Rroxscaffold_2G00140430

BES1 BZR1 homolog protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0013883
Physical Location & Seq
Forward (+)
78645263 .. 78648334
3072 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00140430.1

Sequence Viewer

Length: 822 bp
ATGACCGGCGGTGGGTCATCGGGGAGGTTACCTACGTGGAAGGAGAGGGAGAACAACAAGAGGAGGGAGCGGAGGAGGAGAGCCATTGCTGCTAAGATATACTCTGGCCTCAGAGCTCAGGGCAGCTACAAGCTTCCCAAGCACTGCGACAACAACGAGGTCTTGAAAGCTCTATGTGCTGAAGCTGGTTGGGTCGTTGAAGAAGATGGCACTACTTACCGCAAGGAACAGATTGAGCAACTTGATTTCTGTTCTGTAATAGAATATCTTTTTCTCTGTTCTGGTTCTGCTCATCTGCTAGCTCAGGATCTGAACTCTGTCACAAAGGCTCTATCTGGATGCAAGCCACCAATTGAAATTGCAGGCACTCCCACAAATATGAGTGCGTGTTCATCTATGCAACCAAGCCCACAATCCTCATCTTTCCCAAGTCCTGTGCCGTCCTACCATGCCAGTCCATCATCCTCCTCCTTTCCCAGCCCAACTCGTTTCGATGGAAACCCCTCCTCTTACCATCAAAACCCGTCCTCTTACCTTCTTCCATTCCTGCATAACTTGGCTTCCATTCCCACGAATCTTCCTCCTCTTAGAATTTCCAACAGTGCTCCTGTCACTCCTCCTCTTTCTTCTCCAACCTCTAGAGGATCAAAGCGGAAACCTGACTGGGAATCCCTTACTAATGGCTGCATAAACTCCTTGCGCCACCCCTTTTTGCAGCCTCTGCCCCTTCAAGTCCTACTCGGCGCCACCATCTTGCACCTGCCACAATTCCAGAATGTGACGAGTCTGATGCTTCCACAGTGGACTCCGGTCGGTGGGTGA

Protein Analysis

273

Amino Acids

29.78

Weight (kDa)

9.23

Isoelectric Point (pI)

73.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BES1_N PF05687 6 - 186 2.4e-58 BES1/BZR1 plant transcription factor, N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013883)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G36780
fragaria_vesca FvH4_1g14040
malus_domestica MD15G1267600.v1.1 MD15G1267800.v1.1
prunus_persica Prupe.7G149000_v2.0.a1
pyrus_communis pycom02g12160 pycom15g23310
rosa_chinensis RchiOBHm_Chr2g0102631
rosa_laevigata RLG00000017158
rosa_multiflora Rmu_sc0003852.1_g000007
rosa_roxburghii Rroxscaffold_2G00140430
rosa_rugosa Rorug02G0108300
rosa_samantha Rh2AG157000 Rh2BG163300 Rh2CG162400 Rh2DG162200
rosa_wichuraiana Rw2G012180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 768
Acc36I ACCTGC 1 cut(s) 768
AccB1I GGYRCC 1 cut(s) 743
AccBSI CCGCTC 1 cut(s) 70
AciI CCGC 4 cut(s) 9, 70, 220, 652
AclWI GGATC 2 cut(s) 315, 652
AcsI RAATTY 1 cut(s) 591
AcuI CTGAAG 1 cut(s) 201
AcyI GRCGYC 1 cut(s) 744
AfiI CCNNNNNNNGG 2 cut(s) 12, 815
AgsI TTSAA 4 cut(s) 166, 200, 356, 731
AluBI AGCT 6 cut(s) 116, 126, 133, 170, 185, 302
AluI AGCT 6 cut(s) 116, 126, 133, 170, 185, 302
Alw21I GWGCWC 2 cut(s) 118, 607
AlwI GGATC 2 cut(s) 315, 652
AlwNI CAGNNNCTG 2 cut(s) 310, 721
AoxI GGCC 1 cut(s) 106
ApeKI GCWGC 4 cut(s) 89, 123, 684, 715
ApoI RAATTY 1 cut(s) 591
AspLEI GCGC 2 cut(s) 702, 746
AsuNHI GCTAGC 1 cut(s) 298
BanI GGYRCC 1 cut(s) 743
BanII GRGCYC 1 cut(s) 118
Bbv12I GWGCWC 2 cut(s) 118, 607
BbvI GCAGC 4 cut(s) 76, 135, 671, 727
BccI CCATC 5 cut(s) 200, 466, 488, 522, 758
BceAI ACGGC 1 cut(s) 424
BcgI CGANNNNNNTGC 2 cut(s) 772, 806
BfaI CTAG 2 cut(s) 299, 639
BfoI RGCGCY 1 cut(s) 747
BfuAI ACCTGC 1 cut(s) 768
BisI GCNGC 4 cut(s) 90, 124, 685, 716
BlsI GCNGC 4 cut(s) 91, 125, 686, 717
BmiI GGNNCC 1 cut(s) 745
BmrI ACTGGG 1 cut(s) 673
BmsI GCATC 2 cut(s) 329, 780
BmtI GCTAGC 1 cut(s) 302
BmuI ACTGGG 1 cut(s) 673
BoxI GACNNNNGTC 1 cut(s) 809
Bpu10I CCTNAGC 2 cut(s) 117, 303
BsaAI YACGTR 1 cut(s) 36
BsaHI GRCGYC 1 cut(s) 744
BsaWI WCCGGW 1 cut(s) 808
Bsc4I CCNNNNNNNGG 2 cut(s) 12, 815
Bse118I RCCGGY 1 cut(s) 5
Bse1I ACTGG 2 cut(s) 453, 668
Bse3DI GCAATG 1 cut(s) 84
BseGI GGATG 2 cut(s) 344, 461
BseLI CCNNNNNNNGG 2 cut(s) 12, 815
BseMI GCAATG 1 cut(s) 84
BseMII CTCAG 3 cut(s) 124, 131, 317
BseNI ACTGG 2 cut(s) 453, 668
BseRI GAGGAG 8 cut(s) 76, 88, 91, 457, 496, 573, 606, 609
BseXI GCAGC 4 cut(s) 76, 135, 671, 727
BseYI CCCAGC 1 cut(s) 476
Bsh1285I CGRYCG 1 cut(s) 813
BshFI GGCC 1 cut(s) 108
BshNI GGYRCC 1 cut(s) 743
BsiEI CGRYCG 1 cut(s) 813
BsiHKAI GWGCWC 2 cut(s) 118, 607
BsiSI CCGG 2 cut(s) 6, 809
BslI CCNNNNNNNGG 2 cut(s) 12, 815
BsnI GGCC 1 cut(s) 108
Bsp1286I GDGCHC 2 cut(s) 118, 607
Bsp143I GATC 2 cut(s) 307, 644
BspACI CCGC 4 cut(s) 9, 70, 220, 652
BspANI GGCC 1 cut(s) 108
BspCNI CTCAG 3 cut(s) 123, 130, 316
BspLI GGNNCC 1 cut(s) 745
BspMI ACCTGC 1 cut(s) 768
BspOI GCTAGC 1 cut(s) 302
BspPI GGATC 2 cut(s) 315, 652
BspT107I GGYRCC 1 cut(s) 743
BsrBI CCGCTC 1 cut(s) 70
BsrDI GCAATG 1 cut(s) 84
BsrFI RCCGGY 1 cut(s) 5
BsrI ACTGG 2 cut(s) 453, 668
BssAI RCCGGY 1 cut(s) 5
BssMI GATC 2 cut(s) 307, 644
BssNI GRCGYC 1 cut(s) 744
Bst4CI ACNGT 2 cut(s) 602, 801
BstACI GRCGYC 1 cut(s) 744
BstAPI GCANNNNNTGC 1 cut(s) 721
BstBAI YACGTR 1 cut(s) 36
BstC8I GCNNGC 3 cut(s) 300, 344, 364
BstDEI CTNAG 5 cut(s) 93, 110, 117, 303, 587
BstEII GGTNACC 1 cut(s) 27
BstF5I GGATG 2 cut(s) 344, 461
BstH2I RGCGCY 1 cut(s) 747
BstHHI GCGC 2 cut(s) 702, 746
BstKTI GATC 2 cut(s) 310, 647
BstMBI GATC 2 cut(s) 307, 644
BstMCI CGRYCG 1 cut(s) 813
BstMWI GCNNNNNNNGC 4 cut(s) 89, 139, 176, 721
BstPAI GACNNNNGTC 1 cut(s) 809
BstPI GGTNACC 1 cut(s) 27
BstV1I GCAGC 4 cut(s) 76, 135, 671, 727
BstX2I RGATCY 1 cut(s) 307
BstYI RGATCY 1 cut(s) 307
BsuRI GGCC 1 cut(s) 108
BtsCI GGATG 2 cut(s) 344, 461
BtsI GCAGTG 1 cut(s) 142
BtsIMutI CAGTG 3 cut(s) 142, 607, 806
BveI ACCTGC 1 cut(s) 768
Cac8I GCNNGC 3 cut(s) 300, 344, 364
CaiI CAGNNNCTG 2 cut(s) 310, 721
CfoI GCGC 2 cut(s) 702, 746
Cfr10I RCCGGY 1 cut(s) 5
CviAII CATG 1 cut(s) 449
DdeI CTNAG 5 cut(s) 93, 110, 117, 303, 587
DinI GGCGCC 1 cut(s) 745
DpnI GATC 2 cut(s) 309, 646
DpnII GATC 2 cut(s) 307, 644
Ecl136II GAGCTC 1 cut(s) 116
Eco24I GRGCYC 1 cut(s) 118
Eco53kI GAGCTC 1 cut(s) 116
Eco57I CTGAAG 1 cut(s) 201
Eco91I GGTNACC 1 cut(s) 27
EcoICRI GAGCTC 1 cut(s) 116
EcoO65I GGTNACC 1 cut(s) 27
EcoT38I GRGCYC 1 cut(s) 118
EgeI GGCGCC 1 cut(s) 745
EheI GGCGCC 1 cut(s) 745
FaeI CATG 1 cut(s) 452
FaiI YATR 7 cut(s) 100, 175, 380, 398, 450, 552, 689
FatI CATG 1 cut(s) 448
Fnu4HI GCNGC 4 cut(s) 90, 124, 685, 716
FokI GGATG 2 cut(s) 351, 448
FriOI GRGCYC 1 cut(s) 118
Fsp4HI GCNGC 4 cut(s) 90, 124, 685, 716
FspBI CTAG 2 cut(s) 299, 639
GlaI GCGC 2 cut(s) 701, 745
GluI GCNGC 4 cut(s) 90, 124, 685, 716
GsaI CCCAGC 1 cut(s) 480
HaeII RGCGCY 1 cut(s) 747
HaeIII GGCC 1 cut(s) 108
HapII CCGG 2 cut(s) 6, 809
HhaI GCGC 2 cut(s) 702, 746
Hin1I GRCGYC 1 cut(s) 744
Hin1II CATG 1 cut(s) 452
Hin6I GCGC 2 cut(s) 700, 744
HinP1I GCGC 2 cut(s) 700, 744
HindIII AAGCTT 1 cut(s) 131
HinfI GANTC 4 cut(s) 574, 668, 784, 805
HpaII CCGG 2 cut(s) 6, 809
Hpy166II GTNNAC 1 cut(s) 804
Hpy188I TCNGA 3 cut(s) 113, 312, 789
Hpy188III TCNNGA 5 cut(s) 163, 305, 336, 639, 772
Hpy8I GTNNAC 1 cut(s) 804
HpyAV CCTTC 3 cut(s) 34, 545, 737
HpyCH4III ACNGT 2 cut(s) 602, 801
HpyCH4IV ACGT 1 cut(s) 35
HpyCH4V TGCA 7 cut(s) 342, 362, 400, 550, 687, 715, 757
HpyF10VI GCNNNNNNNGC 4 cut(s) 89, 139, 176, 721
HpyF3I CTNAG 5 cut(s) 93, 110, 117, 303, 587
HpySE526I ACGT 1 cut(s) 35
Hsp92I GRCGYC 1 cut(s) 744
Hsp92II CATG 1 cut(s) 452
HspAI GCGC 2 cut(s) 700, 744
KasI GGCGCC 1 cut(s) 743
Kzo9I GATC 2 cut(s) 307, 644
LmnI GCTCC 2 cut(s) 67, 610
Lsp1109I GCAGC 4 cut(s) 76, 135, 671, 727
LweI GCATC 2 cut(s) 329, 780
MaeI CTAG 2 cut(s) 299, 639
MaeII ACGT 1 cut(s) 35
MaeIII GTNAC 4 cut(s) 27, 319, 610, 778
MalI GATC 2 cut(s) 309, 646
MbiI CCGCTC 1 cut(s) 70
MboI GATC 2 cut(s) 307, 644
MboII GAAGA 5 cut(s) 212, 215, 530, 569, 618
MfeI CAATTG 1 cut(s) 351
MflI RGATCY 1 cut(s) 307
MhlI GDGCHC 2 cut(s) 118, 607
MluCI AATT 4 cut(s) 351, 357, 591, 767
Mly113I GGCGCC 1 cut(s) 744
MlyI GAGTC 2 cut(s) 793, 799
MmeI TCCRAC 2 cut(s) 621, 656
MslI CAYNNNNRTG 1 cut(s) 377
MspI CCGG 2 cut(s) 6, 809
MunI CAATTG 1 cut(s) 351
MwoI GCNNNNNNNGC 4 cut(s) 89, 139, 176, 721
NarI GGCGCC 1 cut(s) 744
NdeII GATC 2 cut(s) 307, 644
NheI GCTAGC 1 cut(s) 298
NlaIII CATG 1 cut(s) 452
NlaIV GGNNCC 1 cut(s) 745
NmeAIII GCCGAG 1 cut(s) 720
NmuCI GTSAC 3 cut(s) 319, 610, 778
PaqCI CACCTGC 1 cut(s) 768
PfeI GAWTC 2 cut(s) 574, 668
PkrI GCNGC 4 cut(s) 91, 125, 686, 717
PleI GAGTC 2 cut(s) 792, 799
PluTI GGCGCC 1 cut(s) 747
PpsI GAGTC 2 cut(s) 792, 799
Ppu21I YACGTR 1 cut(s) 36
PshAI GACNNNNGTC 1 cut(s) 809
Psp124BI GAGCTC 1 cut(s) 118
PspEI GGTNACC 1 cut(s) 27
PspFI CCCAGC 1 cut(s) 476
PspN4I GGNNCC 1 cut(s) 745
PstNI CAGNNNCTG 2 cut(s) 310, 721
PsuI RGATCY 1 cut(s) 307
RseI CAYNNNNRTG 1 cut(s) 377
SacI GAGCTC 1 cut(s) 118
SatI GCNGC 4 cut(s) 90, 124, 685, 716
Sau3AI GATC 2 cut(s) 307, 644
SchI GAGTC 2 cut(s) 793, 799
SduI GDGCHC 2 cut(s) 118, 607
SfaNI GCATC 2 cut(s) 329, 780
SfoI GGCGCC 1 cut(s) 745
SmiMI CAYNNNNRTG 1 cut(s) 377
Sse9I AATT 4 cut(s) 351, 357, 591, 767
SsiI CCGC 4 cut(s) 9, 70, 220, 652
SspDI GGCGCC 1 cut(s) 743
SspMI CTAG 2 cut(s) 299, 639
SstI GAGCTC 1 cut(s) 118
TaaI ACNGT 2 cut(s) 602, 801
TaiI ACGT 1 cut(s) 38
TaqI TCGA 1 cut(s) 492
TasI AATT 4 cut(s) 351, 357, 591, 767
TfiI GAWTC 2 cut(s) 574, 668
TscAI CASTG 3 cut(s) 149, 607, 806
TseFI GTSAC 3 cut(s) 319, 610, 778
TseI GCWGC 4 cut(s) 89, 123, 684, 715
Tsp45I GTSAC 3 cut(s) 319, 610, 778
TspDTI ATGAA 1 cut(s) 381
TspRI CASTG 3 cut(s) 149, 607, 806
XapI RAATTY 1 cut(s) 591
XbaI TCTAGA 1 cut(s) 638
XspI CTAG 2 cut(s) 299, 639
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.