MD06G1132800.v1.1

isoform X1

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
Physical Location & Seq
Reverse (-)
27683114 .. 27683518
405 bp
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UTR
Exon/CDS
Intron
MD06G1132800.v1.1.491

Sequence Viewer

Length: 255 bp
ATGTCGCCAGCGCACCCTCAGTTCCGGCTCAATCCGTCAGCCACCGGAATCTCCACCATCAAGCGAAATCAAAACTTCGCCGCTAAAGCCGCCGCTCAACGTATAGCTCAGTCATGGCTTCTCAGTCCATCGGCGATGACGAGGACGACGACGATGATCTCGGTTTCCGATTCGCTCAGCCGCCTCATGCACCGTCTTCTTTGTCCGGAAATGGTTTTACTAACGGCGCAAAGCCTCTTCCGGCGATTTCGGTGA

Protein Analysis

85

Amino Acids

9.42

Weight (kDa)

12.0

Isoelectric Point (pI)

65.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0017575)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 95
AccIII TCCGGA 1 cut(s) 205
AciI CCGC 4 cut(s) 81, 90, 93, 181
AluBI AGCT 1 cut(s) 107
AluI AGCT 1 cut(s) 107
Aor13HI TCCGGA 1 cut(s) 205
AspLEI GCGC 2 cut(s) 13, 229
BbsI GAAGAC 1 cut(s) 188
BccI CCATC 2 cut(s) 65, 136
BceAI ACGGC 1 cut(s) 240
BisI GCNGC 4 cut(s) 81, 90, 93, 181
BlpI GCTNAGC 1 cut(s) 176
BlsI GCNGC 4 cut(s) 82, 91, 94, 182
BpiI GAAGAC 1 cut(s) 188
Bpu1102I GCTNAGC 1 cut(s) 176
BsaWI WCCGGW 2 cut(s) 44, 205
BseAI TCCGGA 1 cut(s) 205
BseMII CTCAG 4 cut(s) 32, 122, 136, 190
BsiSI CCGG 4 cut(s) 25, 45, 206, 241
Bsp13I TCCGGA 1 cut(s) 205
Bsp143I GATC 1 cut(s) 156
Bsp1720I GCTNAGC 1 cut(s) 176
BspACI CCGC 4 cut(s) 81, 90, 93, 181
BspCNI CTCAG 4 cut(s) 31, 121, 135, 189
BspEI TCCGGA 1 cut(s) 205
BsrBI CCGCTC 1 cut(s) 95
BssMI GATC 1 cut(s) 156
Bst4CI ACNGT 1 cut(s) 194
Bst6I CTCTTC 1 cut(s) 242
BstC8I GCNNGC 1 cut(s) 9
BstDEI CTNAG 4 cut(s) 18, 108, 122, 176
BstHHI GCGC 2 cut(s) 13, 229
BstKTI GATC 1 cut(s) 159
BstMBI GATC 1 cut(s) 156
BstMWI GCNNNNNNNGC 2 cut(s) 86, 89
BstV2I GAAGAC 1 cut(s) 188
BtgZI GCGATG 1 cut(s) 149
Cac8I GCNNGC 1 cut(s) 9
CfoI GCGC 2 cut(s) 13, 229
CviAII CATG 2 cut(s) 114, 187
CviJI RGCY 7 cut(s) 28, 41, 89, 107, 118, 180, 234
CviKI_1 RGCY 7 cut(s) 28, 41, 89, 107, 118, 180, 234
DdeI CTNAG 4 cut(s) 18, 108, 122, 176
DpnI GATC 1 cut(s) 158
DpnII GATC 1 cut(s) 156
Eam1104I CTCTTC 1 cut(s) 242
EarI CTCTTC 1 cut(s) 242
FaeI CATG 2 cut(s) 117, 190
FaiI YATR 3 cut(s) 104, 115, 188
FatI CATG 2 cut(s) 113, 186
Fnu4HI GCNGC 4 cut(s) 81, 90, 93, 181
Fsp4HI GCNGC 4 cut(s) 81, 90, 93, 181
GlaI GCGC 2 cut(s) 12, 228
GluI GCNGC 4 cut(s) 81, 90, 93, 181
HapII CCGG 4 cut(s) 25, 45, 206, 241
HhaI GCGC 2 cut(s) 13, 229
Hin1II CATG 2 cut(s) 117, 190
Hin6I GCGC 2 cut(s) 11, 227
HinP1I GCGC 2 cut(s) 11, 227
HinfI GANTC 2 cut(s) 48, 170
HpaII CCGG 4 cut(s) 25, 45, 206, 241
Hpy188I TCNGA 1 cut(s) 169
Hpy188III TCNNGA 1 cut(s) 206
Hpy99I CGWCG 2 cut(s) 151, 154
HpyCH4III ACNGT 1 cut(s) 194
HpyCH4IV ACGT 1 cut(s) 100
HpyCH4V TGCA 1 cut(s) 190
HpyF10VI GCNNNNNNNGC 2 cut(s) 86, 89
HpyF3I CTNAG 4 cut(s) 18, 108, 122, 176
HpySE526I ACGT 1 cut(s) 100
Hsp92II CATG 2 cut(s) 117, 190
HspAI GCGC 2 cut(s) 11, 227
Kpn2I TCCGGA 1 cut(s) 205
Kzo9I GATC 1 cut(s) 156
LpnPI CCDG 4 cut(s) 21, 38, 58, 219
MaeII ACGT 1 cut(s) 100
MalI GATC 1 cut(s) 158
MbiI CCGCTC 1 cut(s) 95
MboI GATC 1 cut(s) 156
MboII GAAGA 2 cut(s) 188, 229
MnlI CCTC 4 cut(s) 27, 135, 194, 245
MroI TCCGGA 1 cut(s) 205
MspI CCGG 4 cut(s) 25, 45, 206, 241
MwoI GCNNNNNNNGC 2 cut(s) 86, 89
NdeII GATC 1 cut(s) 156
NlaIII CATG 2 cut(s) 117, 190
PcsI WCGNNNNNNNCGW 2 cut(s) 137, 146
PfeI GAWTC 2 cut(s) 48, 170
PkrI GCNGC 4 cut(s) 82, 91, 94, 182
SatI GCNGC 4 cut(s) 81, 90, 93, 181
Sau3AI GATC 1 cut(s) 156
SetI ASST 2 cut(s) 103, 109
SgeI CNNG 9 cut(s) 20, 37, 57, 73, 126, 153, 172, 199, 218
SsiI CCGC 4 cut(s) 81, 90, 93, 181
TaaI ACNGT 1 cut(s) 194
TaiI ACGT 1 cut(s) 103
TauI GCSGC 4 cut(s) 83, 92, 95, 183
TfiI GAWTC 2 cut(s) 48, 170
TspGWI ACGGA 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.