Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0013883

Physical Location & Seq

Genomic Coordinates Reverse (-)

23019683 .. 23022060

Gene Structure 2378 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1267600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGACAGGCGGTGGTTCATCGGGGAGGTTACCAACATGGAAAGAGAGAGAGAACAATAAGAGGAGAGAGAGGAGGAGAAGAGCCATTGCTGCTAAGATGTATTCTGGTCTCAGAGCTCAGGGAAGCTACAAGCTTCCCAAGCACTGCGATAACAACGAGGTCTTGAAAGCTCTCTGTGCTGAAGCTGGCTGGGTTGTGGAAGAGGATGGCACCACCTACCGCAAGGGATGCAAGCCATCTCCAATGGAAATTGCAGGCGCCCCAACAAATATGAGTGCATGTTCCTCTATTCAACAAAGTCCACAATCCTCAGCTTTCCCAAGTCCTGTGCCATCTTACCATGCCAGTCCATCCTCCTCCTCTTTCCCAAGTCCTACTCGTTTTGATGGAAACCCCTCTTACCTTCTTCCGTTCCTGCGTAACATAGCTTCCATTCCCACAAATCTTCCTCCTCTTAGAATATCCAATAGTGCTCCTGTAACTCCACCTCTTTCTTCTCCAACCTCAAGAGGTTCAAAGCGAAAACCTGATTGGGACTCCCTTACTAATGGCTGCATAAACTCCCTGCGCCACCCTCTTTTCGCGGCCTCTGCCCCTTCAAGTCCTACACGTCGACACCATCTTACACCTGCCACAATACCAGAATGTGATGAGTCTGATGCTTCCACTGTGGACTCTGGTCGTTGGGTCAGCTTTCAGACAGGGGCACCCTTAGTTGCTCCGCCTTCACCCACATTTAATCTTATGAAACCAGTGGCTGAGCAGAATGTTCTTCAGGATGCTGTTGAAGCCCATGTGGGGATGGGATGGGCAAGCACTGCAGAGAGGGGACGAGGCTCGGATTTTGAGTTTGAGAGTGGCACAGTGAAAGCTTGGGAGGGTGAGAGAATACATGAGGTAGGAGCGGATGATCTGGAGCTCACACTTGGCAATGGGAAGAACCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009741 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

BES1_N

Protein Analysis

316

Amino Acids

33.98

Weight (kDa)

8.73

Isoelectric Point (pI)

72.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BES1_N	PF05687	6 - 130	4.2e-65	BES1/BZR1 plant transcription factor, N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013883)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36780
fragaria_vesca	FvH4_1g14040
malus_domestica	MD15G1267600.v1.1 MD15G1267800.v1.1
prunus_persica	Prupe.7G149000_v2.0.a1
pyrus_communis	pycom02g12160 pycom15g23310
rosa_chinensis	RchiOBHm_Chr2g0102631
rosa_laevigata	RLG00000017158
rosa_multiflora	Rmu_sc0003852.1_g000007
rosa_roxburghii	Rroxscaffold_2G00140430
rosa_rugosa	Rorug02G0108300
rosa_samantha	Rh2AG157000 Rh2BG163300 Rh2CG162400 Rh2DG162200
rosa_wichuraiana	Rw2G012180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	637
Acc36I	ACCTGC	1 cut(s)	637
AccB1I	GGYRCC	3 cut(s)	209, 257, 706
AccBSI	CCGCTC	1 cut(s)	905
AccI	GTMKAC	1 cut(s)	613
AccII	CGCG	1 cut(s)	584
AciI	CCGC	5 cut(s)	9, 220, 584, 722, 905
AcuI	CTGAAG	2 cut(s)	201, 758
AcyI	GRCGYC	1 cut(s)	258
AfiI	CCNNNNNNNGG	1 cut(s)	798
AflIII	ACRYGT	1 cut(s)	608
AgsI	TTSAA	5 cut(s)	166, 293, 516, 600, 788
AjiI	CACGTC	1 cut(s)	611
AjuI	GAANNNNNNNTTGG	2 cut(s)	514, 546
Alw21I	GWGCWC	3 cut(s)	118, 475, 921
Alw26I	GTCTC	1 cut(s)	113
AlwNI	CAGNNNCTG	1 cut(s)	758
AoxI	GGCC	1 cut(s)	585
ApeKI	GCWGC	2 cut(s)	89, 552
AspLEI	GCGC	2 cut(s)	260, 570
AsuHPI	GGTGA	2 cut(s)	720, 893
BaeGI	GKGCMC	1 cut(s)	709
BanI	GGYRCC	3 cut(s)	209, 257, 706
BanII	GRGCYC	2 cut(s)	118, 921
BarI	GAAGNNNNNNTAC	2 cut(s)	412, 444
Bbv12I	GWGCWC	3 cut(s)	118, 475, 921
BbvCI	CCTCAGC	1 cut(s)	310
BbvI	GCAGC	2 cut(s)	76, 539
BccI	CCATC	8 cut(s)	200, 244, 340, 358, 380, 627, 796, 801
BcoDI	GTCTC	1 cut(s)	113
BfmI	CTRYAG	1 cut(s)	819
BfoI	RGCGCY	1 cut(s)	261
BfuAI	ACCTGC	1 cut(s)	637
BisI	GCNGC	3 cut(s)	90, 553, 585
BlpI	GCTNAGC	1 cut(s)	759
BlsI	GCNGC	3 cut(s)	91, 554, 586
BmgBI	CACGTC	1 cut(s)	611
BmiI	GGNNCC	3 cut(s)	211, 259, 708
BmsI	GCATC	3 cut(s)	218, 649, 769
BoxI	GACNNNNGTC	1 cut(s)	678
BpmI	CTGGAG	1 cut(s)	935
Bpu10I	CCTNAGC	2 cut(s)	117, 310
Bpu1102I	GCTNAGC	1 cut(s)	759
BpuEI	CTTGAG	1 cut(s)	490
BsaHI	GRCGYC	1 cut(s)	258
BsaI	GGTCTC	1 cut(s)	113
Bsc4I	CCNNNNNNNGG	1 cut(s)	798
Bse1I	ACTGG	2 cut(s)	345, 752
Bse3DI	GCAATG	2 cut(s)	84, 937
BseGI	GGATG	7 cut(s)	211, 233, 350, 784, 807, 812, 913
BseLI	CCNNNNNNNGG	1 cut(s)	798
BseMI	GCAATG	2 cut(s)	84, 937
BseMII	CTCAG	4 cut(s)	124, 131, 324, 750
BseNI	ACTGG	2 cut(s)	345, 752
BseRI	GAGGAG	6 cut(s)	76, 85, 88, 346, 349, 441
BseSI	GKGCMC	1 cut(s)	709
BseXI	GCAGC	2 cut(s)	76, 539
BseYI	CCCAGC	1 cut(s)	189
Bsh1236I	CGCG	1 cut(s)	584
BshFI	GGCC	1 cut(s)	587
BshNI	GGYRCC	3 cut(s)	209, 257, 706
BsiHKAI	GWGCWC	3 cut(s)	118, 475, 921
BslFI	GGGAC	2 cut(s)	548, 843
BslI	CCNNNNNNNGG	1 cut(s)	798
BsmAI	GTCTC	1 cut(s)	113
BsmFI	GGGAC	2 cut(s)	548, 843
BsnI	GGCC	1 cut(s)	587
Bso31I	GGTCTC	1 cut(s)	113
Bsp1286I	GDGCHC	4 cut(s)	118, 475, 709, 921
Bsp143I	GATC	1 cut(s)	910
Bsp1720I	GCTNAGC	1 cut(s)	759
BspACI	CCGC	5 cut(s)	9, 220, 584, 722, 905
BspANI	GGCC	1 cut(s)	587
BspCNI	CTCAG	4 cut(s)	123, 130, 323, 751
BspFNI	CGCG	1 cut(s)	584
BspLI	GGNNCC	3 cut(s)	211, 259, 708
BspMAI	CTGCAG	1 cut(s)	823
BspMI	ACCTGC	1 cut(s)	637
BspQI	GCTCTTC	1 cut(s)	73
BspT107I	GGYRCC	3 cut(s)	209, 257, 706
BspTNI	GGTCTC	1 cut(s)	113
BsrBI	CCGCTC	1 cut(s)	905
BsrDI	GCAATG	2 cut(s)	84, 937
BsrI	ACTGG	2 cut(s)	345, 752
BssMI	GATC	1 cut(s)	910
BssNI	GRCGYC	1 cut(s)	258
Bst4CI	ACNGT	2 cut(s)	670, 865
Bst6I	CTCTTC	2 cut(s)	73, 195
BstACI	GRCGYC	1 cut(s)	258
BstAPI	GCANNNNNTGC	2 cut(s)	228, 818
BstC8I	GCNNGC	4 cut(s)	187, 233, 256, 814
BstDEI	CTNAG	7 cut(s)	93, 110, 117, 310, 455, 712, 759
BstEII	GGTNACC	1 cut(s)	27
BstF5I	GGATG	7 cut(s)	211, 233, 350, 784, 807, 812, 913
BstFNI	CGCG	1 cut(s)	584
BstH2I	RGCGCY	1 cut(s)	261
BstHHI	GCGC	2 cut(s)	260, 570
BstKTI	GATC	1 cut(s)	913
BstMAI	GTCTC	1 cut(s)	113
BstMBI	GATC	1 cut(s)	910
BstMWI	GCNNNNNNNGC	7 cut(s)	89, 139, 176, 228, 590, 788, 818
BstNSI	RCATGY	1 cut(s)	282
BstPAI	GACNNNNGTC	1 cut(s)	678
BstPI	GGTNACC	1 cut(s)	27
BstSFI	CTRYAG	1 cut(s)	819
BstSLI	GKGCMC	1 cut(s)	709
BstUI	CGCG	1 cut(s)	584
BstV1I	GCAGC	2 cut(s)	76, 539
BsuRI	GGCC	1 cut(s)	587
BtrI	CACGTC	1 cut(s)	611
BtsCI	GGATG	7 cut(s)	211, 233, 350, 784, 807, 812, 913
BtsI	GCAGTG	2 cut(s)	142, 816
BtsIMutI	CAGTG	5 cut(s)	142, 666, 759, 816, 870
BveI	ACCTGC	1 cut(s)	637
Cac8I	GCNNGC	4 cut(s)	187, 233, 256, 814
CaiI	CAGNNNCTG	1 cut(s)	758
CfoI	GCGC	2 cut(s)	260, 570
CviAII	CATG	5 cut(s)	36, 279, 341, 794, 893
DdeI	CTNAG	7 cut(s)	93, 110, 117, 310, 455, 712, 759
DinI	GGCGCC	1 cut(s)	259
DpnI	GATC	1 cut(s)	912
DpnII	GATC	1 cut(s)	910
Eam1104I	CTCTTC	2 cut(s)	73, 195
EarI	CTCTTC	2 cut(s)	73, 195
EciI	GGCGGA	1 cut(s)	711
Ecl136II	GAGCTC	2 cut(s)	116, 919
Eco24I	GRGCYC	2 cut(s)	118, 921
Eco31I	GGTCTC	1 cut(s)	113
Eco53kI	GAGCTC	2 cut(s)	116, 919
Eco57I	CTGAAG	2 cut(s)	201, 758
Eco91I	GGTNACC	1 cut(s)	27
EcoICRI	GAGCTC	2 cut(s)	116, 919
EcoO65I	GGTNACC	1 cut(s)	27
EcoT38I	GRGCYC	2 cut(s)	118, 921
EgeI	GGCGCC	1 cut(s)	259
EheI	GGCGCC	1 cut(s)	259
FaeI	CATG	5 cut(s)	39, 282, 344, 797, 896
FaiI	YATR	9 cut(s)	37, 272, 280, 342, 425, 557, 746, 795, 894
FaqI	GGGAC	2 cut(s)	548, 843
FatI	CATG	5 cut(s)	35, 278, 340, 793, 892
FblI	GTMKAC	1 cut(s)	613
Fnu4HI	GCNGC	3 cut(s)	90, 553, 585
FokI	GGATG	7 cut(s)	218, 240, 337, 791, 814, 819, 920
FriOI	GRGCYC	2 cut(s)	118, 921
Fsp4HI	GCNGC	3 cut(s)	90, 553, 585
GlaI	GCGC	2 cut(s)	259, 569
GluI	GCNGC	3 cut(s)	90, 553, 585
GsaI	CCCAGC	1 cut(s)	193
GsuI	CTGGAG	1 cut(s)	935
HaeII	RGCGCY	1 cut(s)	261
HaeIII	GGCC	1 cut(s)	587
HhaI	GCGC	2 cut(s)	260, 570
Hin1I	GRCGYC	1 cut(s)	258
Hin1II	CATG	5 cut(s)	39, 282, 344, 797, 896
Hin6I	GCGC	2 cut(s)	258, 568
HinP1I	GCGC	2 cut(s)	258, 568
HincII	GTYRAC	1 cut(s)	614
HindII	GTYRAC	1 cut(s)	614
HindIII	AAGCTT	2 cut(s)	131, 870
HinfI	GANTC	3 cut(s)	536, 653, 674
HphI	GGTGA	2 cut(s)	720, 893
Hpy166II	GTNNAC	3 cut(s)	302, 614, 673
Hpy188I	TCNGA	4 cut(s)	113, 658, 699, 841
Hpy188III	TCNNGA	4 cut(s)	163, 507, 776, 914
Hpy8I	GTNNAC	3 cut(s)	302, 614, 673
Hpy99I	CGWCG	1 cut(s)	615
HpyAV	CCTTC	3 cut(s)	413, 606, 735
HpyCH4III	ACNGT	2 cut(s)	670, 865
HpyCH4IV	ACGT	1 cut(s)	610
HpyCH4V	TGCA	5 cut(s)	231, 254, 278, 555, 821
HpyF10VI	GCNNNNNNNGC	7 cut(s)	89, 139, 176, 228, 590, 788, 818
HpyF3I	CTNAG	7 cut(s)	93, 110, 117, 310, 455, 712, 759
HpySE526I	ACGT	1 cut(s)	610
Hsp92I	GRCGYC	1 cut(s)	258
Hsp92II	CATG	5 cut(s)	39, 282, 344, 797, 896
HspAI	GCGC	2 cut(s)	258, 568
KasI	GGCGCC	1 cut(s)	257
Kzo9I	GATC	1 cut(s)	910
LguI	GCTCTTC	1 cut(s)	73
LmnI	GCTCC	4 cut(s)	478, 724, 902, 916
Lsp1109I	GCAGC	2 cut(s)	76, 539
LweI	GCATC	3 cut(s)	218, 649, 769
MaeII	ACGT	1 cut(s)	610
MaeIII	GTNAC	3 cut(s)	27, 419, 478
MalI	GATC	1 cut(s)	912
MbiI	CCGCTC	1 cut(s)	905
MboI	GATC	1 cut(s)	910
MboII	GAAGA	6 cut(s)	90, 212, 398, 437, 486, 764
MhlI	GDGCHC	4 cut(s)	118, 475, 709, 921
MluCI	AATT	1 cut(s)	249
Mly113I	GGCGCC	1 cut(s)	258
MlyI	GAGTC	3 cut(s)	530, 662, 668
MmeI	TCCRAC	1 cut(s)	524
MseI	TTAA	2 cut(s)	738, 946
MvnI	CGCG	1 cut(s)	584
MwoI	GCNNNNNNNGC	7 cut(s)	89, 139, 176, 228, 590, 788, 818
NarI	GGCGCC	1 cut(s)	258
NdeII	GATC	1 cut(s)	910
NlaIII	CATG	5 cut(s)	39, 282, 344, 797, 896
NlaIV	GGNNCC	3 cut(s)	211, 259, 708
NspI	RCATGY	1 cut(s)	282
PaqCI	CACCTGC	1 cut(s)	637
PciSI	GCTCTTC	1 cut(s)	73
PkrI	GCNGC	3 cut(s)	91, 554, 586
PleI	GAGTC	3 cut(s)	530, 661, 668
PluTI	GGCGCC	1 cut(s)	261
PpsI	GAGTC	3 cut(s)	530, 661, 668
PshAI	GACNNNNGTC	1 cut(s)	678
Psp124BI	GAGCTC	2 cut(s)	118, 921
PspEI	GGTNACC	1 cut(s)	27
PspFI	CCCAGC	1 cut(s)	189
PspN4I	GGNNCC	3 cut(s)	211, 259, 708
PstI	CTGCAG	1 cut(s)	823
PstNI	CAGNNNCTG	1 cut(s)	758
SacI	GAGCTC	2 cut(s)	118, 921
SalI	GTCGAC	1 cut(s)	612
SapI	GCTCTTC	1 cut(s)	73
SaqAI	TTAA	2 cut(s)	738, 946
SatI	GCNGC	3 cut(s)	90, 553, 585
Sau3AI	GATC	1 cut(s)	910
SchI	GAGTC	3 cut(s)	530, 662, 668
SduI	GDGCHC	4 cut(s)	118, 475, 709, 921
SfaNI	GCATC	3 cut(s)	218, 649, 769
SfcI	CTRYAG	1 cut(s)	819
SfoI	GGCGCC	1 cut(s)	259
SmlI	CTYRAG	1 cut(s)	505
SmoI	CTYRAG	1 cut(s)	505
Sse9I	AATT	1 cut(s)	249
SsiI	CCGC	5 cut(s)	9, 220, 584, 722, 905
SspDI	GGCGCC	1 cut(s)	257
SstI	GAGCTC	2 cut(s)	118, 921
TaaI	ACNGT	2 cut(s)	670, 865
TaiI	ACGT	1 cut(s)	613
TaqI	TCGA	1 cut(s)	613
TasI	AATT	1 cut(s)	249
TauI	GCSGC	1 cut(s)	587
Tru1I	TTAA	2 cut(s)	738, 946
Tru9I	TTAA	2 cut(s)	738, 946
TscAI	CASTG	5 cut(s)	149, 673, 759, 823, 870
TseI	GCWGC	2 cut(s)	89, 552
TspDTI	ATGAA	2 cut(s)	6, 761
TspGWI	ACGGA	1 cut(s)	399
TspRI	CASTG	5 cut(s)	149, 673, 759, 823, 870
XceI	RCATGY	1 cut(s)	282
XmiI	GTMKAC	1 cut(s)	613

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.