FvH4_1g14040

BES1 BZR1 homolog protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0013883
Physical Location & Seq
Reverse (-)
7747489 .. 7750287
2799 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g14040.t1

Sequence Viewer

Length: 969 bp
ATGACCGGCGGTGGGTCATCGGGGAGGTTACCGACATGGAAGGAGAGAGAGAACAACAAGAGGAGGGAGCGGAGGAGAAGAGCCATTGCTGCTAAGATATACTCTGGCCTCAGAGCTCAGGGCAGCTACAAGCTTCCTAAGCACTGTGACAACAACGAGGTCTTGAAAGCTCTATGTGCGGAAGCTGGTTGGGTCGTTGAAGAAGATGGCACTACTTACCGCAAGGGATGCAAGCCACCAATTGAAATTGCAGGCACTCCCACAAATATGAGTGCGTGTTCATCAATGCAACCAAGCCCACAGTCCTCATCTTTCCCTAGTCCTGTACCATCCTACCACGCCAGTCCATCATCCTCCTCCTTCCCAAGCCCGACTCGTTTTGACGGAAACCCTTCCTCTTACCATCAAAACCCGTCGTCTTACCTTCTTCCATTCCTGCATAACTTGGCTTCCATTCCTCCAAATCTTCCTCCTCTTAGAATTTCCAACAGTGCTCCTGTTACACCACCTCTTTCTTCCCCAACTTCTAGAGGGTCGAAGCGGAAACCTGACTGGGAATCCCTGACTAATGGCTGCATTAACTCCTTGCGCCATCCCCTTTTTGCAGCTTCTGCCCCTTCTAGTCCTACTCGGCGCCACCATCTTGCACCTGCCACAATTCCAGAATGTGACGAGTCTGATGCTTCCACAGTGGACTCTGGTCGTTGGGTGAGTTTCCAGACAGGGGTACCTTCAGTAGCTCCACCTTCGCCCACATTTAATCTTATGAAACCAGTGGCTGAGCAGAATGTTCTTCGGCAGACTGTTGGGCATGGGGGGATTGGTTGGGGGAACCCTGGGGAGAGGGCACGAGGCTCTGAGTTTGAGTTTGAGAGTGGCAGACTGAAAGCTTGGGAGGGTGAGAGAATACACGAGGTTGGAGTGGAAGACCTGGAGCTTACACTTGGGAATGGGAAGATGCATAGTTAA

Protein Analysis

323

Amino Acids

34.86

Weight (kDa)

9.16

Isoelectric Point (pI)

75.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BES1_N PF05687 6 - 149 9.8e-66 BES1/BZR1 plant transcription factor, N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013883)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G36780
fragaria_vesca FvH4_1g14040
malus_domestica MD15G1267600.v1.1 MD15G1267800.v1.1
prunus_persica Prupe.7G149000_v2.0.a1
pyrus_communis pycom02g12160 pycom15g23310
rosa_chinensis RchiOBHm_Chr2g0102631
rosa_laevigata RLG00000017158
rosa_multiflora Rmu_sc0003852.1_g000007
rosa_roxburghii Rroxscaffold_2G00140430
rosa_rugosa Rorug02G0108300
rosa_samantha Rh2AG157000 Rh2BG163300 Rh2CG162400 Rh2DG162200
rosa_wichuraiana Rw2G012180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 658
Acc36I ACCTGC 1 cut(s) 658
Acc65I GGTACC 1 cut(s) 727
AccB1I GGYRCC 2 cut(s) 633, 727
AccBSI CCGCTC 1 cut(s) 70
AciI CCGC 5 cut(s) 9, 70, 179, 220, 541
AcsI RAATTY 1 cut(s) 480
AcuI CTGAAG 1 cut(s) 717
AcyI GRCGYC 1 cut(s) 634
AfaI GTAC 2 cut(s) 327, 729
AfiI CCNNNNNNNGG 2 cut(s) 12, 724
AgsI TTSAA 3 cut(s) 166, 200, 245
AjnI CCWGG 2 cut(s) 835, 930
AluBI AGCT 9 cut(s) 116, 126, 133, 170, 185, 608, 740, 890, 937
AluI AGCT 9 cut(s) 116, 126, 133, 170, 185, 608, 740, 890, 937
Alw21I GWGCWC 2 cut(s) 118, 496
AlwNI CAGNNNCTG 2 cut(s) 611, 779
AoxI GGCC 1 cut(s) 106
ApeKI GCWGC 4 cut(s) 89, 123, 573, 605
ApoI RAATTY 1 cut(s) 480
Asp700I GAANNNNTTC 1 cut(s) 391
Asp718I GGTACC 1 cut(s) 727
AspLEI GCGC 2 cut(s) 591, 636
AsuHPI GGTGA 2 cut(s) 721, 911
BaeGI GKGCMC 1 cut(s) 850
BaeI ACNNNNGTAYC 2 cut(s) 711, 744
BanI GGYRCC 2 cut(s) 633, 727
BanII GRGCYC 1 cut(s) 118
BauI CACGAG 2 cut(s) 849, 911
BbsI GAAGAC 1 cut(s) 933
Bbv12I GWGCWC 2 cut(s) 118, 496
BbvI GCAGC 4 cut(s) 76, 135, 560, 617
BccI CCATC 6 cut(s) 200, 337, 355, 411, 600, 648
BcgI CGANNNNNNTGC 2 cut(s) 662, 696
BciT130I CCWGG 2 cut(s) 837, 932
BfaI CTAG 3 cut(s) 318, 528, 621
BfoI RGCGCY 1 cut(s) 637
BfuAI ACCTGC 1 cut(s) 658
BisI GCNGC 4 cut(s) 90, 124, 574, 606
BlpI GCTNAGC 1 cut(s) 780
BlsI GCNGC 4 cut(s) 91, 125, 575, 607
Bme1390I CCNGG 2 cut(s) 837, 932
BmiI GGNNCC 3 cut(s) 635, 729, 833
BmrFI CCNGG 2 cut(s) 837, 932
BmrI ACTGGG 1 cut(s) 562
BmsI GCATC 3 cut(s) 218, 670, 948
BmuI ACTGGG 1 cut(s) 562
BoxI GACNNNNGTC 1 cut(s) 699
BpiI GAAGAC 1 cut(s) 933
BpmI CTGGAG 1 cut(s) 953
Bpu10I CCTNAGC 2 cut(s) 117, 138
Bpu1102I GCTNAGC 1 cut(s) 780
BsaHI GRCGYC 1 cut(s) 634
BsaJI CCNNGG 2 cut(s) 835, 836
Bsc4I CCNNNNNNNGG 2 cut(s) 12, 724
Bse118I RCCGGY 1 cut(s) 5
Bse1I ACTGG 3 cut(s) 342, 557, 773
Bse3DI GCAATG 1 cut(s) 84
BseBI CCWGG 2 cut(s) 837, 932
BseDI CCNNGG 2 cut(s) 835, 836
BseGI GGATG 4 cut(s) 233, 329, 350, 592
BseLI CCNNNNNNNGG 2 cut(s) 12, 724
BseMI GCAATG 1 cut(s) 84
BseMII CTCAG 4 cut(s) 124, 131, 771, 849
BseNI ACTGG 3 cut(s) 342, 557, 773
BseRI GAGGAG 4 cut(s) 76, 88, 346, 462
BseSI GKGCMC 1 cut(s) 850
BseXI GCAGC 4 cut(s) 76, 135, 560, 617
BshFI GGCC 1 cut(s) 108
BshNI GGYRCC 2 cut(s) 633, 727
BsiHKAI GWGCWC 2 cut(s) 118, 496
BsiSI CCGG 1 cut(s) 6
BslI CCNNNNNNNGG 2 cut(s) 12, 724
BsnI GGCC 1 cut(s) 108
Bsp1286I GDGCHC 3 cut(s) 118, 496, 850
Bsp1720I GCTNAGC 1 cut(s) 780
BspACI CCGC 5 cut(s) 9, 70, 179, 220, 541
BspANI GGCC 1 cut(s) 108
BspCNI CTCAG 4 cut(s) 123, 130, 772, 850
BspLI GGNNCC 3 cut(s) 635, 729, 833
BspMI ACCTGC 1 cut(s) 658
BspQI GCTCTTC 1 cut(s) 73
BspT107I GGYRCC 2 cut(s) 633, 727
BsrBI CCGCTC 1 cut(s) 70
BsrDI GCAATG 1 cut(s) 84
BsrFI RCCGGY 1 cut(s) 5
BsrI ACTGG 3 cut(s) 342, 557, 773
BssAI RCCGGY 1 cut(s) 5
BssECI CCNNGG 2 cut(s) 835, 836
BssNI GRCGYC 1 cut(s) 634
BssSI CACGAG 2 cut(s) 849, 911
Bst2BI CACGAG 2 cut(s) 849, 911
Bst2UI CCWGG 2 cut(s) 837, 932
Bst4CI ACNGT 5 cut(s) 146, 303, 491, 691, 805
Bst6I CTCTTC 1 cut(s) 73
BstACI GRCGYC 1 cut(s) 634
BstAPI GCANNNNNTGC 2 cut(s) 228, 611
BstC8I GCNNGC 2 cut(s) 233, 253
BstDEI CTNAG 7 cut(s) 93, 110, 117, 138, 476, 780, 858
BstEII GGTNACC 1 cut(s) 27
BstF5I GGATG 4 cut(s) 233, 329, 350, 592
BstH2I RGCGCY 1 cut(s) 637
BstHHI GCGC 2 cut(s) 591, 636
BstMWI GCNNNNNNNGC 5 cut(s) 89, 139, 176, 228, 611
BstNI CCWGG 2 cut(s) 837, 932
BstPAI GACNNNNGTC 1 cut(s) 699
BstPI GGTNACC 1 cut(s) 27
BstSCI CCNGG 2 cut(s) 835, 930
BstSLI GKGCMC 1 cut(s) 850
BstV1I GCAGC 4 cut(s) 76, 135, 560, 617
BstV2I GAAGAC 1 cut(s) 933
BsuRI GGCC 1 cut(s) 108
BtsCI GGATG 4 cut(s) 233, 329, 350, 592
BtsIMutI CAGTG 4 cut(s) 142, 496, 696, 780
BveI ACCTGC 1 cut(s) 658
Cac8I GCNNGC 2 cut(s) 233, 253
CaiI CAGNNNCTG 2 cut(s) 611, 779
CfoI GCGC 2 cut(s) 591, 636
Cfr10I RCCGGY 1 cut(s) 5
Csp6I GTAC 2 cut(s) 326, 728
CviAII CATG 2 cut(s) 36, 812
CviQI GTAC 2 cut(s) 326, 728
DdeI CTNAG 7 cut(s) 93, 110, 117, 138, 476, 780, 858
DinI GGCGCC 1 cut(s) 635
Eam1104I CTCTTC 1 cut(s) 73
EarI CTCTTC 1 cut(s) 73
Ecl136II GAGCTC 1 cut(s) 116
Eco24I GRGCYC 1 cut(s) 118
Eco53kI GAGCTC 1 cut(s) 116
Eco57I CTGAAG 1 cut(s) 717
Eco91I GGTNACC 1 cut(s) 27
EcoICRI GAGCTC 1 cut(s) 116
EcoO65I GGTNACC 1 cut(s) 27
EcoRII CCWGG 2 cut(s) 835, 930
EcoT22I ATGCAT 1 cut(s) 963
EcoT38I GRGCYC 1 cut(s) 118
EgeI GGCGCC 1 cut(s) 635
EheI GGCGCC 1 cut(s) 635
FaeI CATG 2 cut(s) 39, 815
FaiI YATR 8 cut(s) 37, 100, 175, 269, 441, 767, 813, 963
FatI CATG 2 cut(s) 35, 811
Fnu4HI GCNGC 4 cut(s) 90, 124, 574, 606
FokI GGATG 4 cut(s) 240, 316, 337, 579
FriOI GRGCYC 1 cut(s) 118
Fsp4HI GCNGC 4 cut(s) 90, 124, 574, 606
FspBI CTAG 3 cut(s) 318, 528, 621
GlaI GCGC 2 cut(s) 590, 635
GluI GCNGC 4 cut(s) 90, 124, 574, 606
GsuI CTGGAG 1 cut(s) 953
HaeII RGCGCY 1 cut(s) 637
HaeIII GGCC 1 cut(s) 108
HapII CCGG 1 cut(s) 6
HhaI GCGC 2 cut(s) 591, 636
Hin1I GRCGYC 1 cut(s) 634
Hin1II CATG 2 cut(s) 39, 815
Hin6I GCGC 2 cut(s) 589, 634
HinP1I GCGC 2 cut(s) 589, 634
HindIII AAGCTT 2 cut(s) 131, 888
HinfI GANTC 4 cut(s) 373, 557, 674, 695
HpaII CCGG 1 cut(s) 6
HphI GGTGA 2 cut(s) 721, 911
Hpy166II GTNNAC 1 cut(s) 694
Hpy188I TCNGA 3 cut(s) 113, 679, 859
Hpy188III TCNNGA 4 cut(s) 163, 528, 662, 718
Hpy8I GTNNAC 1 cut(s) 694
Hpy99I CGWCG 1 cut(s) 418
HpyAV CCTTC 7 cut(s) 34, 370, 402, 434, 627, 741, 756
HpyCH4III ACNGT 5 cut(s) 146, 303, 491, 691, 805
HpyCH4V TGCA 8 cut(s) 231, 251, 289, 439, 576, 605, 647, 961
HpyF10VI GCNNNNNNNGC 5 cut(s) 89, 139, 176, 228, 611
HpyF3I CTNAG 7 cut(s) 93, 110, 117, 138, 476, 780, 858
Hsp92I GRCGYC 1 cut(s) 634
Hsp92II CATG 2 cut(s) 39, 815
HspAI GCGC 2 cut(s) 589, 634
KasI GGCGCC 1 cut(s) 633
KpnI GGTACC 1 cut(s) 731
LguI GCTCTTC 1 cut(s) 73
LmnI GCTCC 4 cut(s) 67, 499, 745, 934
Lsp1109I GCAGC 4 cut(s) 76, 135, 560, 617
LweI GCATC 3 cut(s) 218, 670, 948
MaeI CTAG 3 cut(s) 318, 528, 621
MaeIII GTNAC 4 cut(s) 27, 146, 499, 668
MbiI CCGCTC 1 cut(s) 70
MboII GAAGA 9 cut(s) 90, 212, 215, 419, 458, 507, 785, 938, 967
MfeI CAATTG 1 cut(s) 240
MhlI GDGCHC 3 cut(s) 118, 496, 850
MluCI AATT 4 cut(s) 240, 246, 480, 657
Mly113I GGCGCC 1 cut(s) 634
MlyI GAGTC 3 cut(s) 367, 683, 689
MmeI TCCRAC 2 cut(s) 510, 898
Mph1103I ATGCAT 1 cut(s) 963
MroXI GAANNNNTTC 1 cut(s) 391
MseI TTAA 3 cut(s) 579, 759, 967
MslI CAYNNNNRTG 1 cut(s) 266
MspI CCGG 1 cut(s) 6
MspR9I CCNGG 2 cut(s) 837, 932
MunI CAATTG 1 cut(s) 240
MvaI CCWGG 2 cut(s) 837, 932
MwoI GCNNNNNNNGC 5 cut(s) 89, 139, 176, 228, 611
NarI GGCGCC 1 cut(s) 634
NlaIII CATG 2 cut(s) 39, 815
NlaIV GGNNCC 3 cut(s) 635, 729, 833
NmeAIII GCCGAG 1 cut(s) 610
NmuCI GTSAC 2 cut(s) 146, 668
NsiI ATGCAT 1 cut(s) 963
PaqCI CACCTGC 1 cut(s) 658
PasI CCCWGGG 1 cut(s) 836
PciSI GCTCTTC 1 cut(s) 73
PdmI GAANNNNTTC 1 cut(s) 391
PfeI GAWTC 1 cut(s) 557
PkrI GCNGC 4 cut(s) 91, 125, 575, 607
PleI GAGTC 3 cut(s) 367, 682, 689
PluTI GGCGCC 1 cut(s) 637
PpsI GAGTC 3 cut(s) 367, 682, 689
PshAI GACNNNNGTC 1 cut(s) 699
Psp124BI GAGCTC 1 cut(s) 118
Psp6I CCWGG 2 cut(s) 835, 930
PspEI GGTNACC 1 cut(s) 27
PspGI CCWGG 2 cut(s) 835, 930
PspN4I GGNNCC 3 cut(s) 635, 729, 833
PstNI CAGNNNCTG 2 cut(s) 611, 779
RsaI GTAC 2 cut(s) 327, 729
RsaNI GTAC 2 cut(s) 326, 728
RseI CAYNNNNRTG 1 cut(s) 266
SacI GAGCTC 1 cut(s) 118
SapI GCTCTTC 1 cut(s) 73
SaqAI TTAA 3 cut(s) 579, 759, 967
SatI GCNGC 4 cut(s) 90, 124, 574, 606
SchI GAGTC 3 cut(s) 367, 683, 689
ScrFI CCNGG 2 cut(s) 837, 932
SduI GDGCHC 3 cut(s) 118, 496, 850
SfaNI GCATC 3 cut(s) 218, 670, 948
SfoI GGCGCC 1 cut(s) 635
SmiMI CAYNNNNRTG 1 cut(s) 266
Sse9I AATT 4 cut(s) 240, 246, 480, 657
SsiI CCGC 5 cut(s) 9, 70, 179, 220, 541
SspDI GGCGCC 1 cut(s) 633
SspMI CTAG 3 cut(s) 318, 528, 621
SstI GAGCTC 1 cut(s) 118
StyD4I CCNGG 2 cut(s) 835, 930
TaaI ACNGT 5 cut(s) 146, 303, 491, 691, 805
TaqI TCGA 1 cut(s) 536
TasI AATT 4 cut(s) 240, 246, 480, 657
TfiI GAWTC 1 cut(s) 557
Tru1I TTAA 3 cut(s) 579, 759, 967
Tru9I TTAA 3 cut(s) 579, 759, 967
TscAI CASTG 4 cut(s) 149, 496, 696, 780
TseFI GTSAC 2 cut(s) 146, 668
TseI GCWGC 4 cut(s) 89, 123, 573, 605
Tsp45I GTSAC 2 cut(s) 146, 668
TspDTI ATGAA 2 cut(s) 270, 782
TspGWI ACGGA 1 cut(s) 399
TspRI CASTG 4 cut(s) 149, 496, 696, 780
XapI RAATTY 1 cut(s) 480
XbaI TCTAGA 1 cut(s) 527
XmnI GAANNNNTTC 1 cut(s) 391
XspI CTAG 3 cut(s) 318, 528, 621
Zsp2I ATGCAT 1 cut(s) 963
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.