Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0017575

Physical Location & Seq

Genomic Coordinates Reverse (-)

8127842 .. 8128516

Gene Structure 675 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g14570.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGTGTCGCAGACGATTGCCGATGAAGACAACGACAACGATGATGACGTCGGTTACCGATTCCCTGCTCGACAACCTCATGCACCGTCTACTTACTCCAGCAATGGCGCCAATAACAGCGGGAGTGGCCTTCCGGCGATTTCGACGACTCAGCCTGCTAGATCTCCGTCTCTGGCGTTTGCTCGGAATTTTGTATTGCATACTACTTCAGTTCGTTCAGCATCAGCAGGAAGACCCTCAGTGTCGGCGCTGTCACCTCAACGCTCAACGATGGCTAGCACCGCGACGCTCGAAGACAGCCGATGCTTGAAGCCTGACCGGCTCACCAGTTGGAACAGCCACCGGTTTGGGATGATGCTCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0007049 GO:0008150 GO:0009825 GO:0009987 GO:0016020 GO:0016049 GO:0022402 GO:0030135 GO:0030136 GO:0031410 GO:0031982 GO:0032506 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0051301 GO:0061640 GO:0071944 GO:0097708 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

122

Amino Acids

12.97

Weight (kDa)

8.0

Isoelectric Point (pI)

53.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0017575)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g14570 FvH4_3g24840
malus_domestica	MD06G1132800.v1.1
rosa_laevigata	RLG00000008407 RLG00000016476 RLG00000022590
rosa_multiflora	Rmu_sc0003990.1_g000002
rosa_samantha	Rh1CG261300 Rh4CG007400 Rh4CG180700 Rh5AG034800 Rh5CG037200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	51
AccB1I	GGYRCC	1 cut(s)	107
AccI	GTMKAC	1 cut(s)	89
AccII	CGCG	1 cut(s)	284
AciI	CCGC	2 cut(s)	120, 282
AcsI	RAATTY	1 cut(s)	187
AcuI	CTGAAG	1 cut(s)	192
AcyI	GRCGYC	2 cut(s)	48, 108
AgeI	ACCGGT	1 cut(s)	342
AgsI	TTSAA	1 cut(s)	310
Alw26I	GTCTC	1 cut(s)	174
AoxI	GGCC	1 cut(s)	127
ApoI	RAATTY	1 cut(s)	187
AsiGI	ACCGGT	1 cut(s)	342
AspLEI	GCGC	2 cut(s)	110, 250
AsuHPI	GGTGA	2 cut(s)	246, 316
AsuNHI	GCTAGC	1 cut(s)	275
BanI	GGYRCC	1 cut(s)	107
BbsI	GAAGAC	3 cut(s)	33, 238, 300
BccI	CCATC	1 cut(s)	265
BcoDI	GTCTC	1 cut(s)	174
BfaI	CTAG	2 cut(s)	159, 276
BfoI	RGCGCY	2 cut(s)	111, 251
BglI	GCCNNNNNGGC	1 cut(s)	319
BglII	AGATCT	1 cut(s)	161
BmiI	GGNNCC	1 cut(s)	109
BmsI	GCATC	3 cut(s)	230, 293, 345
BmtI	GCTAGC	1 cut(s)	279
BpiI	GAAGAC	3 cut(s)	33, 238, 300
BpmI	CTGGAG	1 cut(s)	82
BsaHI	GRCGYC	2 cut(s)	48, 108
BsaWI	WCCGGW	1 cut(s)	342
Bse118I	RCCGGY	2 cut(s)	318, 342
Bse1I	ACTGG	1 cut(s)	327
Bse3DI	GCAATG	1 cut(s)	109
BseGI	GGATG	1 cut(s)	357
BseMI	GCAATG	1 cut(s)	109
BseMII	CTCAG	2 cut(s)	164, 252
BseNI	ACTGG	1 cut(s)	327
Bsh1236I	CGCG	1 cut(s)	284
BshFI	GGCC	1 cut(s)	129
BshNI	GGYRCC	1 cut(s)	107
BshTI	ACCGGT	1 cut(s)	342
BsiSI	CCGG	3 cut(s)	134, 319, 343
BsmAI	GTCTC	1 cut(s)	174
BsmBI	CGTCTC	1 cut(s)	174
BsnI	GGCC	1 cut(s)	129
Bsp143I	GATC	1 cut(s)	161
BspACI	CCGC	2 cut(s)	120, 282
BspANI	GGCC	1 cut(s)	129
BspCNI	CTCAG	2 cut(s)	163, 251
BspFNI	CGCG	1 cut(s)	284
BspLI	GGNNCC	1 cut(s)	109
BspOI	GCTAGC	1 cut(s)	279
BspT107I	GGYRCC	1 cut(s)	107
BsrDI	GCAATG	1 cut(s)	109
BsrFI	RCCGGY	2 cut(s)	318, 342
BsrI	ACTGG	1 cut(s)	327
BssAI	RCCGGY	2 cut(s)	318, 342
BssMI	GATC	1 cut(s)	161
BssNI	GRCGYC	2 cut(s)	48, 108
Bst4CI	ACNGT	1 cut(s)	87
BstACI	GRCGYC	2 cut(s)	48, 108
BstC8I	GCNNGC	2 cut(s)	156, 277
BstDEI	CTNAG	2 cut(s)	150, 238
BstEII	GGTNACC	1 cut(s)	53
BstF5I	GGATG	1 cut(s)	357
BstFNI	CGCG	1 cut(s)	284
BstH2I	RGCGCY	2 cut(s)	111, 251
BstHHI	GCGC	2 cut(s)	110, 250
BstKTI	GATC	1 cut(s)	164
BstMAI	GTCTC	1 cut(s)	174
BstMBI	GATC	1 cut(s)	161
BstMWI	GCNNNNNNNGC	3 cut(s)	126, 281, 319
BstPI	GGTNACC	1 cut(s)	53
BstUI	CGCG	1 cut(s)	284
BstV2I	GAAGAC	3 cut(s)	33, 238, 300
BstX2I	RGATCY	1 cut(s)	161
BstXI	CCANNNNNNTGG	1 cut(s)	347
BstYI	RGATCY	1 cut(s)	161
BsuRI	GGCC	1 cut(s)	129
BtsCI	GGATG	1 cut(s)	357
BtsIMutI	CAGTG	1 cut(s)	246
Cac8I	GCNNGC	2 cut(s)	156, 277
CfoI	GCGC	2 cut(s)	110, 250
Cfr10I	RCCGGY	2 cut(s)	318, 342
CseI	GACGC	1 cut(s)	295
CspAI	ACCGGT	1 cut(s)	342
CviAII	CATG	1 cut(s)	80
CviJI	RGCY	7 cut(s)	129, 154, 275, 300, 313, 322, 339
CviKI_1	RGCY	7 cut(s)	129, 154, 275, 300, 313, 322, 339
DdeI	CTNAG	2 cut(s)	150, 238
DinI	GGCGCC	1 cut(s)	109
DpnI	GATC	1 cut(s)	163
DpnII	GATC	1 cut(s)	161
Eco57I	CTGAAG	1 cut(s)	192
Eco91I	GGTNACC	1 cut(s)	53
EcoO65I	GGTNACC	1 cut(s)	53
EgeI	GGCGCC	1 cut(s)	109
EheI	GGCGCC	1 cut(s)	109
Esp3I	CGTCTC	1 cut(s)	174
FaeI	CATG	1 cut(s)	83
FaiI	YATR	2 cut(s)	81, 201
FatI	CATG	1 cut(s)	79
FauI	CCCGC	1 cut(s)	113
FblI	GTMKAC	1 cut(s)	89
FspBI	CTAG	2 cut(s)	159, 276
GlaI	GCGC	2 cut(s)	109, 249
GsuI	CTGGAG	1 cut(s)	82
HaeII	RGCGCY	2 cut(s)	111, 251
HaeIII	GGCC	1 cut(s)	129
HapII	CCGG	3 cut(s)	134, 319, 343
HgaI	GACGC	1 cut(s)	295
HhaI	GCGC	2 cut(s)	110, 250
Hin1I	GRCGYC	2 cut(s)	48, 108
Hin1II	CATG	1 cut(s)	83
Hin6I	GCGC	2 cut(s)	108, 248
HinP1I	GCGC	2 cut(s)	108, 248
HinfI	GANTC	2 cut(s)	60, 148
HpaII	CCGG	3 cut(s)	134, 319, 343
HphI	GGTGA	2 cut(s)	246, 316
Hpy166II	GTNNAC	1 cut(s)	90
Hpy188I	TCNGA	1 cut(s)	186
Hpy8I	GTNNAC	1 cut(s)	90
Hpy99I	CGWCG	3 cut(s)	53, 148, 289
HpyAV	CCTTC	1 cut(s)	140
HpyCH4III	ACNGT	1 cut(s)	87
HpyCH4IV	ACGT	1 cut(s)	48
HpyCH4V	TGCA	2 cut(s)	83, 199
HpyF10VI	GCNNNNNNNGC	3 cut(s)	126, 281, 319
HpyF3I	CTNAG	2 cut(s)	150, 238
HpySE526I	ACGT	1 cut(s)	48
Hsp92I	GRCGYC	2 cut(s)	48, 108
Hsp92II	CATG	1 cut(s)	83
HspAI	GCGC	2 cut(s)	108, 248
KasI	GGCGCC	1 cut(s)	107
Kzo9I	GATC	1 cut(s)	161
LweI	GCATC	3 cut(s)	230, 293, 345
MaeI	CTAG	2 cut(s)	159, 276
MaeII	ACGT	1 cut(s)	48
MaeIII	GTNAC	2 cut(s)	53, 252
MalI	GATC	1 cut(s)	163
MboI	GATC	1 cut(s)	161
MboII	GAAGA	3 cut(s)	38, 243, 305
MflI	RGATCY	1 cut(s)	161
MluCI	AATT	2 cut(s)	187, 361
Mly113I	GGCGCC	1 cut(s)	108
MlyI	GAGTC	1 cut(s)	142
MmeI	TCCRAC	1 cut(s)	311
MnlI	CCTC	3 cut(s)	87, 247, 267
MseI	TTAA	1 cut(s)	364
MspA1I	CMGCKG	1 cut(s)	120
MspI	CCGG	3 cut(s)	134, 319, 343
MvnI	CGCG	1 cut(s)	284
MwoI	GCNNNNNNNGC	3 cut(s)	126, 281, 319
NarI	GGCGCC	1 cut(s)	108
NdeII	GATC	1 cut(s)	161
NheI	GCTAGC	1 cut(s)	275
NlaIII	CATG	1 cut(s)	83
NlaIV	GGNNCC	1 cut(s)	109
NmuCI	GTSAC	1 cut(s)	252
PcsI	WCGNNNNNNNCGW	1 cut(s)	45
PfeI	GAWTC	1 cut(s)	60
PinAI	ACCGGT	1 cut(s)	342
PleI	GAGTC	1 cut(s)	142
PluTI	GGCGCC	1 cut(s)	111
PpsI	GAGTC	1 cut(s)	142
PspEI	GGTNACC	1 cut(s)	53
PspN4I	GGNNCC	1 cut(s)	109
PsuI	RGATCY	1 cut(s)	161
SaqAI	TTAA	1 cut(s)	364
Sau3AI	GATC	1 cut(s)	161
SchI	GAGTC	1 cut(s)	142
SetI	ASST	3 cut(s)	51, 79, 259
SfaNI	GCATC	3 cut(s)	230, 293, 345
SfoI	GGCGCC	1 cut(s)	109
Sse9I	AATT	2 cut(s)	187, 361
SsiI	CCGC	2 cut(s)	120, 282
SspDI	GGCGCC	1 cut(s)	107
SspMI	CTAG	2 cut(s)	159, 276
TaaI	ACNGT	1 cut(s)	87
TaiI	ACGT	1 cut(s)	51
TaqI	TCGA	3 cut(s)	70, 143, 291
TasI	AATT	2 cut(s)	187, 361
TfiI	GAWTC	1 cut(s)	60
Tru1I	TTAA	1 cut(s)	364
Tru9I	TTAA	1 cut(s)	364
TscAI	CASTG	1 cut(s)	246
TseFI	GTSAC	1 cut(s)	252
Tsp45I	GTSAC	1 cut(s)	252
TspDTI	ATGAA	1 cut(s)	39
TspGWI	ACGGA	1 cut(s)	156
TspRI	CASTG	1 cut(s)	246
XapI	RAATTY	1 cut(s)	187
XmiI	GTMKAC	1 cut(s)	89
XspI	CTAG	2 cut(s)	159, 276
ZraI	GACGTC	1 cut(s)	49

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.