Rh2AG157000

BES1 BZR1 homolog protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0013883
Physical Location & Seq
Reverse (-)
14733223 .. 14734699
1477 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG157000.1

Sequence Viewer

Length: 972 bp
ATGACCGGCGGTGGGTCATCGGGGAGGTTACCGACGTGGAAGGAGAGGGAGAACAACAAGAGGAGGGAGCGGAGGAGGAGAGCCATTGCTGCTAAGATATACTCTGGCCTCAGAGCCCAGGGCAGCTACAAGCTTCCCAAGCACTGCGACAACAACGAGGTCTTGAAAGCTCTATGTGCTGAAGCTGGTTGGGTCGTTGAAGAAGATGGCACTACTTACCGCAAGGGATGCAAGCCACCAATTGAAATTGCAGGCACTCCCACAAATATGAGTGCGTGTTCATCTATGCAACCAAGCCCACAATCCTCATCTTTCCCAAGTCCTGTGCCGTCCTACCATGCCAGTCCATCATCCTCCTCCTTTCCCAGCCCAACTCGTTTCGATGGAAACCCCTCCTCTTACCATCAAAACCCCTCCTCTTACCTTCTTCCATTCCTGCATAACTTGGCTTCCATTCCCACGAATCTTCCTCCTCTTAGAATTTCCAACAGTGCTCCTGTCACTCCTCCTCTTTCTTCTCCAACCTCTAGAGGATCGAAGCGGAAACCTGACTGGGAATCCCTTACTAATGGCTGCATAAACTCCTTGCGCCACCCCCTTTTTGCAGCCTCTGCCCCTTCAAGTCCTACTCGGCGCCACCATCTTGCACCTGCCACAATTCCAGAATGTGACGAGTCTGATGCTTCCACAGTGGACTCCGGTCGGTGGGTGAGTTTCCAAACAGGGGTACCTTCAGTAGCTCCACCTTCACCCACATTTAATCTTATGAAACCGGTGGCTGAGCAGAATGTTCTTCAGCAGACTGTTGTTGGGCATGGGGGGATTGGTTGGGGGAACCCTGTGGAGAGGGCACGAGGCTCCGAGTTTGAGTTTGAGAGTGGCAGGCTGAAAGCTTGGGAGGGTGAGAGAATACACGAGGTTGGAGTGGAAGATCTGGAGCTTACACTTGGGAATGGGAAGATGCATAGTTAA

Protein Analysis

323

Amino Acids

34.97

Weight (kDa)

9.04

Isoelectric Point (pI)

75.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BES1_N PF05687 6 - 149 9.9e-66 BES1/BZR1 plant transcription factor, N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013883)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G36780
fragaria_vesca FvH4_1g14040
malus_domestica MD15G1267600.v1.1 MD15G1267800.v1.1
prunus_persica Prupe.7G149000_v2.0.a1
pyrus_communis pycom02g12160 pycom15g23310
rosa_chinensis RchiOBHm_Chr2g0102631
rosa_laevigata RLG00000017158
rosa_multiflora Rmu_sc0003852.1_g000007
rosa_roxburghii Rroxscaffold_2G00140430
rosa_rugosa Rorug02G0108300
rosa_samantha Rh2AG157000 Rh2BG163300 Rh2CG162400 Rh2DG162200
rosa_wichuraiana Rw2G012180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 658
Acc36I ACCTGC 1 cut(s) 658
Acc65I GGTACC 1 cut(s) 727
AccB1I GGYRCC 2 cut(s) 633, 727
AccBSI CCGCTC 1 cut(s) 70
AciI CCGC 4 cut(s) 9, 70, 220, 541
AclWI GGATC 1 cut(s) 541
AcsI RAATTY 1 cut(s) 480
AcuI CTGAAG 3 cut(s) 201, 717, 779
AcyI GRCGYC 1 cut(s) 634
AfaI GTAC 1 cut(s) 729
AfiI CCNNNNNNNGG 3 cut(s) 12, 705, 724
AgeI ACCGGT 1 cut(s) 772
AgsI TTSAA 4 cut(s) 166, 200, 245, 621
AjiI CACGTC 1 cut(s) 36
AjnI CCWGG 1 cut(s) 117
AluBI AGCT 7 cut(s) 126, 133, 170, 185, 740, 893, 940
AluI AGCT 7 cut(s) 126, 133, 170, 185, 740, 893, 940
Alw21I GWGCWC 1 cut(s) 496
AlwI GGATC 1 cut(s) 541
AlwNI CAGNNNCTG 1 cut(s) 611
AoxI GGCC 1 cut(s) 106
ApeKI GCWGC 4 cut(s) 89, 123, 573, 605
ApoI RAATTY 1 cut(s) 480
AsiGI ACCGGT 1 cut(s) 772
Asp718I GGTACC 1 cut(s) 727
AspLEI GCGC 2 cut(s) 591, 636
AsuHPI GGTGA 3 cut(s) 721, 741, 914
BaeGI GKGCMC 1 cut(s) 853
BaeI ACNNNNGTAYC 2 cut(s) 711, 744
BanI GGYRCC 2 cut(s) 633, 727
BanII GRGCYC 1 cut(s) 118
BauI CACGAG 2 cut(s) 852, 914
Bbv12I GWGCWC 1 cut(s) 496
BbvI GCAGC 4 cut(s) 76, 135, 560, 617
BccI CCATC 5 cut(s) 200, 355, 377, 411, 648
BceAI ACGGC 1 cut(s) 313
BcgI CGANNNNNNTGC 2 cut(s) 662, 696
BciT130I CCWGG 1 cut(s) 119
BfaI CTAG 1 cut(s) 528
BfoI RGCGCY 1 cut(s) 637
BfuAI ACCTGC 1 cut(s) 658
BglII AGATCT 1 cut(s) 931
BisI GCNGC 4 cut(s) 90, 124, 574, 606
BlpI GCTNAGC 1 cut(s) 780
BlsI GCNGC 4 cut(s) 91, 125, 575, 607
Bme1390I CCNGG 1 cut(s) 119
BmgBI CACGTC 1 cut(s) 36
BmiI GGNNCC 4 cut(s) 635, 729, 836, 859
BmrFI CCNGG 1 cut(s) 119
BmrI ACTGGG 1 cut(s) 562
BmsI GCATC 3 cut(s) 218, 670, 951
BmuI ACTGGG 1 cut(s) 562
BoxI GACNNNNGTC 1 cut(s) 699
BpmI CTGGAG 1 cut(s) 956
Bpu1102I GCTNAGC 1 cut(s) 780
BsaHI GRCGYC 1 cut(s) 634
BsaJI CCNNGG 2 cut(s) 117, 118
BsaWI WCCGGW 2 cut(s) 698, 772
Bsc4I CCNNNNNNNGG 3 cut(s) 12, 705, 724
Bse118I RCCGGY 2 cut(s) 5, 772
Bse1I ACTGG 2 cut(s) 342, 557
Bse3DI GCAATG 1 cut(s) 84
BseBI CCWGG 1 cut(s) 119
BseDI CCNNGG 2 cut(s) 117, 118
BseGI GGATG 2 cut(s) 233, 350
BseLI CCNNNNNNNGG 3 cut(s) 12, 705, 724
BseMI GCAATG 1 cut(s) 84
BseMII CTCAG 2 cut(s) 124, 771
BseNI ACTGG 2 cut(s) 342, 557
BseRI GAGGAG 9 cut(s) 76, 88, 91, 346, 385, 406, 462, 495, 498
BseSI GKGCMC 1 cut(s) 853
BseXI GCAGC 4 cut(s) 76, 135, 560, 617
BseYI CCCAGC 1 cut(s) 365
Bsh1285I CGRYCG 1 cut(s) 703
BshFI GGCC 1 cut(s) 108
BshNI GGYRCC 2 cut(s) 633, 727
BshTI ACCGGT 1 cut(s) 772
BsiEI CGRYCG 1 cut(s) 703
BsiHKAI GWGCWC 1 cut(s) 496
BsiSI CCGG 3 cut(s) 6, 699, 773
BslI CCNNNNNNNGG 3 cut(s) 12, 705, 724
BsnI GGCC 1 cut(s) 108
Bsp1286I GDGCHC 3 cut(s) 118, 496, 853
Bsp143I GATC 2 cut(s) 533, 931
Bsp1720I GCTNAGC 1 cut(s) 780
BspACI CCGC 4 cut(s) 9, 70, 220, 541
BspANI GGCC 1 cut(s) 108
BspCNI CTCAG 2 cut(s) 123, 772
BspLI GGNNCC 4 cut(s) 635, 729, 836, 859
BspMI ACCTGC 1 cut(s) 658
BspPI GGATC 1 cut(s) 541
BspT107I GGYRCC 2 cut(s) 633, 727
BsrBI CCGCTC 1 cut(s) 70
BsrDI GCAATG 1 cut(s) 84
BsrFI RCCGGY 2 cut(s) 5, 772
BsrI ACTGG 2 cut(s) 342, 557
BssAI RCCGGY 2 cut(s) 5, 772
BssECI CCNNGG 2 cut(s) 117, 118
BssMI GATC 2 cut(s) 533, 931
BssNI GRCGYC 1 cut(s) 634
BssSI CACGAG 2 cut(s) 852, 914
Bst2BI CACGAG 2 cut(s) 852, 914
Bst2UI CCWGG 1 cut(s) 119
Bst4CI ACNGT 3 cut(s) 491, 691, 805
BstACI GRCGYC 1 cut(s) 634
BstAPI GCANNNNNTGC 2 cut(s) 228, 611
BstC8I GCNNGC 3 cut(s) 233, 253, 884
BstDEI CTNAG 4 cut(s) 93, 110, 476, 780
BstEII GGTNACC 1 cut(s) 27
BstF5I GGATG 2 cut(s) 233, 350
BstH2I RGCGCY 1 cut(s) 637
BstHHI GCGC 2 cut(s) 591, 636
BstKTI GATC 2 cut(s) 536, 934
BstMBI GATC 2 cut(s) 533, 931
BstMCI CGRYCG 1 cut(s) 703
BstMWI GCNNNNNNNGC 5 cut(s) 89, 139, 176, 228, 611
BstNI CCWGG 1 cut(s) 119
BstPAI GACNNNNGTC 1 cut(s) 699
BstPI GGTNACC 1 cut(s) 27
BstSCI CCNGG 1 cut(s) 117
BstSLI GKGCMC 1 cut(s) 853
BstV1I GCAGC 4 cut(s) 76, 135, 560, 617
BstX2I RGATCY 1 cut(s) 931
BstYI RGATCY 1 cut(s) 931
BsuRI GGCC 1 cut(s) 108
BtrI CACGTC 1 cut(s) 36
BtsCI GGATG 2 cut(s) 233, 350
BtsI GCAGTG 1 cut(s) 142
BtsIMutI CAGTG 3 cut(s) 142, 496, 696
BveI ACCTGC 1 cut(s) 658
Cac8I GCNNGC 3 cut(s) 233, 253, 884
CaiI CAGNNNCTG 1 cut(s) 611
CfoI GCGC 2 cut(s) 591, 636
Cfr10I RCCGGY 2 cut(s) 5, 772
Csp6I GTAC 1 cut(s) 728
CspAI ACCGGT 1 cut(s) 772
CviAII CATG 2 cut(s) 338, 815
CviQI GTAC 1 cut(s) 728
DdeI CTNAG 4 cut(s) 93, 110, 476, 780
DinI GGCGCC 1 cut(s) 635
DpnI GATC 2 cut(s) 535, 933
DpnII GATC 2 cut(s) 533, 931
Eco24I GRGCYC 1 cut(s) 118
Eco57I CTGAAG 3 cut(s) 201, 717, 779
Eco91I GGTNACC 1 cut(s) 27
EcoO65I GGTNACC 1 cut(s) 27
EcoRII CCWGG 1 cut(s) 117
EcoT22I ATGCAT 1 cut(s) 966
EcoT38I GRGCYC 1 cut(s) 118
EgeI GGCGCC 1 cut(s) 635
EheI GGCGCC 1 cut(s) 635
FaeI CATG 2 cut(s) 341, 818
FatI CATG 2 cut(s) 337, 814
Fnu4HI GCNGC 4 cut(s) 90, 124, 574, 606
FokI GGATG 2 cut(s) 240, 337
FriOI GRGCYC 1 cut(s) 118
Fsp4HI GCNGC 4 cut(s) 90, 124, 574, 606
FspBI CTAG 1 cut(s) 528
GlaI GCGC 2 cut(s) 590, 635
GluI GCNGC 4 cut(s) 90, 124, 574, 606
GsaI CCCAGC 1 cut(s) 369
GsuI CTGGAG 1 cut(s) 956
HaeII RGCGCY 1 cut(s) 637
HaeIII GGCC 1 cut(s) 108
HapII CCGG 3 cut(s) 6, 699, 773
HhaI GCGC 2 cut(s) 591, 636
Hin1I GRCGYC 1 cut(s) 634
Hin1II CATG 2 cut(s) 341, 818
Hin6I GCGC 2 cut(s) 589, 634
HinP1I GCGC 2 cut(s) 589, 634
HindIII AAGCTT 2 cut(s) 131, 891
HinfI GANTC 4 cut(s) 463, 557, 674, 695
HpaII CCGG 3 cut(s) 6, 699, 773
HphI GGTGA 3 cut(s) 721, 741, 914
Hpy166II GTNNAC 1 cut(s) 694
Hpy188I TCNGA 3 cut(s) 113, 679, 862
Hpy188III TCNNGA 4 cut(s) 163, 528, 662, 935
Hpy8I GTNNAC 1 cut(s) 694
Hpy99I CGWCG 1 cut(s) 37
HpyAV CCTTC 5 cut(s) 34, 434, 627, 741, 756
HpyCH4III ACNGT 3 cut(s) 491, 691, 805
HpyCH4IV ACGT 1 cut(s) 35
HpyCH4V TGCA 8 cut(s) 231, 251, 289, 439, 576, 605, 647, 964
HpyF10VI GCNNNNNNNGC 5 cut(s) 89, 139, 176, 228, 611
HpyF3I CTNAG 4 cut(s) 93, 110, 476, 780
HpySE526I ACGT 1 cut(s) 35
Hsp92I GRCGYC 1 cut(s) 634
Hsp92II CATG 2 cut(s) 341, 818
HspAI GCGC 2 cut(s) 589, 634
KasI GGCGCC 1 cut(s) 633
KpnI GGTACC 1 cut(s) 731
Kzo9I GATC 2 cut(s) 533, 931
LmnI GCTCC 5 cut(s) 67, 499, 745, 863, 937
Lsp1109I GCAGC 4 cut(s) 76, 135, 560, 617
LweI GCATC 3 cut(s) 218, 670, 951
MaeI CTAG 1 cut(s) 528
MaeII ACGT 1 cut(s) 35
MaeIII GTNAC 3 cut(s) 27, 499, 668
MalI GATC 2 cut(s) 535, 933
MbiI CCGCTC 1 cut(s) 70
MboI GATC 2 cut(s) 533, 931
MboII GAAGA 8 cut(s) 212, 215, 419, 458, 507, 785, 941, 970
MfeI CAATTG 1 cut(s) 240
MflI RGATCY 1 cut(s) 931
MhlI GDGCHC 3 cut(s) 118, 496, 853
MluCI AATT 4 cut(s) 240, 246, 480, 657
Mly113I GGCGCC 1 cut(s) 634
MlyI GAGTC 2 cut(s) 683, 689
MmeI TCCRAC 3 cut(s) 510, 545, 901
Mph1103I ATGCAT 1 cut(s) 966
MseI TTAA 2 cut(s) 759, 970
MslI CAYNNNNRTG 1 cut(s) 266
MspI CCGG 3 cut(s) 6, 699, 773
MspR9I CCNGG 1 cut(s) 119
MunI CAATTG 1 cut(s) 240
MvaI CCWGG 1 cut(s) 119
MwoI GCNNNNNNNGC 5 cut(s) 89, 139, 176, 228, 611
NarI GGCGCC 1 cut(s) 634
NdeII GATC 2 cut(s) 533, 931
NlaIII CATG 2 cut(s) 341, 818
NlaIV GGNNCC 4 cut(s) 635, 729, 836, 859
NmeAIII GCCGAG 1 cut(s) 610
NmuCI GTSAC 2 cut(s) 499, 668
NsiI ATGCAT 1 cut(s) 966
PaqCI CACCTGC 1 cut(s) 658
PasI CCCWGGG 1 cut(s) 118
PfeI GAWTC 2 cut(s) 463, 557
PinAI ACCGGT 1 cut(s) 772
PkrI GCNGC 4 cut(s) 91, 125, 575, 607
PleI GAGTC 2 cut(s) 682, 689
PluTI GGCGCC 1 cut(s) 637
PpsI GAGTC 2 cut(s) 682, 689
PshAI GACNNNNGTC 1 cut(s) 699
Psp6I CCWGG 1 cut(s) 117
PspEI GGTNACC 1 cut(s) 27
PspFI CCCAGC 1 cut(s) 365
PspGI CCWGG 1 cut(s) 117
PspN4I GGNNCC 4 cut(s) 635, 729, 836, 859
PstNI CAGNNNCTG 1 cut(s) 611
PsuI RGATCY 1 cut(s) 931
RsaI GTAC 1 cut(s) 729
RsaNI GTAC 1 cut(s) 728
RseI CAYNNNNRTG 1 cut(s) 266
SaqAI TTAA 2 cut(s) 759, 970
SatI GCNGC 4 cut(s) 90, 124, 574, 606
Sau3AI GATC 2 cut(s) 533, 931
SchI GAGTC 2 cut(s) 683, 689
ScrFI CCNGG 1 cut(s) 119
SduI GDGCHC 3 cut(s) 118, 496, 853
SfaNI GCATC 3 cut(s) 218, 670, 951
SfoI GGCGCC 1 cut(s) 635
SmiMI CAYNNNNRTG 1 cut(s) 266
Sse9I AATT 4 cut(s) 240, 246, 480, 657
SsiI CCGC 4 cut(s) 9, 70, 220, 541
SspDI GGCGCC 1 cut(s) 633
SspMI CTAG 1 cut(s) 528
StyD4I CCNGG 1 cut(s) 117
TaaI ACNGT 3 cut(s) 491, 691, 805
TaiI ACGT 1 cut(s) 38
TaqI TCGA 2 cut(s) 381, 536
TasI AATT 4 cut(s) 240, 246, 480, 657
TfiI GAWTC 2 cut(s) 463, 557
Tru1I TTAA 2 cut(s) 759, 970
Tru9I TTAA 2 cut(s) 759, 970
TscAI CASTG 3 cut(s) 149, 496, 696
TseFI GTSAC 2 cut(s) 499, 668
TseI GCWGC 4 cut(s) 89, 123, 573, 605
Tsp45I GTSAC 2 cut(s) 499, 668
TspDTI ATGAA 2 cut(s) 270, 782
TspRI CASTG 3 cut(s) 149, 496, 696
XapI RAATTY 1 cut(s) 480
XbaI TCTAGA 1 cut(s) 527
XspI CTAG 1 cut(s) 528
Zsp2I ATGCAT 1 cut(s) 966
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.