Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0017575

Physical Location & Seq

Genomic Coordinates Reverse (-)

1396976 .. 1397299

Gene Structure 324 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG007400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGTACTCGCGCCAGTGGAGCGGAGGTTCGAGCAGCCCGGGCTCATCTCCGGCGATGTCGTCGGCGCATCCTCCGTCATGGCTCAATCCTTCCGCGACTGGATTCTCCACCGTCAAGAGGAACCAGAACCTCACCGCCAAAGCCACCGCGCAGCGGCTTGCGCAAGTCATGGCGTCGCAGACGACGATCTCTGATTCCGATTCCCTAGCCAGCCGCCTCATGTGCCGTCTTCCCCTCGATTCCTCTTCTCTGCTCGATTTCGTTGTCGACGCCGACTTCAATGCCAATGAAGGCTTCTCCTCGCTCGATTCGATGTTGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0007049 GO:0008150 GO:0009825 GO:0009987 GO:0016020 GO:0016049 GO:0022402 GO:0030135 GO:0030136 GO:0031410 GO:0031982 GO:0032506 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0051301 GO:0061640 GO:0071944 GO:0097708 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

107

Amino Acids

11.36

Weight (kDa)

5.54

Isoelectric Point (pI)

63.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017575)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g14570 FvH4_3g24840
malus_domestica	MD06G1132800.v1.1
rosa_laevigata	RLG00000008407 RLG00000016476 RLG00000022590
rosa_multiflora	Rmu_sc0003990.1_g000002
rosa_samantha	Rh1CG261300 Rh4CG007400 Rh4CG180700 Rh5AG034800 Rh5CG037200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	162
AccBSI	CCGCTC	1 cut(s)	21
AccI	GTMKAC	1 cut(s)	267
AccII	CGCG	3 cut(s)	10, 95, 149
AciI	CCGC	6 cut(s)	21, 93, 135, 147, 154, 214
AcyI	GRCGYC	2 cut(s)	173, 270
AfaI	GTAC	1 cut(s)	5
AfiI	CCNNNNNNNGG	2 cut(s)	117, 153
AgsI	TTSAA	1 cut(s)	280
AjuI	GAANNNNNNNTTGG	2 cut(s)	278, 310
AloI	GAACNNNNNNTCC	2 cut(s)	10, 42
Ama87I	CYCGRG	1 cut(s)	37
ApeKI	GCWGC	2 cut(s)	33, 151
AspLEI	GCGC	4 cut(s)	12, 67, 151, 163
AsuC2I	CCSGG	2 cut(s)	38, 39
AsuHPI	GGTGA	1 cut(s)	124
AvaI	CYCGRG	1 cut(s)	37
BanII	GRGCYC	1 cut(s)	44
BbsI	GAAGAC	1 cut(s)	221
BbvI	GCAGC	2 cut(s)	45, 163
BceAI	ACGGC	1 cut(s)	210
BcgI	CGANNNNNNTGC	2 cut(s)	263, 297
BcnI	CCSGG	2 cut(s)	38, 39
BfaI	CTAG	1 cut(s)	206
BisI	GCNGC	4 cut(s)	34, 152, 155, 214
BlsI	GCNGC	4 cut(s)	35, 153, 156, 215
Bme1390I	CCNGG	2 cut(s)	38, 39
BmeT110I	CYCGRG	1 cut(s)	37
BmiI	GGNNCC	1 cut(s)	122
BmrFI	CCNGG	2 cut(s)	38, 39
BmsI	GCATC	1 cut(s)	76
BpiI	GAAGAC	1 cut(s)	221
BpuMI	CCSGG	2 cut(s)	38, 39
BsaHI	GRCGYC	2 cut(s)	173, 270
BsaJI	CCNNGG	1 cut(s)	37
BsaXI	ACNNNNNCTCC	2 cut(s)	10, 40
Bsc4I	CCNNNNNNNGG	2 cut(s)	117, 153
Bse1I	ACTGG	2 cut(s)	13, 103
BseDI	CCNNGG	1 cut(s)	37
BseGI	GGATG	1 cut(s)	67
BseLI	CCNNNNNNNGG	2 cut(s)	117, 153
BseNI	ACTGG	2 cut(s)	13, 103
BseRI	GAGGAG	1 cut(s)	289
BseXI	GCAGC	2 cut(s)	45, 163
Bsh1236I	CGCG	3 cut(s)	10, 95, 149
BsiHKCI	CYCGRG	1 cut(s)	37
BsiSI	CCGG	2 cut(s)	38, 50
BslI	CCNNNNNNNGG	2 cut(s)	117, 153
BsoBI	CYCGRG	1 cut(s)	37
Bsp1286I	GDGCHC	1 cut(s)	44
Bsp143I	GATC	1 cut(s)	186
BspACI	CCGC	6 cut(s)	21, 93, 135, 147, 154, 214
BspFNI	CGCG	3 cut(s)	10, 95, 149
BspLI	GGNNCC	1 cut(s)	122
BsrBI	CCGCTC	1 cut(s)	21
BsrI	ACTGG	2 cut(s)	13, 103
BssECI	CCNNGG	1 cut(s)	37
BssMI	GATC	1 cut(s)	186
BssNI	GRCGYC	2 cut(s)	173, 270
Bst4CI	ACNGT	1 cut(s)	112
Bst6I	CTCTTC	1 cut(s)	250
BstACI	GRCGYC	2 cut(s)	173, 270
BstC8I	GCNNGC	2 cut(s)	159, 211
BstF5I	GGATG	1 cut(s)	67
BstFNI	CGCG	3 cut(s)	10, 95, 149
BstHHI	GCGC	4 cut(s)	12, 67, 151, 163
BstKTI	GATC	1 cut(s)	189
BstMBI	GATC	1 cut(s)	186
BstMWI	GCNNNNNNNGC	4 cut(s)	18, 39, 160, 222
BstSCI	CCNGG	2 cut(s)	36, 37
BstUI	CGCG	3 cut(s)	10, 95, 149
BstV1I	GCAGC	2 cut(s)	45, 163
BstV2I	GAAGAC	1 cut(s)	221
BtgZI	GCGATG	1 cut(s)	68
BtsCI	GGATG	1 cut(s)	67
BtsIMutI	CAGTG	1 cut(s)	20
Cac8I	GCNNGC	2 cut(s)	159, 211
CfoI	GCGC	4 cut(s)	12, 67, 151, 163
Cfr9I	CCCGGG	1 cut(s)	37
CseI	GACGC	2 cut(s)	162, 278
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	3 cut(s)	78, 169, 220
CviJI	RGCY	8 cut(s)	36, 42, 82, 143, 157, 209, 213, 294
CviKI_1	RGCY	8 cut(s)	36, 42, 82, 143, 157, 209, 213, 294
CviQI	GTAC	1 cut(s)	4
DpnI	GATC	1 cut(s)	188
DpnII	GATC	1 cut(s)	186
Eam1104I	CTCTTC	1 cut(s)	250
EarI	CTCTTC	1 cut(s)	250
Eco24I	GRGCYC	1 cut(s)	44
Eco88I	CYCGRG	1 cut(s)	37
EcoT38I	GRGCYC	1 cut(s)	44
FaeI	CATG	3 cut(s)	81, 172, 223
FaiI	YATR	3 cut(s)	79, 170, 221
FatI	CATG	3 cut(s)	77, 168, 219
FblI	GTMKAC	1 cut(s)	267
Fnu4HI	GCNGC	4 cut(s)	34, 152, 155, 214
FokI	GGATG	1 cut(s)	54
FriOI	GRGCYC	1 cut(s)	44
Fsp4HI	GCNGC	4 cut(s)	34, 152, 155, 214
FspBI	CTAG	1 cut(s)	206
FspI	TGCGCA	1 cut(s)	162
GlaI	GCGC	4 cut(s)	11, 66, 150, 162
GluI	GCNGC	4 cut(s)	34, 152, 155, 214
HapII	CCGG	2 cut(s)	38, 50
HgaI	GACGC	2 cut(s)	162, 278
HhaI	GCGC	4 cut(s)	12, 67, 151, 163
Hin1I	GRCGYC	2 cut(s)	173, 270
Hin1II	CATG	3 cut(s)	81, 172, 223
Hin6I	GCGC	4 cut(s)	10, 65, 149, 161
HinP1I	GCGC	4 cut(s)	10, 65, 149, 161
HincII	GTYRAC	1 cut(s)	268
HindII	GTYRAC	1 cut(s)	268
HinfI	GANTC	5 cut(s)	102, 194, 200, 239, 308
HpaII	CCGG	2 cut(s)	38, 50
HphI	GGTGA	1 cut(s)	124
Hpy166II	GTNNAC	1 cut(s)	268
Hpy188I	TCNGA	2 cut(s)	193, 199
Hpy188III	TCNNGA	1 cut(s)	115
Hpy8I	GTNNAC	1 cut(s)	268
Hpy99I	CGWCG	4 cut(s)	64, 178, 187, 272
HpyAV	CCTTC	2 cut(s)	99, 284
HpyCH4III	ACNGT	1 cut(s)	112
HpyCH4V	TGCA	1 cut(s)	319
HpyF10VI	GCNNNNNNNGC	4 cut(s)	18, 39, 160, 222
Hsp92I	GRCGYC	2 cut(s)	173, 270
Hsp92II	CATG	3 cut(s)	81, 172, 223
HspAI	GCGC	4 cut(s)	10, 65, 149, 161
Kzo9I	GATC	1 cut(s)	186
LmnI	GCTCC	1 cut(s)	18
LpnPI	CCDG	6 cut(s)	26, 51, 63, 84, 137, 223
Lsp1109I	GCAGC	2 cut(s)	45, 163
LweI	GCATC	1 cut(s)	76
MaeI	CTAG	1 cut(s)	206
MalI	GATC	1 cut(s)	188
MbiI	CCGCTC	1 cut(s)	21
MboI	GATC	1 cut(s)	186
MboII	GAAGA	2 cut(s)	221, 237
MhlI	GDGCHC	1 cut(s)	44
MnlI	CCTC	8 cut(s)	17, 81, 111, 140, 227, 245, 253, 310
MspA1I	CMGCKG	1 cut(s)	154
MspI	CCGG	2 cut(s)	38, 50
MspR9I	CCNGG	2 cut(s)	38, 39
MvnI	CGCG	3 cut(s)	10, 95, 149
MwoI	GCNNNNNNNGC	4 cut(s)	18, 39, 160, 222
NciI	CCSGG	2 cut(s)	38, 39
NdeII	GATC	1 cut(s)	186
NlaIII	CATG	3 cut(s)	81, 172, 223
NlaIV	GGNNCC	1 cut(s)	122
NsbI	TGCGCA	1 cut(s)	162
PcsI	WCGNNNNNNNCGW	2 cut(s)	182, 308
PfeI	GAWTC	5 cut(s)	102, 194, 200, 239, 308
PkrI	GCNGC	4 cut(s)	35, 153, 156, 215
PspN4I	GGNNCC	1 cut(s)	122
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
SalI	GTCGAC	1 cut(s)	266
SatI	GCNGC	4 cut(s)	34, 152, 155, 214
Sau3AI	GATC	1 cut(s)	186
ScrFI	CCNGG	2 cut(s)	38, 39
SduI	GDGCHC	1 cut(s)	44
SetI	ASST	2 cut(s)	28, 132
SfaNI	GCATC	1 cut(s)	76
SmaI	CCCGGG	1 cut(s)	39
SrfI	GCCCGGGC	1 cut(s)	39
SsiI	CCGC	6 cut(s)	21, 93, 135, 147, 154, 214
SspMI	CTAG	1 cut(s)	206
StyD4I	CCNGG	2 cut(s)	36, 37
TaaI	ACNGT	1 cut(s)	112
TaqI	TCGA	6 cut(s)	29, 237, 255, 267, 306, 311
TatI	WGTACW	1 cut(s)	3
TauI	GCSGC	2 cut(s)	157, 216
TfiI	GAWTC	5 cut(s)	102, 194, 200, 239, 308
TscAI	CASTG	1 cut(s)	20
TseI	GCWGC	2 cut(s)	33, 151
TspDTI	ATGAA	1 cut(s)	303
TspGWI	ACGGA	1 cut(s)	63
TspMI	CCCGGG	1 cut(s)	37
TspRI	CASTG	1 cut(s)	20
XmaI	CCCGGG	1 cut(s)	37
XmiI	GTMKAC	1 cut(s)	267
XspI	CTAG	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.