Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0013883

Physical Location & Seq

Genomic Coordinates Forward (+)

16103928 .. 16106834

Gene Structure 2907 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G149000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGACAGGGGGTGGGTCGTCGGGGAGGTTACCAACATGGAAAGAGAGGGAGAACAACAAGAGGAGGGAGAGGAGGAGAAGAGCCATTGCTGCTAAGATATACTCTGGTCTCAGAGCTCAGGGCAGCTACAAGCTTCCTAAGCACTGCGACAACAACGAGGTCTTGAAAGCTCTCTGTGCTGAAGCTGGCTGGGTCGTTGAAGAAGATGGCACCACATACCGCAAGGGATGCAAGCCATCTCCAATGGAAATTGCAGGCACTCCAACAAATATGAGTGCATGTTCCTCTATTCAACAAAGCCCACAATCCTCAGCTTTCCCAAGTCCTGTACCATCCTACCATGCCAGTCCATCCTCCTCTTCCTTCCCAAGCCCAACTCGTTTCGATGGAAACCCCTCCTCTTACCTTCTTCCGTTCCTGCGTAACATAGCTTCCATTCCTACAAATCTTCCTCCTCTTAGAATATCCAATAGTGCGCCTGTAACTCCACCTCTTTCTTCTCCAACCTCTAGAGGTTCAAAGCGAAAACCTGACTGGGACTCCCTTACTAATGGCTGTCTAAACTCCTTGCGCCACCCTCTTTTCGCAGCTTCTGCCCCTTCAAGCCCTACGCGTCGCCACCATCTTACACCTGCCACAATACCAGAATGTGATGAGTCCGATGCTTCCACTGTGGACTCCGGTCGTTGGGTCAGTTTCCAGACAGGGGCACCATCAGTAGCTCCACCTTCACCCACATTTAATCTTATGAAACCGGTGGCTGAGCAGAGTGTTCTTCAGAACACTATTAATGGGCATGGGGGAATGACCTGGGGAAACACTACAGAGAGGGGACGAGGCTCAGAATTTGAGTTTGAGAGCGGCACACTGAAAGCTTGGGAGGGTGAGAGAATACATGAGGTAGGGGTGGATGATCTGGAGCTTACACTTGGAAATGGGAAGAACCATGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009741 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

BES1_N

Protein Analysis

318

Amino Acids

34.24

Weight (kDa)

9.05

Isoelectric Point (pI)

71.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013883)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36780
fragaria_vesca	FvH4_1g14040
malus_domestica	MD15G1267600.v1.1 MD15G1267800.v1.1
prunus_persica	Prupe.7G149000_v2.0.a1
pyrus_communis	pycom02g12160 pycom15g23310
rosa_chinensis	RchiOBHm_Chr2g0102631
rosa_laevigata	RLG00000017158
rosa_multiflora	Rmu_sc0003852.1_g000007
rosa_roxburghii	Rroxscaffold_2G00140430
rosa_rugosa	Rorug02G0108300
rosa_samantha	Rh2AG157000 Rh2BG163300 Rh2CG162400 Rh2DG162200
rosa_wichuraiana	Rw2G012180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	640
Acc36I	ACCTGC	1 cut(s)	640
AccB1I	GGYRCC	2 cut(s)	209, 709
AccBSI	CCGCTC	1 cut(s)	861
AccII	CGCG	1 cut(s)	613
AciI	CCGC	2 cut(s)	220, 861
AcsI	RAATTY	1 cut(s)	845
AcuI	CTGAAG	2 cut(s)	201, 761
AfaI	GTAC	1 cut(s)	330
AfiI	CCNNNNNNNGG	2 cut(s)	687, 706
AflIII	ACRYGT	1 cut(s)	611
AgeI	ACCGGT	1 cut(s)	754
AgsI	TTSAA	5 cut(s)	166, 200, 293, 519, 603
AjnI	CCWGG	1 cut(s)	809
Alw21I	GWGCWC	1 cut(s)	118
Alw26I	GTCTC	1 cut(s)	113
AlwNI	CAGNNNCTG	1 cut(s)	593
ApeKI	GCWGC	3 cut(s)	89, 123, 587
ApoI	RAATTY	1 cut(s)	845
AseI	ATTAAT	1 cut(s)	789
AsiGI	ACCGGT	1 cut(s)	754
AspLEI	GCGC	2 cut(s)	478, 573
AsuHPI	GGTGA	2 cut(s)	723, 896
BaeGI	GKGCMC	1 cut(s)	712
BanI	GGYRCC	2 cut(s)	209, 709
BanII	GRGCYC	1 cut(s)	118
BarI	GAAGNNNNNNTAC	2 cut(s)	415, 447
Bbv12I	GWGCWC	1 cut(s)	118
BbvCI	CCTCAGC	1 cut(s)	310
BbvI	GCAGC	3 cut(s)	76, 135, 599
BccI	CCATC	7 cut(s)	200, 244, 340, 358, 380, 630, 721
BciT130I	CCWGG	1 cut(s)	811
BcoDI	GTCTC	1 cut(s)	113
BfaI	CTAG	1 cut(s)	510
BfmI	CTRYAG	1 cut(s)	822
BfuAI	ACCTGC	1 cut(s)	640
BisI	GCNGC	4 cut(s)	90, 124, 588, 862
BlpI	GCTNAGC	1 cut(s)	762
BlsI	GCNGC	4 cut(s)	91, 125, 589, 863
Bme1390I	CCNGG	1 cut(s)	811
BmiI	GGNNCC	2 cut(s)	211, 711
BmrFI	CCNGG	1 cut(s)	811
BmrI	ACTGGG	1 cut(s)	544
BmsI	GCATC	2 cut(s)	218, 652
BmuI	ACTGGG	1 cut(s)	544
BoxI	GACNNNNGTC	1 cut(s)	681
BpmI	CTGGAG	1 cut(s)	938
Bpu10I	CCTNAGC	3 cut(s)	117, 138, 310
Bpu1102I	GCTNAGC	1 cut(s)	762
BsaI	GGTCTC	1 cut(s)	113
BsaJI	CCNNGG	1 cut(s)	810
BsaWI	WCCGGW	2 cut(s)	680, 754
BsaXI	ACNNNNNCTCC	2 cut(s)	524, 554
Bsc4I	CCNNNNNNNGG	2 cut(s)	687, 706
Bse118I	RCCGGY	1 cut(s)	754
Bse1I	ACTGG	2 cut(s)	345, 539
Bse3DI	GCAATG	1 cut(s)	84
BseBI	CCWGG	1 cut(s)	811
BseDI	CCNNGG	1 cut(s)	810
BseGI	GGATG	4 cut(s)	233, 332, 350, 916
BseLI	CCNNNNNNNGG	2 cut(s)	687, 706
BseMI	GCAATG	1 cut(s)	84
BseMII	CTCAG	5 cut(s)	124, 131, 324, 753, 855
BseNI	ACTGG	2 cut(s)	345, 539
BseRI	GAGGAG	6 cut(s)	76, 85, 88, 346, 388, 444
BseSI	GKGCMC	1 cut(s)	712
BseXI	GCAGC	3 cut(s)	76, 135, 599
BseYI	CCCAGC	1 cut(s)	189
Bsh1236I	CGCG	1 cut(s)	613
Bsh1285I	CGRYCG	1 cut(s)	685
BshNI	GGYRCC	2 cut(s)	209, 709
BshTI	ACCGGT	1 cut(s)	754
BsiEI	CGRYCG	1 cut(s)	685
BsiHKAI	GWGCWC	1 cut(s)	118
BsiSI	CCGG	2 cut(s)	681, 755
BslFI	GGGAC	2 cut(s)	551, 846
BslI	CCNNNNNNNGG	2 cut(s)	687, 706
BsmAI	GTCTC	1 cut(s)	113
BsmFI	GGGAC	2 cut(s)	551, 846
Bso31I	GGTCTC	1 cut(s)	113
Bsp1286I	GDGCHC	2 cut(s)	118, 712
Bsp143I	GATC	1 cut(s)	913
Bsp1720I	GCTNAGC	1 cut(s)	762
BspACI	CCGC	2 cut(s)	220, 861
BspCNI	CTCAG	5 cut(s)	123, 130, 323, 754, 854
BspFNI	CGCG	1 cut(s)	613
BspLI	GGNNCC	2 cut(s)	211, 711
BspMI	ACCTGC	1 cut(s)	640
BspQI	GCTCTTC	1 cut(s)	73
BspT107I	GGYRCC	2 cut(s)	209, 709
BspTNI	GGTCTC	1 cut(s)	113
BsrBI	CCGCTC	1 cut(s)	861
BsrDI	GCAATG	1 cut(s)	84
BsrFI	RCCGGY	1 cut(s)	754
BsrI	ACTGG	2 cut(s)	345, 539
BssAI	RCCGGY	1 cut(s)	754
BssECI	CCNNGG	1 cut(s)	810
BssMI	GATC	1 cut(s)	913
Bst2UI	CCWGG	1 cut(s)	811
Bst4CI	ACNGT	1 cut(s)	673
Bst6I	CTCTTC	2 cut(s)	73, 364
BstAPI	GCANNNNNTGC	2 cut(s)	228, 593
BstC8I	GCNNGC	3 cut(s)	187, 233, 256
BstDEI	CTNAG	8 cut(s)	93, 110, 117, 138, 310, 458, 762, 841
BstEII	GGTNACC	1 cut(s)	27
BstF5I	GGATG	4 cut(s)	233, 332, 350, 916
BstFNI	CGCG	1 cut(s)	613
BstHHI	GCGC	2 cut(s)	478, 573
BstKTI	GATC	1 cut(s)	916
BstMAI	GTCTC	1 cut(s)	113
BstMBI	GATC	1 cut(s)	913
BstMCI	CGRYCG	1 cut(s)	685
BstMWI	GCNNNNNNNGC	5 cut(s)	89, 139, 176, 228, 593
BstNI	CCWGG	1 cut(s)	811
BstNSI	RCATGY	1 cut(s)	282
BstPAI	GACNNNNGTC	1 cut(s)	681
BstPI	GGTNACC	1 cut(s)	27
BstSCI	CCNGG	1 cut(s)	809
BstSFI	CTRYAG	1 cut(s)	822
BstSLI	GKGCMC	1 cut(s)	712
BstUI	CGCG	1 cut(s)	613
BstV1I	GCAGC	3 cut(s)	76, 135, 599
BtsCI	GGATG	4 cut(s)	233, 332, 350, 916
BtsI	GCAGTG	1 cut(s)	142
BtsIMutI	CAGTG	3 cut(s)	142, 669, 866
BveI	ACCTGC	1 cut(s)	640
Cac8I	GCNNGC	3 cut(s)	187, 233, 256
CaiI	CAGNNNCTG	1 cut(s)	593
CfoI	GCGC	2 cut(s)	478, 573
Cfr10I	RCCGGY	1 cut(s)	754
CseI	GACGC	1 cut(s)	602
Csp6I	GTAC	1 cut(s)	329
CspAI	ACCGGT	1 cut(s)	754
CviAII	CATG	6 cut(s)	36, 279, 341, 797, 896, 947
CviQI	GTAC	1 cut(s)	329
DdeI	CTNAG	8 cut(s)	93, 110, 117, 138, 310, 458, 762, 841
DpnI	GATC	1 cut(s)	915
DpnII	GATC	1 cut(s)	913
Eam1104I	CTCTTC	2 cut(s)	73, 364
EarI	CTCTTC	2 cut(s)	73, 364
Ecl136II	GAGCTC	1 cut(s)	116
Eco24I	GRGCYC	1 cut(s)	118
Eco31I	GGTCTC	1 cut(s)	113
Eco53kI	GAGCTC	1 cut(s)	116
Eco57I	CTGAAG	2 cut(s)	201, 761
Eco91I	GGTNACC	1 cut(s)	27
EcoICRI	GAGCTC	1 cut(s)	116
EcoO65I	GGTNACC	1 cut(s)	27
EcoRII	CCWGG	1 cut(s)	809
EcoT38I	GRGCYC	1 cut(s)	118
FaeI	CATG	6 cut(s)	39, 282, 344, 800, 899, 950
FaqI	GGGAC	2 cut(s)	551, 846
FatI	CATG	6 cut(s)	35, 278, 340, 796, 895, 946
Fnu4HI	GCNGC	4 cut(s)	90, 124, 588, 862
FokI	GGATG	4 cut(s)	240, 319, 337, 923
FriOI	GRGCYC	1 cut(s)	118
Fsp4HI	GCNGC	4 cut(s)	90, 124, 588, 862
FspBI	CTAG	1 cut(s)	510
GlaI	GCGC	2 cut(s)	477, 572
GluI	GCNGC	4 cut(s)	90, 124, 588, 862
GsaI	CCCAGC	1 cut(s)	193
GsuI	CTGGAG	1 cut(s)	938
HapII	CCGG	2 cut(s)	681, 755
HgaI	GACGC	1 cut(s)	602
HhaI	GCGC	2 cut(s)	478, 573
Hin1II	CATG	6 cut(s)	39, 282, 344, 800, 899, 950
Hin6I	GCGC	2 cut(s)	476, 571
HinP1I	GCGC	2 cut(s)	476, 571
HindIII	AAGCTT	2 cut(s)	131, 873
HinfI	GANTC	3 cut(s)	539, 656, 677
HpaII	CCGG	2 cut(s)	681, 755
HphI	GGTGA	2 cut(s)	723, 896
Hpy166II	GTNNAC	1 cut(s)	676
Hpy188I	TCNGA	4 cut(s)	113, 661, 780, 844
Hpy188III	TCNNGA	4 cut(s)	163, 510, 700, 917
Hpy8I	GTNNAC	1 cut(s)	676
Hpy99I	CGWCG	2 cut(s)	22, 618
HpyAV	CCTTC	4 cut(s)	373, 416, 609, 738
HpyCH4III	ACNGT	1 cut(s)	673
HpyCH4V	TGCA	3 cut(s)	231, 254, 278
HpyF10VI	GCNNNNNNNGC	5 cut(s)	89, 139, 176, 228, 593
HpyF3I	CTNAG	8 cut(s)	93, 110, 117, 138, 310, 458, 762, 841
Hsp92II	CATG	6 cut(s)	39, 282, 344, 800, 899, 950
HspAI	GCGC	2 cut(s)	476, 571
Kzo9I	GATC	1 cut(s)	913
LguI	GCTCTTC	1 cut(s)	73
LmnI	GCTCC	2 cut(s)	727, 919
Lsp1109I	GCAGC	3 cut(s)	76, 135, 599
LweI	GCATC	2 cut(s)	218, 652
MaeI	CTAG	1 cut(s)	510
MaeIII	GTNAC	3 cut(s)	27, 422, 481
MalI	GATC	1 cut(s)	915
MbiI	CCGCTC	1 cut(s)	861
MboI	GATC	1 cut(s)	913
MboII	GAAGA	9 cut(s)	90, 212, 215, 351, 401, 440, 489, 767, 952
MhlI	GDGCHC	2 cut(s)	118, 712
MluCI	AATT	2 cut(s)	249, 845
MluI	ACGCGT	1 cut(s)	611
MlyI	GAGTC	3 cut(s)	533, 665, 671
MmeI	TCCRAC	2 cut(s)	287, 527
MseI	TTAA	3 cut(s)	741, 789, 952
MspI	CCGG	2 cut(s)	681, 755
MspR9I	CCNGG	1 cut(s)	811
MvaI	CCWGG	1 cut(s)	811
MvnI	CGCG	1 cut(s)	613
MwoI	GCNNNNNNNGC	5 cut(s)	89, 139, 176, 228, 593
NdeII	GATC	1 cut(s)	913
NlaIII	CATG	6 cut(s)	39, 282, 344, 800, 899, 950
NlaIV	GGNNCC	2 cut(s)	211, 711
NspI	RCATGY	1 cut(s)	282
PaqCI	CACCTGC	1 cut(s)	640
PciSI	GCTCTTC	1 cut(s)	73
PinAI	ACCGGT	1 cut(s)	754
PkrI	GCNGC	4 cut(s)	91, 125, 589, 863
PleI	GAGTC	3 cut(s)	533, 664, 671
PpsI	GAGTC	3 cut(s)	533, 664, 671
PshAI	GACNNNNGTC	1 cut(s)	681
PshBI	ATTAAT	1 cut(s)	789
Psp124BI	GAGCTC	1 cut(s)	118
Psp6I	CCWGG	1 cut(s)	809
PspEI	GGTNACC	1 cut(s)	27
PspFI	CCCAGC	1 cut(s)	189
PspGI	CCWGG	1 cut(s)	809
PspN4I	GGNNCC	2 cut(s)	211, 711
PstNI	CAGNNNCTG	1 cut(s)	593
RsaI	GTAC	1 cut(s)	330
RsaNI	GTAC	1 cut(s)	329
SacI	GAGCTC	1 cut(s)	118
SapI	GCTCTTC	1 cut(s)	73
SaqAI	TTAA	3 cut(s)	741, 789, 952
SatI	GCNGC	4 cut(s)	90, 124, 588, 862
Sau3AI	GATC	1 cut(s)	913
SchI	GAGTC	3 cut(s)	533, 665, 671
ScrFI	CCNGG	1 cut(s)	811
SduI	GDGCHC	2 cut(s)	118, 712
SfaNI	GCATC	2 cut(s)	218, 652
SfcI	CTRYAG	1 cut(s)	822
Sse9I	AATT	2 cut(s)	249, 845
SsiI	CCGC	2 cut(s)	220, 861
SspMI	CTAG	1 cut(s)	510
SstI	GAGCTC	1 cut(s)	118
StyD4I	CCNGG	1 cut(s)	809
TaaI	ACNGT	1 cut(s)	673
TaqI	TCGA	1 cut(s)	384
TasI	AATT	2 cut(s)	249, 845
TauI	GCSGC	1 cut(s)	864
Tru1I	TTAA	3 cut(s)	741, 789, 952
Tru9I	TTAA	3 cut(s)	741, 789, 952
TscAI	CASTG	3 cut(s)	149, 676, 873
TseI	GCWGC	3 cut(s)	89, 123, 587
TspDTI	ATGAA	1 cut(s)	764
TspGWI	ACGGA	1 cut(s)	402
TspRI	CASTG	3 cut(s)	149, 676, 873
VspI	ATTAAT	1 cut(s)	789
XapI	RAATTY	1 cut(s)	845
XbaI	TCTAGA	1 cut(s)	509
XceI	RCATGY	1 cut(s)	282
XspI	CTAG	1 cut(s)	510

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.