s) 1270, 1442
SspMI CTAG 1 cut(s) 521
SstI GAGCTC 1 cut(s) 327
StyD4I CCNGG 5 cut(s) 257, 540, 1218, 1391, 1465
StyI CCWWGG 1 cut(s) 1341
TaaI ACNGT 6 cut(s) 345, 373, 1003, 1154, 1179, 1186
TaiI ACGT 4 cut(s) 213, 417, 731, 1125
TaqII GACCGA 1 cut(s) 676
TasI AATT 8 cut(s) 113, 588, 615, 676, 934, 958, 1162, 1513
TatI WGTACW 2 cut(s) 624, 1252
TauI GCSGC 1 cut(s) 818
TfiI GAWTC 2 cut(s) 237, 502
Tru1I TTAA 1 cut(s) 1161
Tru9I TTAA 1 cut(s) 1161
TscAI CASTG 1 cut(s) 1191
TseFI GTSAC 4 cut(s) 163, 880, 898, 1260
TseI GCWGC 5 cut(s) 530, 593, 818, 1078, 1247
Tsp45I GTSAC 4 cut(s) 163, 880, 898, 1260
TspDTI ATGAA 3 cut(s) 17, 229, 1133
TspGWI ACGGA 1 cut(s) 83
TspRI CASTG 1 cut(s) 1191
Tth111I GACNNNGTC 1 cut(s) 209
Van91I CCANNNNNTGG 1 cut(s) 1460
VneI GTGCAC 1 cut(s) 73
VpaK11BI GGWCC 4 cut(s) 261, 451, 688, 1463
XagI CCTNNNNNAGG 1 cut(s) 1416
XapI RAATTY 1 cut(s) 1513
XcmI CCANNNNNNNNNTGG 1 cut(s) 1226
XhoI CTCGAG 4 cut(s) 266, 326, 1167, 1316
XmiI GTMKAC 2 cut(s) 381, 915
XmnI GAANNNNTTC 1 cut(s) 648
XspI CTAG 1 cut(s) 521
ZraI GACGTC 1 cut(s) 211
ZrmI AGTACT 1 cut(s) 1254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.