Rh2DG156700

Transcription initiation factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0016176
Physical Location & Seq
Reverse (-)
13102047 .. 13104821
2775 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG156700.1

Sequence Viewer

Length: 1380 bp
ATGAAGTGCCCGTACTGCTCGGCCGGACAAGGCCGTTGTGCGACAACGACCTCCCGTCGTTCAATCACGGAGTGCACCTCCTGCGGGCGCGTGGTGGAAGAGCGCCAAACCCAATTCCACCACCTCTTCCACCTACGCGCCCAAGACAACCCTCTCTGCCTCGTCACCTCCGACCTCCCAACCCCTCCTCCGCCACCCCAAAGCGACGACGTCGAAGACCCGTTCGAGCCCACGGGATTCATCACCGCCTTCTCCACCTGGTCCCTCGAGCCCAGCCCACTCTACCTCCGCTCCTCCCTCTCCTTCTCCGGCCACCTCGCGGAGCTCGAGCGCGTGCTCGAACTGTCCTCCGCCTGCGCCACCTCCTCCACCGTCGTGGTCGACAATCTCAGGGCGTATATGCAGATCATCGACGTGGCTTCGATTTTGGGATTGGATTATGACATTTCGGACCACGCGTTTCAGTTGTTCAGGGATTGTTGCTCCACTACTTGCTTGAGGAATCGGAGCGTTGAAGCCCTAGCTACTGCTGCTCTCGTCCAGGCCATTAGGGAGGCCCAAGAACCCAGAACCCTTCAGAAACTGGCAACTCATATTGGAGAGGTTGTTATCAACAAATGCTTCTGCACTCGCAGAAACCCCATTAGCATCTCTGCGGCTGCTATATATTTAGCCTGCCAGCTTGAAGACAAGCGAAAAACTCAGGCAGAGATTTGTAAGGTGACTGGTCTTACCGAAGTCACTCTCCGGAAAGTCTACAAGGAACTCTTGGAAAATTGGGATGATTTACTCCCATCTAATTATACTCCGGCTGTTCCTCCAGAAAGAGCATTTCCTACTACTGTAATCGCTTCAGGACGATCTTCAGCACCGAAAGCTGATTTACCTGAGCTACCAGTTTTTTTGAACAGAGAGAGGCAGCCGGAGATAAAACCTGACAAACCAGAGGGATTAGATATGAACGTTGAGCCAACCGAAGAAGAGGATTTTGACAGTAGAGTTAATTCTCGAGTTGCACAGTCAACAGTGGTGAACCTTTCAACACTTTTGTGGCAATCCCAGGTTCCATTTGGTACTTCTGGAAGTGCAGCAGTACTGAAGTCACAGAATATTGCCGTAGCAATGGACATCGATATGCCACAGAGTAACCAACACCTCGAGCACAAGTTGGACAAGGACACCAAGGGTTCTACTGGTAATCGAAATCCAACTTCAAGTTCGAGTTCACTTGCCAGGCAGTTTCGATACCCACCTTCCTCAGGTTCCTCTCCAAATGTTCAATATTCGCTTCCTCCAAAGCTTGGACCAGGTTATACTGAGCTTAGAGGTAGCAGGGGTCAAAATGGAAGTGAAAATTCCAAACAGAGTGGGGATGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000182 GO:0000976 GO:0000977 GO:0000979 GO:0000988 GO:0000990 GO:0000991 GO:0000993 GO:0001012 GO:0001046 GO:0001047 GO:0001067 GO:0001098 GO:0001099 GO:0001139 GO:0001173 GO:0001174 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009058 GO:0009059 GO:0009526 GO:0009527 GO:0009536 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0016043 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019867 GO:0019899 GO:0022607 GO:0031090 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031334 GO:0031967 GO:0031968 GO:0031975 GO:0032774 GO:0032991 GO:0032993 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0042170 GO:0043167 GO:0043169 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043254 GO:0043565 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0046872 GO:0046914 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051123 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0060260 GO:0060261 GO:0065003 GO:0065004 GO:0065007 GO:0070063 GO:0070897 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0098588 GO:0098805 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990114 GO:1990837 GO:2000112 GO:2000142 GO:2000144 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03022 ko05169 ko05203 map03022 map05169 map05203
Pfam Domains
Protein Families
TFIIB

Protein Analysis

459

Amino Acids

50.38

Weight (kDa)

5.63

Isoelectric Point (pI)

61.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TFIIB PF00382 132 - 208 2e-06 Transcription factor TFIIB repeat
TFIIB PF00382 196 - 258 1.4e-11 Transcription factor TFIIB repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016176)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G36650
fragaria_vesca FvH4_1g13530
malus_domestica MD15G1265100.v1.1
prunus_persica Prupe.7G152500_v2.0.a1
pyrus_communis pycom15g23090
rosa_chinensis RchiOBHm_Chr2g0101921
rosa_laevigata RLG00000017116
rosa_multiflora Rmu_sc0010781.1_g000003
rosa_roxburghii Rroxscaffold_2G00140950
rosa_rugosa Rorug02G0103100
rosa_samantha Rh2AG151100 Rh2BG156600 Rh2CG156400 Rh2DG156700
rosa_wichuraiana Rw2G011790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 213
AccB7I CCANNNNNTGG 1 cut(s) 1301
AccBSI CCGCTC 1 cut(s) 291
AccI GTMKAC 2 cut(s) 381, 756
AccII CGCG 5 cut(s) 90, 138, 320, 333, 458
AccIII TCCGGA 1 cut(s) 747
AciI CCGC 7 cut(s) 84, 191, 246, 289, 320, 351, 656
AclI AACGTT 1 cut(s) 963
AcoI YGGCCR 2 cut(s) 21, 310
AcsI RAATTY 1 cut(s) 1354
AcuI CTGAAG 4 cut(s) 560, 837, 849, 1118
AcyI GRCGYC 1 cut(s) 210
AdeI CACNNNGTG 1 cut(s) 72
AfaI GTAC 3 cut(s) 14, 1075, 1095
AfiI CCNNNNNNNGG 4 cut(s) 84, 319, 1259, 1301
AflIII ACRYGT 1 cut(s) 456
AgsI TTSAA 7 cut(s) 63, 515, 686, 907, 1041, 1215, 1280
AhdI GACNNNNNGTC 1 cut(s) 54
AjiI CACGTC 1 cut(s) 415
AjnI CCWGG 5 cut(s) 257, 540, 1059, 1232, 1306
AjuI GAANNNNNNNTTGG 2 cut(s) 1201, 1233
AleI CACNNNNGTG 2 cut(s) 374, 1048
AluBI AGCT 7 cut(s) 325, 524, 682, 878, 892, 1300, 1321
AluI AGCT 7 cut(s) 325, 524, 682, 878, 892, 1300, 1321
Alw21I GWGCWC 4 cut(s) 77, 327, 339, 1164
Alw44I GTGCAC 1 cut(s) 73
AlwNI CAGNNNCTG 1 cut(s) 583
Ama87I CYCGRG 4 cut(s) 266, 326, 1008, 1157
Aor13HI TCCGGA 1 cut(s) 747
AoxI GGCC 5 cut(s) 21, 31, 310, 543, 555
ApaLI GTGCAC 1 cut(s) 73
ApeKI GCWGC 4 cut(s) 530, 659, 919, 1088
ApoI RAATTY 1 cut(s) 1354
AspLEI GCGC 5 cut(s) 90, 105, 140, 333, 359
AspS9I GGNCC 4 cut(s) 261, 451, 556, 1304
AsuHPI GGTGA 4 cut(s) 157, 235, 733, 1042
AvaI CYCGRG 4 cut(s) 266, 326, 1008, 1157
AvaII GGWCC 3 cut(s) 261, 451, 1304
AxyI CCTNAGG 1 cut(s) 1258
BaeGI GKGCMC 2 cut(s) 11, 77
BanII GRGCYC 3 cut(s) 231, 273, 327
BarI GAAGNNNNNNTAC 1 cut(s) 28
BbsI GAAGAC 2 cut(s) 222, 693
Bbv12I GWGCWC 4 cut(s) 77, 327, 339, 1164
BbvI GCAGC 4 cut(s) 517, 646, 931, 1100
BccI CCATC 1 cut(s) 802
BceAI ACGGC 2 cut(s) 18, 1100
BciT130I CCWGG 5 cut(s) 259, 542, 1061, 1234, 1308
BfaI CTAG 1 cut(s) 521
BfoI RGCGCY 1 cut(s) 106
BisI GCNGC 5 cut(s) 531, 657, 660, 920, 1089
BlsI GCNGC 5 cut(s) 532, 658, 661, 921, 1090
BmcAI AGTACT 1 cut(s) 1095
Bme1390I CCNGG 5 cut(s) 259, 542, 1061, 1234, 1308
Bme18I GGWCC 3 cut(s) 261, 451, 1304
BmeRI GACNNNNNGTC 1 cut(s) 54
BmeT110I CYCGRG 4 cut(s) 266, 326, 1008, 1157
BmgBI CACGTC 1 cut(s) 415
BmgT120I GGNCC 4 cut(s) 261, 451, 556, 1304
BmiI GGNNCC 3 cut(s) 263, 1065, 1264
BmrFI CCNGG 5 cut(s) 259, 542, 1061, 1234, 1308
BmsI GCATC 2 cut(s) 657, 1363
BpiI GAAGAC 2 cut(s) 222, 693
BplI GAGNNNNNCTC 2 cut(s) 62, 94
BpmI CTGGAG 1 cut(s) 804
Bpu10I CCTNAGC 1 cut(s) 888
BpuEI CTTGAG 1 cut(s) 517
Bsa29I ATCGAT 1 cut(s) 1131
BsaHI GRCGYC 1 cut(s) 210
BsaJI CCNNGG 3 cut(s) 231, 1059, 1182
BsaWI WCCGGW 1 cut(s) 747
BsaXI ACNNNNNCTCC 8 cut(s) 172, 202, 270, 275, 300, 305, 591, 621
Bsc4I CCNNNNNNNGG 4 cut(s) 84, 319, 1259, 1301
Bse1I ACTGG 4 cut(s) 588, 730, 896, 1198
Bse21I CCTNAGG 1 cut(s) 1258
Bse3DI GCAATG 1 cut(s) 1128
BseAI TCCGGA 1 cut(s) 747
BseBI CCWGG 5 cut(s) 259, 542, 1061, 1234, 1308
BseCI ATCGAT 1 cut(s) 1131
BseDI CCNNGG 3 cut(s) 231, 1059, 1182
BseGI GGATG 2 cut(s) 787, 1378
BseLI CCNNNNNNNGG 4 cut(s) 84, 319, 1259, 1301
BseMI GCAATG 1 cut(s) 1128
BseMII CTCAG 5 cut(s) 403, 716, 879, 1272, 1308
BseNI ACTGG 4 cut(s) 588, 730, 896, 1198
BseRI GAGGAG 3 cut(s) 177, 283, 355
BseSI GKGCMC 2 cut(s) 11, 77
BseX3I CGGCCG 1 cut(s) 21
BseXI GCAGC 4 cut(s) 517, 646, 931, 1100
BseYI CCCAGC 1 cut(s) 272
BsgI GTGCAG 2 cut(s) 610, 1107
Bsh1236I CGCG 5 cut(s) 90, 138, 320, 333, 458
Bsh1285I CGRYCG 1 cut(s) 24
BshFI GGCC 5 cut(s) 23, 33, 312, 545, 557
BshVI ATCGAT 1 cut(s) 1131
BsiEI CGRYCG 1 cut(s) 24
BsiHKAI GWGCWC 4 cut(s) 77, 327, 339, 1164
BsiHKCI CYCGRG 4 cut(s) 266, 326, 1008, 1157
BsiSI CCGG 5 cut(s) 24, 309, 748, 809, 923
BslFI GGGAC 1 cut(s) 247
BslI CCNNNNNNNGG 4 cut(s) 84, 319, 1259, 1301
BsmFI GGGAC 1 cut(s) 247
BsnI GGCC 5 cut(s) 23, 33, 312, 545, 557
BsoBI CYCGRG 4 cut(s) 266, 326, 1008, 1157
Bsp1286I GDGCHC 7 cut(s) 11, 77, 231, 273, 327, 339, 1164
Bsp13I TCCGGA 1 cut(s) 747
Bsp143I GATC 2 cut(s) 405, 860
BspACI CCGC 7 cut(s) 84, 191, 246, 289, 320, 351, 656
BspANI GGCC 5 cut(s) 23, 33, 312, 545, 557
BspCNI CTCAG 5 cut(s) 402, 715, 880, 1271, 1309
BspDI ATCGAT 1 cut(s) 1131
BspEI TCCGGA 1 cut(s) 747
BspFNI CGCG 5 cut(s) 90, 138, 320, 333, 458
BspLI GGNNCC 3 cut(s) 263, 1065, 1264
BspQI GCTCTTC 1 cut(s) 93
BsrBI CCGCTC 1 cut(s) 291
BsrDI GCAATG 1 cut(s) 1128
BsrI ACTGG 4 cut(s) 588, 730, 896, 1198
BssECI CCNNGG 3 cut(s) 231, 1059, 1182
BssMI GATC 2 cut(s) 405, 860
BssNI GRCGYC 1 cut(s) 210
BssT1I CCWWGG 1 cut(s) 1182
Bst2UI CCWGG 5 cut(s) 259, 542, 1061, 1234, 1308
Bst4CI ACNGT 6 cut(s) 345, 373, 844, 995, 1020, 1027
Bst6I CTCTTC 3 cut(s) 93, 131, 975
BstACI GRCGYC 1 cut(s) 210
BstAPI GCANNNNNTGC 1 cut(s) 81
BstC8I GCNNGC 5 cut(s) 86, 335, 355, 676, 680
BstDEI CTNAG 6 cut(s) 389, 702, 888, 1258, 1317, 1322
BstDSI CCRYGG 1 cut(s) 231
BstENI CCTNNNNNAGG 1 cut(s) 1257
BstF5I GGATG 2 cut(s) 787, 1378
BstFNI CGCG 5 cut(s) 90, 138, 320, 333, 458
BstH2I RGCGCY 1 cut(s) 106
BstHHI GCGC 5 cut(s) 90, 105, 140, 333, 359
BstKTI GATC 2 cut(s) 408, 863
BstMBI GATC 2 cut(s) 405, 860
BstMCI CGRYCG 1 cut(s) 24
BstMWI GCNNNNNNNGC 4 cut(s) 15, 81, 530, 875
BstNI CCWGG 5 cut(s) 259, 542, 1061, 1234, 1308
BstSCI CCNGG 5 cut(s) 257, 540, 1059, 1232, 1306
BstSLI GKGCMC 2 cut(s) 11, 77
BstUI CGCG 5 cut(s) 90, 138, 320, 333, 458
BstV1I GCAGC 4 cut(s) 517, 646, 931, 1100
BstV2I GAAGAC 2 cut(s) 222, 693
BstXI CCANNNNNNTGG 1 cut(s) 376
BstZI CGGCCG 1 cut(s) 21
Bsu15I ATCGAT 1 cut(s) 1131
Bsu36I CCTNAGG 1 cut(s) 1258
BsuRI GGCC 5 cut(s) 23, 33, 312, 545, 557
BsuTUI ATCGAT 1 cut(s) 1131
BtgI CCRYGG 1 cut(s) 231
BtrI CACGTC 1 cut(s) 415
BtsCI GGATG 2 cut(s) 787, 1378
BtsIMutI CAGTG 1 cut(s) 1032
Cac8I GCNNGC 5 cut(s) 86, 335, 355, 676, 680
CaiI CAGNNNCTG 1 cut(s) 583
CfoI GCGC 5 cut(s) 90, 105, 140, 333, 359
Cfr13I GGNCC 4 cut(s) 261, 451, 556, 1304
ClaI ATCGAT 1 cut(s) 1131
CsiI ACCWGGT 2 cut(s) 257, 1306
Csp6I GTAC 3 cut(s) 13, 1074, 1094
CspCI CAANNNNNGTGG 1 cut(s) 1348
CviQI GTAC 3 cut(s) 13, 1074, 1094
DdeI CTNAG 6 cut(s) 389, 702, 888, 1258, 1317, 1322
DpnI GATC 2 cut(s) 407, 862
DpnII GATC 2 cut(s) 405, 860
DraIII CACNNNGTG 1 cut(s) 72
DriI GACNNNNNGTC 1 cut(s) 54
EaeI YGGCCR 2 cut(s) 21, 310
EagI CGGCCG 1 cut(s) 21
Eam1104I CTCTTC 3 cut(s) 93, 131, 975
Eam1105I GACNNNNNGTC 1 cut(s) 54
EarI CTCTTC 3 cut(s) 93, 131, 975
EciI GGCGGA 2 cut(s) 180, 340
Ecl136II GAGCTC 1 cut(s) 325
EclXI CGGCCG 1 cut(s) 21
Eco130I CCWWGG 1 cut(s) 1182
Eco24I GRGCYC 3 cut(s) 231, 273, 327
Eco47I GGWCC 3 cut(s) 261, 451, 1304
Eco52I CGGCCG 1 cut(s) 21
Eco53kI GAGCTC 1 cut(s) 325
Eco57I CTGAAG 4 cut(s) 560, 837, 849, 1118
Eco81I CCTNAGG 1 cut(s) 1258
Eco88I CYCGRG 4 cut(s) 266, 326, 1008, 1157
EcoICRI GAGCTC 1 cut(s) 325
EcoNI CCTNNNNNAGG 1 cut(s) 1257
EcoRII CCWGG 5 cut(s) 257, 540, 1059, 1232, 1306
EcoT14I CCWWGG 1 cut(s) 1182
EcoT38I GRGCYC 3 cut(s) 231, 273, 327
ErhI CCWWGG 1 cut(s) 1182
FalI AAGNNNNNCTT 2 cut(s) 752, 784
FaqI GGGAC 1 cut(s) 247
FauI CCCGC 1 cut(s) 77
FblI GTMKAC 2 cut(s) 381, 756
Fnu4HI GCNGC 5 cut(s) 531, 657, 660, 920, 1089
FokI GGATG 1 cut(s) 794
FriOI GRGCYC 3 cut(s) 231, 273, 327
Fsp4HI GCNGC 5 cut(s) 531, 657, 660, 920, 1089
FspBI CTAG 1 cut(s) 521
GlaI GCGC 5 cut(s) 89, 104, 139, 332, 358
GluI GCNGC 5 cut(s) 531, 657, 660, 920, 1089
GsaI CCCAGC 1 cut(s) 276
GsuI CTGGAG 1 cut(s) 804
HaeII RGCGCY 1 cut(s) 106
HaeIII GGCC 5 cut(s) 23, 33, 312, 545, 557
HapII CCGG 5 cut(s) 24, 309, 748, 809, 923
HhaI GCGC 5 cut(s) 90, 105, 140, 333, 359
Hin1I GRCGYC 1 cut(s) 210
Hin6I GCGC 5 cut(s) 88, 103, 138, 331, 357
HinP1I GCGC 5 cut(s) 88, 103, 138, 331, 357
HincII GTYRAC 2 cut(s) 382, 1023
HindII GTYRAC 2 cut(s) 382, 1023
HindIII AAGCTT 1 cut(s) 1298
HinfI GANTC 2 cut(s) 237, 502
HpaII CCGG 5 cut(s) 24, 309, 748, 809, 923
HphI GGTGA 4 cut(s) 157, 235, 733, 1042
Hpy166II GTNNAC 6 cut(s) 75, 382, 757, 1023, 1033, 1226
Hpy188I TCNGA 4 cut(s) 172, 451, 507, 579
Hpy188III TCNNGA 5 cut(s) 748, 821, 855, 1008, 1080
Hpy8I GTNNAC 6 cut(s) 75, 382, 757, 1023, 1033, 1226
Hpy99I CGWCG 6 cut(s) 60, 209, 212, 215, 377, 416
HpyAV CCTTC 4 cut(s) 259, 313, 584, 1263
HpyCH4III ACNGT 6 cut(s) 345, 373, 844, 995, 1020, 1027
HpyCH4IV ACGT 3 cut(s) 210, 414, 963
HpyCH4V TGCA 5 cut(s) 75, 403, 627, 1016, 1088
HpyF10VI GCNNNNNNNGC 4 cut(s) 15, 81, 530, 875
HpyF3I CTNAG 6 cut(s) 389, 702, 888, 1258, 1317, 1322
HpySE526I ACGT 3 cut(s) 210, 414, 963
Hsp92I GRCGYC 1 cut(s) 210
HspAI GCGC 5 cut(s) 88, 103, 138, 331, 357
Kpn2I TCCGGA 1 cut(s) 747
Kzo9I GATC 2 cut(s) 405, 860
LguI GCTCTTC 1 cut(s) 93
LmnI GCTCC 4 cut(s) 296, 322, 488, 507
Lsp1109I GCAGC 4 cut(s) 517, 646, 931, 1100
LweI GCATC 2 cut(s) 657, 1363
MabI ACCWGGT 2 cut(s) 257, 1306
MaeI CTAG 1 cut(s) 521
MaeII ACGT 3 cut(s) 210, 414, 963
MaeIII GTNAC 5 cut(s) 163, 721, 739, 1101, 1145
MalI GATC 2 cut(s) 407, 862
MbiI CCGCTC 1 cut(s) 291
MboI GATC 2 cut(s) 405, 860
MboII GAAGA 7 cut(s) 110, 118, 227, 698, 855, 989, 992
MhlI GDGCHC 7 cut(s) 11, 77, 231, 273, 327, 339, 1164
MluCI AATT 5 cut(s) 113, 775, 799, 1003, 1354
MluI ACGCGT 1 cut(s) 456
MmeI TCCRAC 3 cut(s) 195, 1149, 1232
MroI TCCGGA 1 cut(s) 747
MseI TTAA 1 cut(s) 1002
MslI CAYNNNNRTG 4 cut(s) 374, 413, 1048, 1133
MspI CCGG 5 cut(s) 24, 309, 748, 809, 923
MspR9I CCNGG 5 cut(s) 259, 542, 1061, 1234, 1308
MvaI CCWGG 5 cut(s) 259, 542, 1061, 1234, 1308
MvnI CGCG 5 cut(s) 90, 138, 320, 333, 458
MwoI GCNNNNNNNGC 4 cut(s) 15, 81, 530, 875
NdeII GATC 2 cut(s) 405, 860
NlaIV GGNNCC 3 cut(s) 263, 1065, 1264
NmuCI GTSAC 4 cut(s) 163, 721, 739, 1101
OliI CACNNNNGTG 2 cut(s) 374, 1048
PaeR7I CTCGAG 4 cut(s) 266, 326, 1008, 1157
PciSI GCTCTTC 1 cut(s) 93
PcsI WCGNNNNNNNCGW 3 cut(s) 168, 324, 455
PfeI GAWTC 2 cut(s) 237, 502
PflFI GACNNNGTC 1 cut(s) 209
PflMI CCANNNNNTGG 1 cut(s) 1301
PkrI GCNGC 5 cut(s) 532, 658, 661, 921, 1090
Psp124BI GAGCTC 1 cut(s) 327
Psp1406I AACGTT 1 cut(s) 963
Psp6I CCWGG 5 cut(s) 257, 540, 1059, 1232, 1306
PspFI CCCAGC 1 cut(s) 272
PspGI CCWGG 5 cut(s) 257, 540, 1059, 1232, 1306
PspN4I GGNNCC 3 cut(s) 263, 1065, 1264
PspPI GGNCC 4 cut(s) 261, 451, 556, 1304
PspXI VCTCGAGB 3 cut(s) 266, 326, 1157
PstNI CAGNNNCTG 1 cut(s) 583
PsyI GACNNNGTC 1 cut(s) 209
RsaI GTAC 3 cut(s) 14, 1075, 1095
RsaNI GTAC 3 cut(s) 13, 1074, 1094
RseI CAYNNNNRTG 4 cut(s) 374, 413, 1048, 1133
SacI GAGCTC 1 cut(s) 327
SalI GTCGAC 1 cut(s) 380
SapI GCTCTTC 1 cut(s) 93
SaqAI TTAA 1 cut(s) 1002
SatI GCNGC 5 cut(s) 531, 657, 660, 920, 1089
Sau3AI GATC 2 cut(s) 405, 860
Sau96I GGNCC 4 cut(s) 261, 451, 556, 1304
ScaI AGTACT 1 cut(s) 1095
ScrFI CCNGG 5 cut(s) 259, 542, 1061, 1234, 1308
SduI GDGCHC 7 cut(s) 11, 77, 231, 273, 327, 339, 1164
SexAI ACCWGGT 2 cut(s) 257, 1306
SfaNI GCATC 2 cut(s) 657, 1363
Sfr274I CTCGAG 4 cut(s) 266, 326, 1008, 1157
SinI GGWCC 3 cut(s) 261, 451, 1304
SlaI CTCGAG 4 cut(s) 266, 326, 1008, 1157
SmiMI CAYNNNNRTG 4 cut(s) 374, 413, 1048, 1133
SmlI CTYRAG 5 cut(s) 266, 326, 496, 1008, 1157
SmoI CTYRAG 5 cut(s) 266, 326, 496, 1008, 1157
Sse9I AATT 5 cut(s) 113, 775, 799, 1003, 1354
SsiI CCGC 7 cut(s) 84, 191, 246, 289, 320, 351, 656
SspI AATATT 2 cut(s) 1111, 1283
SspMI CTAG 1 cut(s) 521
SstI GAGCTC 1 cut(s) 327
StyD4I CCNGG 5 cut(s) 257, 540, 1059, 1232, 1306
StyI CCWWGG 1 cut(s) 1182
TaaI ACNGT 6 cut(s) 345, 373, 844, 995, 1020, 1027
TaiI ACGT 3 cut(s) 213, 417, 966
TasI AATT 5 cut(s) 113, 775, 799, 1003, 1354
TatI WGTACW 1 cut(s) 1093
TauI GCSGC 1 cut(s) 659
TfiI GAWTC 2 cut(s) 237, 502
Tru1I TTAA 1 cut(s) 1002
Tru9I TTAA 1 cut(s) 1002
TscAI CASTG 1 cut(s) 1032
TseFI GTSAC 4 cut(s) 163, 721, 739, 1101
TseI GCWGC 4 cut(s) 530, 659, 919, 1088
Tsp45I GTSAC 4 cut(s) 163, 721, 739, 1101
TspDTI ATGAA 3 cut(s) 17, 229, 974
TspGWI ACGGA 1 cut(s) 83
TspRI CASTG 1 cut(s) 1032
Tth111I GACNNNGTC 1 cut(s) 209
Van91I CCANNNNNTGG 1 cut(s) 1301
VneI GTGCAC 1 cut(s) 73
VpaK11BI GGWCC 3 cut(s) 261, 451, 1304
XagI CCTNNNNNAGG 1 cut(s) 1257
XapI RAATTY 1 cut(s) 1354
XcmI CCANNNNNNNNNTGG 1 cut(s) 1067
XhoI CTCGAG 4 cut(s) 266, 326, 1008, 1157
XmiI GTMKAC 2 cut(s) 381, 756
XspI CTAG 1 cut(s) 521
ZraI GACGTC 1 cut(s) 211
ZrmI AGTACT 1 cut(s) 1095
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.