Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0017575

Physical Location & Seq

Genomic Coordinates Reverse (-)

30163544 .. 30163962

Gene Structure 419 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008407

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGTCGCCGGCGCATCCTCAGTTGCGGCTCAATCCTTCCGTGACTGGATTCTCCATCGTTAAGCGGAACCAGAACCTCATGGTGTGGCAGGTCATGGCGTCACAGACGACGGTTGATGAGGACGATGATCTCGGGTTTCGATTCCCTGGCCAACCACCTCATGCGGCGTCTTCTTACTCCAGCAATAGCGCCAATAACGACGGCAGTGGTCTTTCGGCGTTTTCCATGACTCGACCTACTAGATCTCCGTCTCCGGCGAGCATTTGTTCAATTCTGGTGTTTATGTTGAGATCTGAAGAATTGATACTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0007049 GO:0008150 GO:0009825 GO:0009987 GO:0016020 GO:0016049 GO:0022402 GO:0030135 GO:0030136 GO:0031410 GO:0031982 GO:0032506 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0051301 GO:0061640 GO:0071944 GO:0097708 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

104

Amino Acids

11.2

Weight (kDa)

6.02

Isoelectric Point (pI)

70.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0017575)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g14570 FvH4_3g24840
malus_domestica	MD06G1132800.v1.1
rosa_laevigata	RLG00000008407 RLG00000016476 RLG00000022590
rosa_multiflora	Rmu_sc0003990.1_g000002
rosa_samantha	Rh1CG261300 Rh4CG007400 Rh4CG180700 Rh5AG034800 Rh5CG037200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	79
AciI	CCGC	3 cut(s)	25, 64, 164
AcoI	YGGCCR	1 cut(s)	148
AcyI	GRCGYC	2 cut(s)	98, 167
AgsI	TTSAA	1 cut(s)	270
AjnI	CCWGG	1 cut(s)	145
Alw26I	GTCTC	1 cut(s)	255
Ama87I	CYCGRG	1 cut(s)	131
AoxI	GGCC	1 cut(s)	148
AspLEI	GCGC	2 cut(s)	13, 191
AvaI	CYCGRG	1 cut(s)	131
BalI	TGGCCA	1 cut(s)	150
BarI	GAAGNNNNNNTAC	1 cut(s)	288
BbsI	GAAGAC	1 cut(s)	162
BccI	CCATC	1 cut(s)	62
BceAI	ACGGC	1 cut(s)	217
BciT130I	CCWGG	1 cut(s)	147
BcoDI	GTCTC	1 cut(s)	255
BfaI	CTAG	1 cut(s)	240
BfoI	RGCGCY	1 cut(s)	192
BfuAI	ACCTGC	1 cut(s)	79
BglII	AGATCT	2 cut(s)	242, 290
BisI	GCNGC	2 cut(s)	26, 165
BlsI	GCNGC	2 cut(s)	27, 166
Bme1390I	CCNGG	1 cut(s)	147
BmeT110I	CYCGRG	1 cut(s)	131
BmiI	GGNNCC	1 cut(s)	68
BmrFI	CCNGG	1 cut(s)	147
BmsI	GCATC	1 cut(s)	22
BpiI	GAAGAC	1 cut(s)	162
BpmI	CTGGAG	1 cut(s)	163
BsaHI	GRCGYC	2 cut(s)	98, 167
BsaJI	CCNNGG	1 cut(s)	145
BsaXI	ACNNNNNCTCC	2 cut(s)	229, 259
Bse118I	RCCGGY	1 cut(s)	7
Bse1I	ACTGG	1 cut(s)	49
BseBI	CCWGG	1 cut(s)	147
BseDI	CCNNGG	1 cut(s)	145
BseGI	GGATG	1 cut(s)	13
BseMII	CTCAG	1 cut(s)	32
BseNI	ACTGG	1 cut(s)	49
BshFI	GGCC	1 cut(s)	150
BsiHKCI	CYCGRG	1 cut(s)	131
BsiSI	CCGG	2 cut(s)	8, 254
BsmAI	GTCTC	1 cut(s)	255
BsmBI	CGTCTC	1 cut(s)	255
BsnI	GGCC	1 cut(s)	150
BsoBI	CYCGRG	1 cut(s)	131
Bsp143I	GATC	3 cut(s)	127, 242, 290
BspACI	CCGC	3 cut(s)	25, 64, 164
BspANI	GGCC	1 cut(s)	150
BspCNI	CTCAG	1 cut(s)	31
BspLI	GGNNCC	1 cut(s)	68
BspMI	ACCTGC	1 cut(s)	79
BsrFI	RCCGGY	1 cut(s)	7
BsrI	ACTGG	1 cut(s)	49
BssAI	RCCGGY	1 cut(s)	7
BssECI	CCNNGG	1 cut(s)	145
BssMI	GATC	3 cut(s)	127, 242, 290
BssNI	GRCGYC	2 cut(s)	98, 167
Bst2UI	CCWGG	1 cut(s)	147
Bst4CI	ACNGT	2 cut(s)	112, 309
BstACI	GRCGYC	2 cut(s)	98, 167
BstC8I	GCNNGC	2 cut(s)	9, 259
BstDEI	CTNAG	1 cut(s)	18
BstF5I	GGATG	1 cut(s)	13
BstH2I	RGCGCY	1 cut(s)	192
BstHHI	GCGC	2 cut(s)	13, 191
BstKTI	GATC	3 cut(s)	130, 245, 293
BstMAI	GTCTC	1 cut(s)	255
BstMBI	GATC	3 cut(s)	127, 242, 290
BstNI	CCWGG	1 cut(s)	147
BstSCI	CCNGG	1 cut(s)	145
BstV2I	GAAGAC	1 cut(s)	162
BstX2I	RGATCY	2 cut(s)	242, 290
BstYI	RGATCY	2 cut(s)	242, 290
BsuRI	GGCC	1 cut(s)	150
BtsCI	GGATG	1 cut(s)	13
BtsI	GCAGTG	1 cut(s)	211
BtsIMutI	CAGTG	1 cut(s)	211
BveI	ACCTGC	1 cut(s)	79
Cac8I	GCNNGC	2 cut(s)	9, 259
CfoI	GCGC	2 cut(s)	13, 191
Cfr10I	RCCGGY	1 cut(s)	7
CseI	GACGC	2 cut(s)	87, 156
CviAII	CATG	4 cut(s)	79, 94, 161, 226
CviJI	RGCY	2 cut(s)	28, 150
CviKI_1	RGCY	2 cut(s)	28, 150
DdeI	CTNAG	1 cut(s)	18
DpnI	GATC	3 cut(s)	129, 244, 292
DpnII	GATC	3 cut(s)	127, 242, 290
EaeI	YGGCCR	1 cut(s)	148
Eco88I	CYCGRG	1 cut(s)	131
EcoRII	CCWGG	1 cut(s)	145
Esp3I	CGTCTC	1 cut(s)	255
FaeI	CATG	4 cut(s)	82, 97, 164, 229
FaiI	YATR	5 cut(s)	80, 95, 162, 227, 284
FatI	CATG	4 cut(s)	78, 93, 160, 225
Fnu4HI	GCNGC	2 cut(s)	26, 165
Fsp4HI	GCNGC	2 cut(s)	26, 165
FspBI	CTAG	1 cut(s)	240
GlaI	GCGC	2 cut(s)	12, 190
GluI	GCNGC	2 cut(s)	26, 165
GsuI	CTGGAG	1 cut(s)	163
HaeII	RGCGCY	1 cut(s)	192
HaeIII	GGCC	1 cut(s)	150
HapII	CCGG	2 cut(s)	8, 254
HgaI	GACGC	2 cut(s)	87, 156
HhaI	GCGC	2 cut(s)	13, 191
Hin1I	GRCGYC	2 cut(s)	98, 167
Hin1II	CATG	4 cut(s)	82, 97, 164, 229
Hin6I	GCGC	2 cut(s)	11, 189
HinP1I	GCGC	2 cut(s)	11, 189
HinfI	GANTC	3 cut(s)	48, 141, 229
HpaII	CCGG	2 cut(s)	8, 254
Hpy188I	TCNGA	1 cut(s)	295
Hpy99I	CGWCG	2 cut(s)	112, 203
HpyAV	CCTTC	1 cut(s)	45
HpyCH4III	ACNGT	2 cut(s)	112, 309
HpyF3I	CTNAG	1 cut(s)	18
Hsp92I	GRCGYC	2 cut(s)	98, 167
Hsp92II	CATG	4 cut(s)	82, 97, 164, 229
HspAI	GCGC	2 cut(s)	11, 189
KroI	GCCGGC	1 cut(s)	7
KroNI	GCCGGC	1 cut(s)	9
Kzo9I	GATC	3 cut(s)	127, 242, 290
LpnPI	CCDG	9 cut(s)	21, 30, 74, 83, 132, 159, 193, 260, 267
LweI	GCATC	1 cut(s)	22
MaeI	CTAG	1 cut(s)	240
MaeIII	GTNAC	2 cut(s)	40, 99
MalI	GATC	3 cut(s)	129, 244, 292
MboI	GATC	3 cut(s)	127, 242, 290
MboII	GAAGA	2 cut(s)	162, 308
MflI	RGATCY	2 cut(s)	242, 290
MlsI	TGGCCA	1 cut(s)	150
MluCI	AATT	2 cut(s)	270, 299
MluNI	TGGCCA	1 cut(s)	150
MlyI	GAGTC	1 cut(s)	223
MnlI	CCTC	4 cut(s)	27, 86, 112, 168
Mox20I	TGGCCA	1 cut(s)	150
MreI	CGCCGGCG	1 cut(s)	7
MroNI	GCCGGC	1 cut(s)	7
MscI	TGGCCA	1 cut(s)	150
MseI	TTAA	1 cut(s)	60
Msp20I	TGGCCA	1 cut(s)	150
MspI	CCGG	2 cut(s)	8, 254
MspR9I	CCNGG	1 cut(s)	147
MvaI	CCWGG	1 cut(s)	147
NaeI	GCCGGC	1 cut(s)	9
NdeII	GATC	3 cut(s)	127, 242, 290
NgoMIV	GCCGGC	1 cut(s)	7
NlaIII	CATG	4 cut(s)	82, 97, 164, 229
NlaIV	GGNNCC	1 cut(s)	68
NmuCI	GTSAC	2 cut(s)	40, 99
PdiI	GCCGGC	1 cut(s)	9
PfeI	GAWTC	2 cut(s)	48, 141
PkrI	GCNGC	2 cut(s)	27, 166
PleI	GAGTC	1 cut(s)	223
PpsI	GAGTC	1 cut(s)	223
Psp6I	CCWGG	1 cut(s)	145
PspGI	CCWGG	1 cut(s)	145
PspN4I	GGNNCC	1 cut(s)	68
PsuI	RGATCY	2 cut(s)	242, 290
SaqAI	TTAA	1 cut(s)	60
SatI	GCNGC	2 cut(s)	26, 165
Sau3AI	GATC	3 cut(s)	127, 242, 290
SchI	GAGTC	1 cut(s)	223
ScrFI	CCNGG	1 cut(s)	147
SetI	ASST	4 cut(s)	78, 93, 160, 238
SfaNI	GCATC	1 cut(s)	22
SgrAI	CRCCGGYG	1 cut(s)	7
Sse9I	AATT	2 cut(s)	270, 299
SsiI	CCGC	3 cut(s)	25, 64, 164
SspMI	CTAG	1 cut(s)	240
StyD4I	CCNGG	1 cut(s)	145
TaaI	ACNGT	2 cut(s)	112, 309
TaqI	TCGA	2 cut(s)	139, 232
TasI	AATT	2 cut(s)	270, 299
TauI	GCSGC	2 cut(s)	28, 167
TfiI	GAWTC	2 cut(s)	48, 141
Tru1I	TTAA	1 cut(s)	60
Tru9I	TTAA	1 cut(s)	60
TscAI	CASTG	1 cut(s)	211
TseFI	GTSAC	2 cut(s)	40, 99
Tsp45I	GTSAC	2 cut(s)	40, 99
TspGWI	ACGGA	2 cut(s)	28, 237
TspRI	CASTG	1 cut(s)	211
XspI	CTAG	1 cut(s)	240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.