RchiOBHm_Chr2g0102631

BES1 BZR1 homolog protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0013883
Physical Location & Seq
Reverse (-)
14120795 .. 14123511
2717 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ47704

Sequence Viewer

Length: 948 bp
ATGACCGGCGGTGGGTCATCGGGGAGGTTACCGACGTGGAAGGAGAGGGAGAACAACAAGAGGAGGGAGCGGAGGAGGAGAGCCATTGCTGCTAAGATATACTCTGGCCTCAGAGCCCAGGGCAGCTACAAGCTTCCCAAGCACTGCGACAACAACGAGGTCTTGAAAGCTCTATGTGCTGAAGCTGGTTGGGTCGTTGAAGAAGATGGCACTACTTACCGCAAGAGGCTGCACTCCCACAAATATGAGTGCGTGTTCATCTATGCAACCAAGCCCACAATCCTCATCTTTCCCAAGTCCTGTGCCGTCATACCATGCCAGTCCATCATCGTCCTCCTTTCCCAGCCCAACTCGTTTCGATGGAAACCCCTCCTCTTACCATCAAAACCCTCCTCTTACCTTCTTCCATTCCTGCATAACTTGGCTTCCATTCCCACGAATCTTCCTCCTCTTAGAATTTCCAACAGTGCTCCTGTCACTCCTCCTCTTTCTTCTCCAACCTCTAGAGGATCGAAGCGGAAACCTGACTGGGAATCCCTTACTAATGGCTGCATAAACTCCTTGCGCCACCCCCTTTTTGCAGCCTCTGCCCCTTCAAGTCCTACTCGGCGCCACCATCTTGCACCTGCCACAATTCCAGAATGTGACGAGTCTGATGCTTCCACAGTGGACTCCGGTCGGTGGGTGAGTTTCCAAACAGGGGTACCTTCAGTAGCTCCACCTTCGCCCACATTTAATCTTATGAAACCGGTGGCTGAGCAGAATGTTCTTCAGCAGACTGTTGTTGGGAATGGGGGGATTGGTTGGGGGAACCCTGTGGAGAGGGCACGAGGCTCCGAGTTTGAGTTTGAGAGTGGCAGGCTGAAAGCTTGGGAGGGTGAGAGAATACACGAGGTTGGAGTGGAAGATCTGGAGCTTACACTTGGGAATGGGAAGATGCATACTTAA

Protein Analysis

315

Amino Acids

34.75

Weight (kDa)

9.51

Isoelectric Point (pI)

62.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BES1_N PF05687 6 - 81 4.2e-44 BES1/BZR1 plant transcription factor, N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013883)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G36780
fragaria_vesca FvH4_1g14040
malus_domestica MD15G1267600.v1.1 MD15G1267800.v1.1
prunus_persica Prupe.7G149000_v2.0.a1
pyrus_communis pycom02g12160 pycom15g23310
rosa_chinensis RchiOBHm_Chr2g0102631
rosa_laevigata RLG00000017158
rosa_multiflora Rmu_sc0003852.1_g000007
rosa_roxburghii Rroxscaffold_2G00140430
rosa_rugosa Rorug02G0108300
rosa_samantha Rh2AG157000 Rh2BG163300 Rh2CG162400 Rh2DG162200
rosa_wichuraiana Rw2G012180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 634
Acc36I ACCTGC 1 cut(s) 634
Acc65I GGTACC 1 cut(s) 703
AccB1I GGYRCC 2 cut(s) 609, 703
AccBSI CCGCTC 1 cut(s) 70
AciI CCGC 4 cut(s) 9, 70, 220, 517
AclWI GGATC 1 cut(s) 517
AcsI RAATTY 1 cut(s) 456
AcuI CTGAAG 3 cut(s) 201, 693, 755
AcyI GRCGYC 1 cut(s) 610
AfaI GTAC 1 cut(s) 705
AfiI CCNNNNNNNGG 3 cut(s) 12, 681, 700
AgeI ACCGGT 1 cut(s) 748
AgsI TTSAA 3 cut(s) 166, 200, 597
AjiI CACGTC 1 cut(s) 36
AjnI CCWGG 1 cut(s) 117
AluBI AGCT 7 cut(s) 126, 133, 170, 185, 716, 869, 916
AluI AGCT 7 cut(s) 126, 133, 170, 185, 716, 869, 916
Alw21I GWGCWC 1 cut(s) 472
AlwI GGATC 1 cut(s) 517
AlwNI CAGNNNCTG 1 cut(s) 587
AoxI GGCC 1 cut(s) 106
ApeKI GCWGC 5 cut(s) 89, 123, 229, 549, 581
ApoI RAATTY 1 cut(s) 456
AsiGI ACCGGT 1 cut(s) 748
Asp718I GGTACC 1 cut(s) 703
AspLEI GCGC 2 cut(s) 567, 612
AsuHPI GGTGA 2 cut(s) 697, 890
BaeGI GKGCMC 1 cut(s) 829
BaeI ACNNNNGTAYC 2 cut(s) 687, 720
BanI GGYRCC 2 cut(s) 609, 703
BanII GRGCYC 1 cut(s) 118
BauI CACGAG 2 cut(s) 828, 890
Bbv12I GWGCWC 1 cut(s) 472
BbvI GCAGC 5 cut(s) 76, 135, 216, 536, 593
BccI CCATC 5 cut(s) 200, 332, 354, 388, 624
BceAI ACGGC 1 cut(s) 290
BcgI CGANNNNNNTGC 2 cut(s) 638, 672
BciT130I CCWGG 1 cut(s) 119
BfaI CTAG 1 cut(s) 504
BfoI RGCGCY 1 cut(s) 613
BfuAI ACCTGC 1 cut(s) 634
BglII AGATCT 1 cut(s) 907
BisI GCNGC 5 cut(s) 90, 124, 230, 550, 582
BlpI GCTNAGC 1 cut(s) 756
BlsI GCNGC 5 cut(s) 91, 125, 231, 551, 583
Bme1390I CCNGG 1 cut(s) 119
BmgBI CACGTC 1 cut(s) 36
BmiI GGNNCC 4 cut(s) 611, 705, 812, 835
BmrFI CCNGG 1 cut(s) 119
BmrI ACTGGG 1 cut(s) 538
BmsI GCATC 2 cut(s) 646, 927
BmuI ACTGGG 1 cut(s) 538
BoxI GACNNNNGTC 1 cut(s) 675
BpmI CTGGAG 1 cut(s) 932
Bpu1102I GCTNAGC 1 cut(s) 756
BsaHI GRCGYC 1 cut(s) 610
BsaJI CCNNGG 2 cut(s) 117, 118
BsaWI WCCGGW 2 cut(s) 674, 748
Bsc4I CCNNNNNNNGG 3 cut(s) 12, 681, 700
Bse118I RCCGGY 2 cut(s) 5, 748
Bse1I ACTGG 2 cut(s) 319, 533
Bse3DI GCAATG 1 cut(s) 84
BseBI CCWGG 1 cut(s) 119
BseDI CCNNGG 2 cut(s) 117, 118
BseLI CCNNNNNNNGG 3 cut(s) 12, 681, 700
BseMI GCAATG 1 cut(s) 84
BseMII CTCAG 2 cut(s) 124, 747
BseNI ACTGG 2 cut(s) 319, 533
BseRI GAGGAG 8 cut(s) 76, 88, 91, 362, 382, 438, 471, 474
BseSI GKGCMC 1 cut(s) 829
BseXI GCAGC 5 cut(s) 76, 135, 216, 536, 593
BseYI CCCAGC 1 cut(s) 342
BsgI GTGCAG 1 cut(s) 215
Bsh1285I CGRYCG 1 cut(s) 679
BshFI GGCC 1 cut(s) 108
BshNI GGYRCC 2 cut(s) 609, 703
BshTI ACCGGT 1 cut(s) 748
BsiEI CGRYCG 1 cut(s) 679
BsiHKAI GWGCWC 1 cut(s) 472
BsiSI CCGG 3 cut(s) 6, 675, 749
BslI CCNNNNNNNGG 3 cut(s) 12, 681, 700
BsnI GGCC 1 cut(s) 108
Bsp1286I GDGCHC 3 cut(s) 118, 472, 829
Bsp143I GATC 2 cut(s) 509, 907
Bsp1720I GCTNAGC 1 cut(s) 756
BspACI CCGC 4 cut(s) 9, 70, 220, 517
BspANI GGCC 1 cut(s) 108
BspCNI CTCAG 2 cut(s) 123, 748
BspLI GGNNCC 4 cut(s) 611, 705, 812, 835
BspMI ACCTGC 1 cut(s) 634
BspPI GGATC 1 cut(s) 517
BspT107I GGYRCC 2 cut(s) 609, 703
BsrBI CCGCTC 1 cut(s) 70
BsrDI GCAATG 1 cut(s) 84
BsrFI RCCGGY 2 cut(s) 5, 748
BsrI ACTGG 2 cut(s) 319, 533
BssAI RCCGGY 2 cut(s) 5, 748
BssECI CCNNGG 2 cut(s) 117, 118
BssMI GATC 2 cut(s) 509, 907
BssNI GRCGYC 1 cut(s) 610
BssSI CACGAG 2 cut(s) 828, 890
Bst2BI CACGAG 2 cut(s) 828, 890
Bst2UI CCWGG 1 cut(s) 119
Bst4CI ACNGT 3 cut(s) 467, 667, 781
BstACI GRCGYC 1 cut(s) 610
BstAPI GCANNNNNTGC 1 cut(s) 587
BstC8I GCNNGC 1 cut(s) 860
BstDEI CTNAG 4 cut(s) 93, 110, 452, 756
BstEII GGTNACC 1 cut(s) 27
BstH2I RGCGCY 1 cut(s) 613
BstHHI GCGC 2 cut(s) 567, 612
BstKTI GATC 2 cut(s) 512, 910
BstMBI GATC 2 cut(s) 509, 907
BstMCI CGRYCG 1 cut(s) 679
BstMWI GCNNNNNNNGC 4 cut(s) 89, 139, 176, 587
BstNI CCWGG 1 cut(s) 119
BstPAI GACNNNNGTC 1 cut(s) 675
BstPI GGTNACC 1 cut(s) 27
BstSCI CCNGG 1 cut(s) 117
BstSLI GKGCMC 1 cut(s) 829
BstV1I GCAGC 5 cut(s) 76, 135, 216, 536, 593
BstX2I RGATCY 1 cut(s) 907
BstYI RGATCY 1 cut(s) 907
BsuRI GGCC 1 cut(s) 108
BtrI CACGTC 1 cut(s) 36
BtsI GCAGTG 1 cut(s) 142
BtsIMutI CAGTG 3 cut(s) 142, 472, 672
BveI ACCTGC 1 cut(s) 634
Cac8I GCNNGC 1 cut(s) 860
CaiI CAGNNNCTG 1 cut(s) 587
CfoI GCGC 2 cut(s) 567, 612
Cfr10I RCCGGY 2 cut(s) 5, 748
Csp6I GTAC 1 cut(s) 704
CspAI ACCGGT 1 cut(s) 748
CviAII CATG 1 cut(s) 315
CviQI GTAC 1 cut(s) 704
DdeI CTNAG 4 cut(s) 93, 110, 452, 756
DinI GGCGCC 1 cut(s) 611
DpnI GATC 2 cut(s) 511, 909
DpnII GATC 2 cut(s) 509, 907
Eco24I GRGCYC 1 cut(s) 118
Eco57I CTGAAG 3 cut(s) 201, 693, 755
Eco91I GGTNACC 1 cut(s) 27
EcoO65I GGTNACC 1 cut(s) 27
EcoRII CCWGG 1 cut(s) 117
EcoT22I ATGCAT 1 cut(s) 942
EcoT38I GRGCYC 1 cut(s) 118
EgeI GGCGCC 1 cut(s) 611
EheI GGCGCC 1 cut(s) 611
FaeI CATG 1 cut(s) 318
FatI CATG 1 cut(s) 314
Fnu4HI GCNGC 5 cut(s) 90, 124, 230, 550, 582
FriOI GRGCYC 1 cut(s) 118
Fsp4HI GCNGC 5 cut(s) 90, 124, 230, 550, 582
FspBI CTAG 1 cut(s) 504
GlaI GCGC 2 cut(s) 566, 611
GluI GCNGC 5 cut(s) 90, 124, 230, 550, 582
GsaI CCCAGC 1 cut(s) 346
GsuI CTGGAG 1 cut(s) 932
HaeII RGCGCY 1 cut(s) 613
HaeIII GGCC 1 cut(s) 108
HapII CCGG 3 cut(s) 6, 675, 749
HhaI GCGC 2 cut(s) 567, 612
Hin1I GRCGYC 1 cut(s) 610
Hin1II CATG 1 cut(s) 318
Hin6I GCGC 2 cut(s) 565, 610
HinP1I GCGC 2 cut(s) 565, 610
HindIII AAGCTT 2 cut(s) 131, 867
HinfI GANTC 4 cut(s) 439, 533, 650, 671
HpaII CCGG 3 cut(s) 6, 675, 749
HphI GGTGA 2 cut(s) 697, 890
Hpy166II GTNNAC 1 cut(s) 670
Hpy188I TCNGA 3 cut(s) 113, 655, 838
Hpy188III TCNNGA 4 cut(s) 163, 504, 638, 911
Hpy8I GTNNAC 1 cut(s) 670
Hpy99I CGWCG 1 cut(s) 37
HpyAV CCTTC 5 cut(s) 34, 410, 603, 717, 732
HpyCH4III ACNGT 3 cut(s) 467, 667, 781
HpyCH4IV ACGT 1 cut(s) 35
HpyCH4V TGCA 7 cut(s) 232, 266, 415, 552, 581, 623, 940
HpyF10VI GCNNNNNNNGC 4 cut(s) 89, 139, 176, 587
HpyF3I CTNAG 4 cut(s) 93, 110, 452, 756
HpySE526I ACGT 1 cut(s) 35
Hsp92I GRCGYC 1 cut(s) 610
Hsp92II CATG 1 cut(s) 318
HspAI GCGC 2 cut(s) 565, 610
KasI GGCGCC 1 cut(s) 609
KpnI GGTACC 1 cut(s) 707
Kzo9I GATC 2 cut(s) 509, 907
LmnI GCTCC 5 cut(s) 67, 475, 721, 839, 913
Lsp1109I GCAGC 5 cut(s) 76, 135, 216, 536, 593
LweI GCATC 2 cut(s) 646, 927
MaeI CTAG 1 cut(s) 504
MaeII ACGT 1 cut(s) 35
MaeIII GTNAC 3 cut(s) 27, 475, 644
MalI GATC 2 cut(s) 511, 909
MbiI CCGCTC 1 cut(s) 70
MboI GATC 2 cut(s) 509, 907
MboII GAAGA 8 cut(s) 212, 215, 395, 434, 483, 761, 917, 946
MflI RGATCY 1 cut(s) 907
MhlI GDGCHC 3 cut(s) 118, 472, 829
MluCI AATT 2 cut(s) 456, 633
Mly113I GGCGCC 1 cut(s) 610
MlyI GAGTC 2 cut(s) 659, 665
MmeI TCCRAC 3 cut(s) 486, 521, 877
Mph1103I ATGCAT 1 cut(s) 942
MseI TTAA 2 cut(s) 735, 946
MslI CAYNNNNRTG 1 cut(s) 243
MspI CCGG 3 cut(s) 6, 675, 749
MspR9I CCNGG 1 cut(s) 119
MvaI CCWGG 1 cut(s) 119
MwoI GCNNNNNNNGC 4 cut(s) 89, 139, 176, 587
NarI GGCGCC 1 cut(s) 610
NdeII GATC 2 cut(s) 509, 907
NlaIII CATG 1 cut(s) 318
NlaIV GGNNCC 4 cut(s) 611, 705, 812, 835
NmeAIII GCCGAG 1 cut(s) 586
NmuCI GTSAC 2 cut(s) 475, 644
NsiI ATGCAT 1 cut(s) 942
PaqCI CACCTGC 1 cut(s) 634
PasI CCCWGGG 1 cut(s) 118
PfeI GAWTC 2 cut(s) 439, 533
PinAI ACCGGT 1 cut(s) 748
PkrI GCNGC 5 cut(s) 91, 125, 231, 551, 583
PleI GAGTC 2 cut(s) 658, 665
PluTI GGCGCC 1 cut(s) 613
PpsI GAGTC 2 cut(s) 658, 665
PshAI GACNNNNGTC 1 cut(s) 675
Psp6I CCWGG 1 cut(s) 117
PspEI GGTNACC 1 cut(s) 27
PspFI CCCAGC 1 cut(s) 342
PspGI CCWGG 1 cut(s) 117
PspN4I GGNNCC 4 cut(s) 611, 705, 812, 835
PstNI CAGNNNCTG 1 cut(s) 587
PsuI RGATCY 1 cut(s) 907
RsaI GTAC 1 cut(s) 705
RsaNI GTAC 1 cut(s) 704
RseI CAYNNNNRTG 1 cut(s) 243
SaqAI TTAA 2 cut(s) 735, 946
SatI GCNGC 5 cut(s) 90, 124, 230, 550, 582
Sau3AI GATC 2 cut(s) 509, 907
SchI GAGTC 2 cut(s) 659, 665
ScrFI CCNGG 1 cut(s) 119
SduI GDGCHC 3 cut(s) 118, 472, 829
SfaNI GCATC 2 cut(s) 646, 927
SfoI GGCGCC 1 cut(s) 611
SmiMI CAYNNNNRTG 1 cut(s) 243
Sse9I AATT 2 cut(s) 456, 633
SsiI CCGC 4 cut(s) 9, 70, 220, 517
SspDI GGCGCC 1 cut(s) 609
SspMI CTAG 1 cut(s) 504
StyD4I CCNGG 1 cut(s) 117
TaaI ACNGT 3 cut(s) 467, 667, 781
TaiI ACGT 1 cut(s) 38
TaqI TCGA 2 cut(s) 358, 512
TasI AATT 2 cut(s) 456, 633
TfiI GAWTC 2 cut(s) 439, 533
Tru1I TTAA 2 cut(s) 735, 946
Tru9I TTAA 2 cut(s) 735, 946
TscAI CASTG 3 cut(s) 149, 472, 672
TseFI GTSAC 2 cut(s) 475, 644
TseI GCWGC 5 cut(s) 89, 123, 229, 549, 581
Tsp45I GTSAC 2 cut(s) 475, 644
TspDTI ATGAA 2 cut(s) 247, 758
TspRI CASTG 3 cut(s) 149, 472, 672
XapI RAATTY 1 cut(s) 456
XbaI TCTAGA 1 cut(s) 503
XspI CTAG 1 cut(s) 504
Zsp2I ATGCAT 1 cut(s) 942
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.