Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0013883

Physical Location & Seq

Genomic Coordinates Reverse (-)

23109139 .. 23110545

Gene Structure 1407 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1267800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGACAGGCGGTGGTTCATCGGGGAGGTTACCAACATGGAAAGAGAGAGAGAACAATAAGAGGAGAGAGAGGAGGAGAAGAGCCATTGCTGCTAAGATGTATTCTGGTCTCAGAGCTCAGGGAAGCTACAAGCTTCCCAAGCACTGCGATAACAACGAGGTCTTGAAAGCTCTCTGTGCTGAAGCTGGCTGGGTTGTGGAAGAGGATGGCACCACCTACCGCAAGGGATGCAAGCCATCTCCAATGGAAATTGCAGGCCCCCCAACAAATATGAGTGCATGTTCCTCTATTCAACAAAGTCCACAATCCTCAGCTTTCCCAAGTCTTGTGCCATCTTACCATGCCAGTCCATCCTCCTCCTCTTTCCCAAGTCCTACTCGTTTTGATGGAAACCCCTCTTACCTTCTTCCGTTCCTGCGTAACATAGCTTCCATTCCCACAAATCTTCCTCCTCTTAGAATATCCAATAGTGCTCCTGTAACTCCACCTCTTTCTTCTCCAACCTCAAGAGGTTCAAAGCGAAAACCTGATTGGGACTCCCTTACTAATGGCTGCATAAGTTCATTTAGTGTGTTTGGTTTTATTTGGTGTGTTTATTTAATTTTAGTTGGTGTGTTTTTTTTTTACTTCATTTTTTATTATTTGGTATGTTTATGTAATTTTATTTGGTGTGTGTTTGTCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009741 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

BES1_N

Protein Analysis

229

Amino Acids

25.3

Weight (kDa)

9.46

Isoelectric Point (pI)

75.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BES1_N	PF05687	6 - 130	9.7e-64	BES1/BZR1 plant transcription factor, N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0013883)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36780
fragaria_vesca	FvH4_1g14040
malus_domestica	MD15G1267600.v1.1 MD15G1267800.v1.1
prunus_persica	Prupe.7G149000_v2.0.a1
pyrus_communis	pycom02g12160 pycom15g23310
rosa_chinensis	RchiOBHm_Chr2g0102631
rosa_laevigata	RLG00000017158
rosa_multiflora	Rmu_sc0003852.1_g000007
rosa_roxburghii	Rroxscaffold_2G00140430
rosa_rugosa	Rorug02G0108300
rosa_samantha	Rh2AG157000 Rh2BG163300 Rh2CG162400 Rh2DG162200
rosa_wichuraiana	Rw2G012180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	209
AciI	CCGC	2 cut(s)	9, 220
AcuI	CTGAAG	1 cut(s)	201
AgsI	TTSAA	3 cut(s)	166, 293, 516
AjuI	GAANNNNNNNTTGG	2 cut(s)	514, 546
AluBI	AGCT	7 cut(s)	116, 126, 133, 170, 185, 314, 428
AluI	AGCT	7 cut(s)	116, 126, 133, 170, 185, 314, 428
Alw21I	GWGCWC	2 cut(s)	118, 475
Alw26I	GTCTC	1 cut(s)	113
AoxI	GGCC	1 cut(s)	256
ApeKI	GCWGC	2 cut(s)	89, 552
AspS9I	GGNCC	1 cut(s)	257
BanI	GGYRCC	1 cut(s)	209
BanII	GRGCYC	1 cut(s)	118
BarI	GAAGNNNNNNTAC	2 cut(s)	412, 444
Bbv12I	GWGCWC	2 cut(s)	118, 475
BbvCI	CCTCAGC	1 cut(s)	310
BbvI	GCAGC	2 cut(s)	76, 539
BccI	CCATC	5 cut(s)	200, 244, 340, 358, 380
BcoDI	GTCTC	1 cut(s)	113
BisI	GCNGC	2 cut(s)	90, 553
BlsI	GCNGC	2 cut(s)	91, 554
BmgT120I	GGNCC	1 cut(s)	257
BmiI	GGNNCC	2 cut(s)	211, 259
BmsI	GCATC	1 cut(s)	218
Bpu10I	CCTNAGC	2 cut(s)	117, 310
BpuEI	CTTGAG	1 cut(s)	490
BsaI	GGTCTC	1 cut(s)	113
Bse1I	ACTGG	1 cut(s)	345
Bse3DI	GCAATG	1 cut(s)	84
BseGI	GGATG	3 cut(s)	211, 233, 350
BseMI	GCAATG	1 cut(s)	84
BseMII	CTCAG	3 cut(s)	124, 131, 324
BseNI	ACTGG	1 cut(s)	345
BseRI	GAGGAG	6 cut(s)	76, 85, 88, 346, 349, 441
BseXI	GCAGC	2 cut(s)	76, 539
BseYI	CCCAGC	1 cut(s)	189
BshFI	GGCC	1 cut(s)	258
BshNI	GGYRCC	1 cut(s)	209
BsiHKAI	GWGCWC	2 cut(s)	118, 475
BslFI	GGGAC	1 cut(s)	548
BsmAI	GTCTC	1 cut(s)	113
BsmFI	GGGAC	1 cut(s)	548
BsnI	GGCC	1 cut(s)	258
Bso31I	GGTCTC	1 cut(s)	113
Bsp1286I	GDGCHC	2 cut(s)	118, 475
BspACI	CCGC	2 cut(s)	9, 220
BspANI	GGCC	1 cut(s)	258
BspCNI	CTCAG	3 cut(s)	123, 130, 323
BspLI	GGNNCC	2 cut(s)	211, 259
BspQI	GCTCTTC	1 cut(s)	73
BspT107I	GGYRCC	1 cut(s)	209
BspTNI	GGTCTC	1 cut(s)	113
BsrDI	GCAATG	1 cut(s)	84
BsrI	ACTGG	1 cut(s)	345
Bst6I	CTCTTC	2 cut(s)	73, 195
BstAPI	GCANNNNNTGC	1 cut(s)	228
BstC8I	GCNNGC	3 cut(s)	187, 233, 256
BstDEI	CTNAG	5 cut(s)	93, 110, 117, 310, 455
BstEII	GGTNACC	1 cut(s)	27
BstF5I	GGATG	3 cut(s)	211, 233, 350
BstMAI	GTCTC	1 cut(s)	113
BstMWI	GCNNNNNNNGC	4 cut(s)	89, 139, 176, 228
BstNSI	RCATGY	1 cut(s)	282
BstPI	GGTNACC	1 cut(s)	27
BstV1I	GCAGC	2 cut(s)	76, 539
BsuRI	GGCC	1 cut(s)	258
BtsCI	GGATG	3 cut(s)	211, 233, 350
BtsI	GCAGTG	1 cut(s)	142
BtsIMutI	CAGTG	1 cut(s)	142
Cac8I	GCNNGC	3 cut(s)	187, 233, 256
Cfr13I	GGNCC	1 cut(s)	257
CviAII	CATG	3 cut(s)	36, 279, 341
DdeI	CTNAG	5 cut(s)	93, 110, 117, 310, 455
Eam1104I	CTCTTC	2 cut(s)	73, 195
EarI	CTCTTC	2 cut(s)	73, 195
Ecl136II	GAGCTC	1 cut(s)	116
Eco24I	GRGCYC	1 cut(s)	118
Eco31I	GGTCTC	1 cut(s)	113
Eco53kI	GAGCTC	1 cut(s)	116
Eco57I	CTGAAG	1 cut(s)	201
Eco91I	GGTNACC	1 cut(s)	27
EcoICRI	GAGCTC	1 cut(s)	116
EcoO109I	RGGNCCY	1 cut(s)	257
EcoO65I	GGTNACC	1 cut(s)	27
EcoT38I	GRGCYC	1 cut(s)	118
FaeI	CATG	3 cut(s)	39, 282, 344
FaiI	YATR	8 cut(s)	37, 272, 280, 342, 425, 557, 649, 655
FaqI	GGGAC	1 cut(s)	548
FatI	CATG	3 cut(s)	35, 278, 340
Fnu4HI	GCNGC	2 cut(s)	90, 553
FokI	GGATG	3 cut(s)	218, 240, 337
FriOI	GRGCYC	1 cut(s)	118
Fsp4HI	GCNGC	2 cut(s)	90, 553
GluI	GCNGC	2 cut(s)	90, 553
GsaI	CCCAGC	1 cut(s)	193
HaeIII	GGCC	1 cut(s)	258
Hin1II	CATG	3 cut(s)	39, 282, 344
HindIII	AAGCTT	1 cut(s)	131
HinfI	GANTC	1 cut(s)	536
Hpy166II	GTNNAC	1 cut(s)	302
Hpy188I	TCNGA	1 cut(s)	113
Hpy188III	TCNNGA	2 cut(s)	163, 507
Hpy8I	GTNNAC	1 cut(s)	302
HpyAV	CCTTC	1 cut(s)	413
HpyCH4V	TGCA	4 cut(s)	231, 254, 278, 555
HpyF10VI	GCNNNNNNNGC	4 cut(s)	89, 139, 176, 228
HpyF3I	CTNAG	5 cut(s)	93, 110, 117, 310, 455
Hsp92II	CATG	3 cut(s)	39, 282, 344
LguI	GCTCTTC	1 cut(s)	73
LmnI	GCTCC	1 cut(s)	478
LpnPI	CCDG	9 cut(s)	90, 104, 171, 175, 240, 358, 428, 489, 540
Lsp1109I	GCAGC	2 cut(s)	76, 539
LweI	GCATC	1 cut(s)	218
MaeIII	GTNAC	3 cut(s)	27, 419, 478
MboII	GAAGA	5 cut(s)	90, 212, 398, 437, 486
MhlI	GDGCHC	2 cut(s)	118, 475
MluCI	AATT	3 cut(s)	249, 600, 658
MlyI	GAGTC	1 cut(s)	530
MmeI	TCCRAC	1 cut(s)	524
MseI	TTAA	1 cut(s)	599
MwoI	GCNNNNNNNGC	4 cut(s)	89, 139, 176, 228
NlaIII	CATG	3 cut(s)	39, 282, 344
NlaIV	GGNNCC	2 cut(s)	211, 259
NspI	RCATGY	1 cut(s)	282
PciSI	GCTCTTC	1 cut(s)	73
PkrI	GCNGC	2 cut(s)	91, 554
PleI	GAGTC	1 cut(s)	530
PpsI	GAGTC	1 cut(s)	530
Psp124BI	GAGCTC	1 cut(s)	118
PspEI	GGTNACC	1 cut(s)	27
PspFI	CCCAGC	1 cut(s)	189
PspN4I	GGNNCC	2 cut(s)	211, 259
PspPI	GGNCC	1 cut(s)	257
SacI	GAGCTC	1 cut(s)	118
SapI	GCTCTTC	1 cut(s)	73
SaqAI	TTAA	1 cut(s)	599
SatI	GCNGC	2 cut(s)	90, 553
Sau96I	GGNCC	1 cut(s)	257
SchI	GAGTC	1 cut(s)	530
SduI	GDGCHC	2 cut(s)	118, 475
SfaNI	GCATC	1 cut(s)	218
SmlI	CTYRAG	1 cut(s)	505
SmoI	CTYRAG	1 cut(s)	505
Sse9I	AATT	3 cut(s)	249, 600, 658
SsiI	CCGC	2 cut(s)	9, 220
SstI	GAGCTC	1 cut(s)	118
TasI	AATT	3 cut(s)	249, 600, 658
Tru1I	TTAA	1 cut(s)	599
Tru9I	TTAA	1 cut(s)	599
TscAI	CASTG	1 cut(s)	149
TseI	GCWGC	2 cut(s)	89, 552
TspDTI	ATGAA	3 cut(s)	6, 552, 619
TspGWI	ACGGA	1 cut(s)	399
TspRI	CASTG	1 cut(s)	149
XceI	RCATGY	1 cut(s)	282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.