Rorug02G0103100

Transcription initiation factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0016176
Physical Location & Seq
Reverse (-)
8786154 .. 8790905
4752 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0103100.1

Sequence Viewer

Length: 852 bp
ATGGAGCCTCCTACTTTCCAAGAAGCTCCGCGCTGTGACGTCTGCAAATGCAGCTTCAACGCTTTCAGGCGACGGCATCATTGCCGATCCTGTGGGCGGACATTGTGCCACGAACATTCAGCAAGCCAAATGGCTCTACCGCAGTTTGGCATTTACTCACCGGTTAGAGTTTGCAGTGATTGTTTTAACGGCTCCTCTCGACCTGCCAAAGGTGATGTACAAGCTTCTTCAGATGGAACTGATTCTGTAACAGCTGCAGTTTCTAGATTGGATATTGGTGGGGATTCAGATTCAAAGACTAAACCAACTATACAGTCTCAGCCTGTGTCAGCAGTTATAGAGTGTAAGTGTGGAATGCCCTTATGTATTTGTGAAGCTCCTGACCCATCTGTAGTTGCAGCTCCTATACAGAGCAAAACCACATCCGCCCCTGTCCCTCATTGTCCAAGACCAAAGAAAACAGAAACCGCTGTAAAAACCAAACCTTCAACTTCAAACAGCAAGCACAGTTCTGTCTTCAATCTCGGTCAAGCGAACAACGGGGTTTCTGATAAAAAGACGGATTACGAAGTCAATGGGGAGGGTATGAGAGAAGCTATAAAGAATGGTGATATTGATGCTGTGAAGAAGCTTCTGAGTGAGGGTGTTGATGCTAATTACCACGACAAACAAGGACTTTCTTTGCTACATTTAGCAGCAGTCTTTAATCAAACTGAGATAGTTTTTGCCCTCATGGACTCCGGAGGAAGCCTGGACTACAAGAATGCACAGGGGGAAACGCCACTGGATTGTGCTCCTGTAACATTGCAATACAAGATGCGGCAGAAGATGGAAGACGATAGACGAGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000182 GO:0000976 GO:0000977 GO:0000979 GO:0000988 GO:0000990 GO:0000991 GO:0000993 GO:0001012 GO:0001046 GO:0001047 GO:0001067 GO:0001098 GO:0001099 GO:0001139 GO:0001173 GO:0001174 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009058 GO:0009059 GO:0009526 GO:0009527 GO:0009536 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0016043 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019867 GO:0019899 GO:0022607 GO:0031090 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031334 GO:0031967 GO:0031968 GO:0031975 GO:0032774 GO:0032991 GO:0032993 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0042170 GO:0043167 GO:0043169 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043254 GO:0043565 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0046872 GO:0046914 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051123 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0060260 GO:0060261 GO:0065003 GO:0065004 GO:0065007 GO:0070063 GO:0070897 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0098588 GO:0098805 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990114 GO:1990837 GO:2000112 GO:2000142 GO:2000144 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03022 ko05169 ko05203 map03022 map05169 map05203
Pfam Domains
Protein Families
TFIIB

Protein Analysis

283

Amino Acids

30.57

Weight (kDa)

7.49

Isoelectric Point (pI)

53.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FYVE PF01363 7 - 63 1.7e-15 FYVE zinc finger
Ank_2 PF12796 198 - 265 1.5e-10 Ankyrin repeats (3 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016176)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G36650
fragaria_vesca FvH4_1g13530
malus_domestica MD15G1265100.v1.1
prunus_persica Prupe.7G152500_v2.0.a1
pyrus_communis pycom15g23090
rosa_chinensis RchiOBHm_Chr2g0101921
rosa_laevigata RLG00000017116
rosa_multiflora Rmu_sc0010781.1_g000003
rosa_roxburghii Rroxscaffold_2G00140950
rosa_rugosa Rorug02G0103100
rosa_samantha Rh2AG151100 Rh2BG156600 Rh2CG156400 Rh2DG156700
rosa_wichuraiana Rw2G011790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 42
Acc36I ACCTGC 1 cut(s) 211
AccII CGCG 1 cut(s) 31
AccIII TCCGGA 1 cut(s) 740
AciI CCGC 6 cut(s) 29, 97, 140, 426, 468, 820
AclWI GGATC 1 cut(s) 81
AcuI CTGAAG 1 cut(s) 213
AcyI GRCGYC 1 cut(s) 39
AfaI GTAC 1 cut(s) 219
AfiI CCNNNNNNNGG 3 cut(s) 96, 146, 209
AgeI ACCGGT 1 cut(s) 160
AgsI TTSAA 5 cut(s) 58, 294, 489, 495, 520
AjnI CCWGG 1 cut(s) 750
AluBI AGCT 8 cut(s) 26, 54, 224, 254, 377, 401, 596, 631
AluI AGCT 8 cut(s) 26, 54, 224, 254, 377, 401, 596, 631
Alw21I GWGCWC 1 cut(s) 796
Alw26I GTCTC 1 cut(s) 321
AlwI GGATC 1 cut(s) 81
Aor13HI TCCGGA 1 cut(s) 740
ApeKI GCWGC 4 cut(s) 51, 254, 398, 695
AsiGI ACCGGT 1 cut(s) 160
Asp700I GAANNNNTTC 1 cut(s) 241
AspLEI GCGC 1 cut(s) 33
AsuHPI GGTGA 3 cut(s) 150, 224, 620
BbsI GAAGAC 2 cut(s) 508, 840
Bbv12I GWGCWC 1 cut(s) 796
BbvI GCAGC 4 cut(s) 63, 241, 410, 707
BccI CCATC 3 cut(s) 227, 394, 823
BceAI ACGGC 2 cut(s) 89, 205
BciT130I CCWGG 1 cut(s) 752
BcoDI GTCTC 1 cut(s) 321
BfaI CTAG 1 cut(s) 264
BfmI CTRYAG 2 cut(s) 255, 390
BfuAI ACCTGC 1 cut(s) 211
BisI GCNGC 5 cut(s) 52, 255, 399, 696, 821
BlsI GCNGC 5 cut(s) 53, 256, 400, 697, 822
Bme1390I CCNGG 1 cut(s) 752
BmiI GGNNCC 2 cut(s) 6, 193
BmrFI CCNGG 1 cut(s) 752
BmsI GCATC 4 cut(s) 85, 607, 640, 807
BpiI GAAGAC 2 cut(s) 508, 840
BsaHI GRCGYC 1 cut(s) 39
BsaWI WCCGGW 2 cut(s) 160, 740
Bsc4I CCNNNNNNNGG 3 cut(s) 96, 146, 209
Bse118I RCCGGY 1 cut(s) 160
Bse1I ACTGG 1 cut(s) 789
Bse3DI GCAATG 2 cut(s) 79, 803
BseAI TCCGGA 1 cut(s) 740
BseBI CCWGG 1 cut(s) 752
BseGI GGATG 1 cut(s) 422
BseLI CCNNNNNNNGG 3 cut(s) 96, 146, 209
BseMI GCAATG 2 cut(s) 79, 803
BseMII CTCAG 3 cut(s) 332, 626, 705
BseNI ACTGG 1 cut(s) 789
BseRI GAGGAG 1 cut(s) 184
BseXI GCAGC 4 cut(s) 63, 241, 410, 707
Bsh1236I CGCG 1 cut(s) 31
BshTI ACCGGT 1 cut(s) 160
BsiHKAI GWGCWC 1 cut(s) 796
BsiSI CCGG 2 cut(s) 161, 741
BslFI GGGAC 1 cut(s) 419
BslI CCNNNNNNNGG 3 cut(s) 96, 146, 209
BsmAI GTCTC 1 cut(s) 321
BsmFI GGGAC 1 cut(s) 419
BsmI GAATGC 2 cut(s) 360, 769
Bsp1286I GDGCHC 1 cut(s) 796
Bsp13I TCCGGA 1 cut(s) 740
Bsp1407I TGTACA 1 cut(s) 217
Bsp143I GATC 1 cut(s) 86
BspACI CCGC 6 cut(s) 29, 97, 140, 426, 468, 820
BspCNI CTCAG 3 cut(s) 331, 627, 706
BspEI TCCGGA 1 cut(s) 740
BspFNI CGCG 1 cut(s) 31
BspLI GGNNCC 2 cut(s) 6, 193
BspMAI CTGCAG 1 cut(s) 259
BspMI ACCTGC 1 cut(s) 211
BspPI GGATC 1 cut(s) 81
BsrDI GCAATG 2 cut(s) 79, 803
BsrFI RCCGGY 1 cut(s) 160
BsrGI TGTACA 1 cut(s) 217
BsrI ACTGG 1 cut(s) 789
BssAI RCCGGY 1 cut(s) 160
BssMI GATC 1 cut(s) 86
BssNI GRCGYC 1 cut(s) 39
Bst2UI CCWGG 1 cut(s) 752
Bst4CI ACNGT 2 cut(s) 315, 509
BstACI GRCGYC 1 cut(s) 39
BstAUI TGTACA 1 cut(s) 217
BstC8I GCNNGC 2 cut(s) 124, 503
BstDEI CTNAG 3 cut(s) 318, 635, 714
BstENI CCTNNNNNAGG 1 cut(s) 207
BstF5I GGATG 1 cut(s) 422
BstFNI CGCG 1 cut(s) 31
BstHHI GCGC 1 cut(s) 33
BstKTI GATC 1 cut(s) 89
BstMAI GTCTC 1 cut(s) 321
BstMBI GATC 1 cut(s) 86
BstMWI GCNNNNNNNGC 1 cut(s) 51
BstNI CCWGG 1 cut(s) 752
BstSCI CCNGG 1 cut(s) 750
BstSFI CTRYAG 2 cut(s) 255, 390
BstUI CGCG 1 cut(s) 31
BstV1I GCAGC 4 cut(s) 63, 241, 410, 707
BstV2I GAAGAC 2 cut(s) 508, 840
BtsCI GGATG 1 cut(s) 422
BtsI GCAGTG 1 cut(s) 181
BtsIMutI CAGTG 2 cut(s) 181, 782
BveI ACCTGC 1 cut(s) 211
Cac8I GCNNGC 2 cut(s) 124, 503
CfoI GCGC 1 cut(s) 33
Cfr10I RCCGGY 1 cut(s) 160
Csp6I GTAC 1 cut(s) 218
CspAI ACCGGT 1 cut(s) 160
CviAII CATG 1 cut(s) 733
CviQI GTAC 1 cut(s) 218
DdeI CTNAG 3 cut(s) 318, 635, 714
DpnI GATC 1 cut(s) 88
DpnII GATC 1 cut(s) 86
EciI GGCGGA 2 cut(s) 112, 415
Eco57I CTGAAG 1 cut(s) 213
EcoNI CCTNNNNNAGG 1 cut(s) 207
EcoRII CCWGG 1 cut(s) 750
FaeI CATG 1 cut(s) 736
FaiI YATR 7 cut(s) 311, 338, 364, 407, 587, 599, 734
FaqI GGGAC 1 cut(s) 419
FatI CATG 1 cut(s) 732
Fnu4HI GCNGC 5 cut(s) 52, 255, 399, 696, 821
FokI GGATG 1 cut(s) 409
Fsp4HI GCNGC 5 cut(s) 52, 255, 399, 696, 821
FspBI CTAG 1 cut(s) 264
GlaI GCGC 1 cut(s) 32
GluI GCNGC 5 cut(s) 52, 255, 399, 696, 821
HapII CCGG 2 cut(s) 161, 741
HhaI GCGC 1 cut(s) 33
Hin1I GRCGYC 1 cut(s) 39
Hin1II CATG 1 cut(s) 736
Hin6I GCGC 1 cut(s) 31
HinP1I GCGC 1 cut(s) 31
HindIII AAGCTT 2 cut(s) 222, 629
HinfI GANTC 4 cut(s) 242, 284, 290, 737
HpaII CCGG 2 cut(s) 161, 741
HphI GGTGA 3 cut(s) 150, 224, 620
Hpy188I TCNGA 4 cut(s) 232, 289, 550, 636
Hpy188III TCNNGA 4 cut(s) 198, 264, 380, 741
Hpy99I CGWCG 1 cut(s) 75
HpyAV CCTTC 1 cut(s) 495
HpyCH4III ACNGT 2 cut(s) 315, 509
HpyCH4IV ACGT 1 cut(s) 39
HpyCH4V TGCA 7 cut(s) 45, 51, 174, 257, 398, 767, 808
HpyF10VI GCNNNNNNNGC 1 cut(s) 51
HpyF3I CTNAG 3 cut(s) 318, 635, 714
HpySE526I ACGT 1 cut(s) 39
Hsp92I GRCGYC 1 cut(s) 39
Hsp92II CATG 1 cut(s) 736
HspAI GCGC 1 cut(s) 31
Kpn2I TCCGGA 1 cut(s) 740
Kzo9I GATC 1 cut(s) 86
LmnI GCTCC 6 cut(s) 4, 31, 197, 382, 406, 799
Lsp1109I GCAGC 4 cut(s) 63, 241, 410, 707
LweI GCATC 4 cut(s) 85, 607, 640, 807
MaeI CTAG 1 cut(s) 264
MaeII ACGT 1 cut(s) 39
MaeIII GTNAC 3 cut(s) 35, 247, 799
MalI GATC 1 cut(s) 88
MboI GATC 1 cut(s) 86
MboII GAAGA 5 cut(s) 219, 508, 637, 838, 845
MhlI GDGCHC 1 cut(s) 796
MluCI AATT 1 cut(s) 655
MlyI GAGTC 1 cut(s) 731
MnlI CCTC 7 cut(s) 18, 205, 447, 574, 634, 737, 740
MroI TCCGGA 1 cut(s) 740
MroXI GAANNNNTTC 1 cut(s) 241
MseI TTAA 2 cut(s) 186, 705
MspA1I CMGCKG 2 cut(s) 254, 470
MspI CCGG 2 cut(s) 161, 741
MspR9I CCNGG 1 cut(s) 752
Mva1269I GAATGC 2 cut(s) 360, 769
MvaI CCWGG 1 cut(s) 752
MvnI CGCG 1 cut(s) 31
MwoI GCNNNNNNNGC 1 cut(s) 51
NdeII GATC 1 cut(s) 86
NlaIII CATG 1 cut(s) 736
NlaIV GGNNCC 2 cut(s) 6, 193
NmuCI GTSAC 1 cut(s) 35
PctI GAATGC 2 cut(s) 360, 769
PdmI GAANNNNTTC 1 cut(s) 241
PfeI GAWTC 3 cut(s) 242, 284, 290
PinAI ACCGGT 1 cut(s) 160
PkrI GCNGC 5 cut(s) 53, 256, 400, 697, 822
PleI GAGTC 1 cut(s) 731
PpsI GAGTC 1 cut(s) 731
Psp6I CCWGG 1 cut(s) 750
PspGI CCWGG 1 cut(s) 750
PspN4I GGNNCC 2 cut(s) 6, 193
PstI CTGCAG 1 cut(s) 259
PvuII CAGCTG 1 cut(s) 254
RsaI GTAC 1 cut(s) 219
RsaNI GTAC 1 cut(s) 218
SaqAI TTAA 2 cut(s) 186, 705
SatI GCNGC 5 cut(s) 52, 255, 399, 696, 821
Sau3AI GATC 1 cut(s) 86
SchI GAGTC 1 cut(s) 731
ScrFI CCNGG 1 cut(s) 752
SduI GDGCHC 1 cut(s) 796
SfaNI GCATC 4 cut(s) 85, 607, 640, 807
SfcI CTRYAG 2 cut(s) 255, 390
Sse9I AATT 1 cut(s) 655
SsiI CCGC 6 cut(s) 29, 97, 140, 426, 468, 820
SspMI CTAG 1 cut(s) 264
StyD4I CCNGG 1 cut(s) 750
TaaI ACNGT 2 cut(s) 315, 509
TaiI ACGT 1 cut(s) 42
TaqI TCGA 1 cut(s) 199
TaqII GACCGA 1 cut(s) 515
TasI AATT 1 cut(s) 655
TatI WGTACW 1 cut(s) 217
TauI GCSGC 1 cut(s) 823
TfiI GAWTC 3 cut(s) 242, 284, 290
Tru1I TTAA 2 cut(s) 186, 705
Tru9I TTAA 2 cut(s) 186, 705
TscAI CASTG 2 cut(s) 181, 789
TseFI GTSAC 1 cut(s) 35
TseI GCWGC 4 cut(s) 51, 254, 398, 695
Tsp45I GTSAC 1 cut(s) 35
TspGWI ACGGA 1 cut(s) 575
TspRI CASTG 2 cut(s) 181, 789
XagI CCTNNNNNAGG 1 cut(s) 207
XbaI TCTAGA 1 cut(s) 263
XmnI GAANNNNTTC 1 cut(s) 241
XspI CTAG 1 cut(s) 264
ZraI GACGTC 1 cut(s) 40
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.