Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003990.1

Orthogroup ID

OG0017575

Physical Location & Seq

Genomic Coordinates Forward (+)

6834 .. 7337

Gene Structure 504 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003990.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

atggactgcagtttccgagctcgaactgtcttcttctcaaccttgggtctcaaacctgaacgaaatcatatctggaccatcacagactcctcactatacttgtctagtttccgcttagaagacaaacgcgccgccgtggtcaccggaggcttctcttcaatttcgtttctccatttgattccgctatcgacaccgacagaggcttctcctcactcgattcgatgttgcaatcaattggaaaaagcggcgaaagaggtgcagggattgaacccttccgacatgaacaagcagcgactcgagataaagcagctcatggaggagctcaaaacatcgtccgccgaagatgaggagattgctgcacatttacaggtgggcccgacccgctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Fes1

Protein Analysis

128

Amino Acids

14.34

Weight (kDa)

6.41

Isoelectric Point (pI)

43.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017575)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g14570 FvH4_3g24840
malus_domestica	MD06G1132800.v1.1
rosa_laevigata	RLG00000008407 RLG00000016476 RLG00000022590
rosa_multiflora	Rmu_sc0003990.1_g000002
rosa_samantha	Rh1CG261300 Rh4CG007400 Rh4CG180700 Rh5AG034800 Rh5CG037200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	129
AciI	CCGC	6 cut(s)	112, 132, 182, 245, 336, 382
AgsI	TTSAA	2 cut(s)	159, 268
AluBI	AGCT	3 cut(s)	20, 310, 322
AluI	AGCT	3 cut(s)	20, 310, 322
Alw21I	GWGCWC	2 cut(s)	22, 324
Alw26I	GTCTC	1 cut(s)	53
Ama87I	CYCGRG	1 cut(s)	296
AoxI	GGCC	1 cut(s)	373
ApaI	GGGCCC	1 cut(s)	377
ApeKI	GCWGC	3 cut(s)	289, 307, 356
AspLEI	GCGC	1 cut(s)	131
AspS9I	GGNCC	3 cut(s)	75, 373, 374
AsuHPI	GGTGA	1 cut(s)	133
AvaI	CYCGRG	1 cut(s)	296
AvaII	GGWCC	1 cut(s)	75
BaeGI	GKGCMC	1 cut(s)	377
BanII	GRGCYC	3 cut(s)	22, 324, 377
BbsI	GAAGAC	2 cut(s)	22, 126
Bbv12I	GWGCWC	2 cut(s)	22, 324
BbvI	GCAGC	3 cut(s)	301, 319, 343
BccI	CCATC	1 cut(s)	86
BceAI	ACGGC	1 cut(s)	119
BcgI	CGANNNNNNTGC	2 cut(s)	238, 272
BcoDI	GTCTC	1 cut(s)	53
BfaI	CTAG	1 cut(s)	105
BfmI	CTRYAG	1 cut(s)	7
BisI	GCNGC	5 cut(s)	132, 246, 290, 308, 357
BlsI	GCNGC	5 cut(s)	133, 247, 291, 309, 358
Bme18I	GGWCC	1 cut(s)	75
BmeT110I	CYCGRG	1 cut(s)	296
BmgT120I	GGNCC	3 cut(s)	75, 373, 374
BmiI	GGNNCC	1 cut(s)	375
BpiI	GAAGAC	2 cut(s)	22, 126
BsaI	GGTCTC	1 cut(s)	53
BsaJI	CCNNGG	2 cut(s)	42, 135
BsaWI	WCCGGW	1 cut(s)	143
BseDI	CCNNGG	2 cut(s)	42, 135
BseRI	GAGGAG	4 cut(s)	79, 198, 332, 362
BseSI	GKGCMC	1 cut(s)	377
BseXI	GCAGC	3 cut(s)	301, 319, 343
BsgI	GTGCAG	2 cut(s)	278, 342
Bsh1236I	CGCG	1 cut(s)	129
BshFI	GGCC	1 cut(s)	375
BsiHKAI	GWGCWC	2 cut(s)	22, 324
BsiHKCI	CYCGRG	1 cut(s)	296
BsiSI	CCGG	1 cut(s)	144
BsmAI	GTCTC	1 cut(s)	53
BsnI	GGCC	1 cut(s)	375
Bso31I	GGTCTC	1 cut(s)	53
BsoBI	CYCGRG	1 cut(s)	296
Bsp120I	GGGCCC	1 cut(s)	373
Bsp1286I	GDGCHC	3 cut(s)	22, 324, 377
BspACI	CCGC	6 cut(s)	112, 132, 182, 245, 336, 382
BspANI	GGCC	1 cut(s)	375
BspFNI	CGCG	1 cut(s)	129
BspLI	GGNNCC	1 cut(s)	375
BspMAI	CTGCAG	1 cut(s)	11
BspTNI	GGTCTC	1 cut(s)	53
BssECI	CCNNGG	2 cut(s)	42, 135
BssT1I	CCWWGG	1 cut(s)	42
Bst4CI	ACNGT	1 cut(s)	28
Bst6I	CTCTTC	1 cut(s)	160
BstDEI	CTNAG	1 cut(s)	115
BstDSI	CCRYGG	1 cut(s)	135
BstEII	GGTNACC	1 cut(s)	139
BstFNI	CGCG	1 cut(s)	129
BstHHI	GCGC	1 cut(s)	131
BstMAI	GTCTC	1 cut(s)	53
BstMWI	GCNNNNNNNGC	1 cut(s)	381
BstPI	GGTNACC	1 cut(s)	139
BstSFI	CTRYAG	1 cut(s)	7
BstSLI	GKGCMC	1 cut(s)	377
BstUI	CGCG	1 cut(s)	129
BstV1I	GCAGC	3 cut(s)	301, 319, 343
BstV2I	GAAGAC	2 cut(s)	22, 126
BsuRI	GGCC	1 cut(s)	375
BtgI	CCRYGG	1 cut(s)	135
CfoI	GCGC	1 cut(s)	131
Cfr13I	GGNCC	3 cut(s)	75, 373, 374
CviAII	CATG	2 cut(s)	280, 313
CviJI	RGCY	6 cut(s)	20, 150, 203, 310, 322, 375
CviKI_1	RGCY	6 cut(s)	20, 150, 203, 310, 322, 375
DdeI	CTNAG	1 cut(s)	115
Eam1104I	CTCTTC	1 cut(s)	160
EarI	CTCTTC	1 cut(s)	160
EciI	GGCGGA	1 cut(s)	325
Ecl136II	GAGCTC	2 cut(s)	20, 322
Eco130I	CCWWGG	1 cut(s)	42
Eco24I	GRGCYC	3 cut(s)	22, 324, 377
Eco31I	GGTCTC	1 cut(s)	53
Eco47I	GGWCC	1 cut(s)	75
Eco53kI	GAGCTC	2 cut(s)	20, 322
Eco88I	CYCGRG	1 cut(s)	296
Eco91I	GGTNACC	1 cut(s)	139
EcoICRI	GAGCTC	2 cut(s)	20, 322
EcoO65I	GGTNACC	1 cut(s)	139
EcoT14I	CCWWGG	1 cut(s)	42
EcoT38I	GRGCYC	3 cut(s)	22, 324, 377
ErhI	CCWWGG	1 cut(s)	42
FaeI	CATG	2 cut(s)	283, 316
FaiI	YATR	4 cut(s)	69, 97, 281, 314
FatI	CATG	2 cut(s)	279, 312
Fnu4HI	GCNGC	5 cut(s)	132, 246, 290, 308, 357
FriOI	GRGCYC	3 cut(s)	22, 324, 377
Fsp4HI	GCNGC	5 cut(s)	132, 246, 290, 308, 357
FspBI	CTAG	1 cut(s)	105
GlaI	GCGC	1 cut(s)	130
GluI	GCNGC	5 cut(s)	132, 246, 290, 308, 357
HaeIII	GGCC	1 cut(s)	375
HapII	CCGG	1 cut(s)	144
HhaI	GCGC	1 cut(s)	131
Hin1II	CATG	2 cut(s)	283, 316
Hin6I	GCGC	1 cut(s)	129
HinP1I	GCGC	1 cut(s)	129
HinfI	GANTC	4 cut(s)	86, 178, 217, 294
HpaII	CCGG	1 cut(s)	144
HphI	GGTGA	1 cut(s)	133
Hpy188I	TCNGA	2 cut(s)	17, 277
Hpy188III	TCNNGA	2 cut(s)	73, 298
HpyAV	CCTTC	1 cut(s)	282
HpyCH4III	ACNGT	1 cut(s)	28
HpyCH4V	TGCA	4 cut(s)	9, 228, 259, 359
HpyF10VI	GCNNNNNNNGC	1 cut(s)	381
HpyF3I	CTNAG	1 cut(s)	115
Hsp92II	CATG	2 cut(s)	283, 316
HspAI	GCGC	1 cut(s)	129
LmnI	GCTCC	1 cut(s)	319
LpnPI	CCDG	5 cut(s)	58, 69, 157, 245, 353
Lsp1109I	GCAGC	3 cut(s)	301, 319, 343
MaeI	CTAG	1 cut(s)	105
MaeIII	GTNAC	1 cut(s)	139
MboII	GAAGA	5 cut(s)	22, 25, 131, 147, 353
MfeI	CAATTG	1 cut(s)	233
MhlI	GDGCHC	3 cut(s)	22, 324, 377
MluCI	AATT	2 cut(s)	159, 233
MlyI	GAGTC	2 cut(s)	80, 288
MmeI	TCCRAC	1 cut(s)	300
MnlI	CCTC	7 cut(s)	100, 140, 193, 219, 247, 310, 340
MspI	CCGG	1 cut(s)	144
MunI	CAATTG	1 cut(s)	233
MvnI	CGCG	1 cut(s)	129
MwoI	GCNNNNNNNGC	1 cut(s)	381
NlaIII	CATG	2 cut(s)	283, 316
NlaIV	GGNNCC	1 cut(s)	375
NmuCI	GTSAC	1 cut(s)	139
PaeR7I	CTCGAG	1 cut(s)	296
PfeI	GAWTC	2 cut(s)	178, 217
PkrI	GCNGC	5 cut(s)	133, 247, 291, 309, 358
PleI	GAGTC	2 cut(s)	80, 288
PpsI	GAGTC	2 cut(s)	80, 288
Psp124BI	GAGCTC	2 cut(s)	22, 324
PspEI	GGTNACC	1 cut(s)	139
PspN4I	GGNNCC	1 cut(s)	375
PspOMI	GGGCCC	1 cut(s)	373
PspPI	GGNCC	3 cut(s)	75, 373, 374
PstI	CTGCAG	1 cut(s)	11
SacI	GAGCTC	2 cut(s)	22, 324
SatI	GCNGC	5 cut(s)	132, 246, 290, 308, 357
Sau96I	GGNCC	3 cut(s)	75, 373, 374
SchI	GAGTC	2 cut(s)	80, 288
SduI	GDGCHC	3 cut(s)	22, 324, 377
SetI	ASST	7 cut(s)	22, 44, 58, 258, 312, 324, 372
SfcI	CTRYAG	1 cut(s)	7
Sfr274I	CTCGAG	1 cut(s)	296
SinI	GGWCC	1 cut(s)	75
SlaI	CTCGAG	1 cut(s)	296
SmlI	CTYRAG	1 cut(s)	296
SmoI	CTYRAG	1 cut(s)	296
Sse9I	AATT	2 cut(s)	159, 233
SsiI	CCGC	6 cut(s)	112, 132, 182, 245, 336, 382
SspMI	CTAG	1 cut(s)	105
SstI	GAGCTC	2 cut(s)	22, 324
StyI	CCWWGG	1 cut(s)	42
TaaI	ACNGT	1 cut(s)	28
TaqI	TCGA	5 cut(s)	22, 188, 215, 220, 297
TasI	AATT	2 cut(s)	159, 233
TauI	GCSGC	2 cut(s)	134, 248
TfiI	GAWTC	2 cut(s)	178, 217
TseFI	GTSAC	1 cut(s)	139
TseI	GCWGC	3 cut(s)	289, 307, 356
Tsp45I	GTSAC	1 cut(s)	139
TspDTI	ATGAA	1 cut(s)	296
VpaK11BI	GGWCC	1 cut(s)	75
XhoI	CTCGAG	1 cut(s)	296
XspI	CTAG	1 cut(s)	105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.