Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0017575

Physical Location & Seq

Genomic Coordinates Forward (+)

52602040 .. 52605927

Gene Structure 3888 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG261300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGTCGCCGGCGTATCCTCAGTCGCGGCTCAATCCTTCCGTGACTGGATTCTCCACCGTCAAGTGGAACCAGAACGTGATGGCGTCGCAGGTCATGGCGTCGCAGACGACGGTTGATGACGACTATGAGGACGATGATCTCGGGTTCCGATTCCCTGGCCAGCCGCCTCATGCGCCGTCTTCTTACTCCAGCAATAGCGCCAATAACTGCGGCAGTGGTCTTCCGGCGTTTTCCACGACTCGAACTATTAGATCTCCGTCTCCGGCGCGTGAGGGAGATTTGGATTGTTCGAGTTCAAGACTGGAGTTTGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0007049 GO:0008150 GO:0009825 GO:0009987 GO:0016020 GO:0016049 GO:0022402 GO:0030135 GO:0030136 GO:0031410 GO:0031982 GO:0032506 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0051301 GO:0061640 GO:0071944 GO:0097708 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

104

Amino Acids

11.18

Weight (kDa)

4.61

Isoelectric Point (pI)

72.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017575)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g14570 FvH4_3g24840
malus_domestica	MD06G1132800.v1.1
rosa_laevigata	RLG00000008407 RLG00000016476 RLG00000022590
rosa_multiflora	Rmu_sc0003990.1_g000002
rosa_samantha	Rh1CG261300 Rh4CG007400 Rh4CG180700 Rh5AG034800 Rh5CG037200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	79
AccII	CGCG	2 cut(s)	25, 268
AciI	CCGC	3 cut(s)	25, 164, 210
AcoI	YGGCCR	1 cut(s)	157
AcyI	GRCGYC	2 cut(s)	83, 98
AfiI	CCNNNNNNNGG	1 cut(s)	63
AgsI	TTSAA	1 cut(s)	297
AjnI	CCWGG	1 cut(s)	154
Alw26I	GTCTC	1 cut(s)	264
Ama87I	CYCGRG	1 cut(s)	140
AoxI	GGCC	1 cut(s)	157
AspLEI	GCGC	3 cut(s)	175, 200, 268
AvaI	CYCGRG	1 cut(s)	140
BalI	TGGCCA	1 cut(s)	159
BbsI	GAAGAC	2 cut(s)	171, 212
BccI	CCATC	1 cut(s)	73
BceAI	ACGGC	1 cut(s)	160
BciT130I	CCWGG	1 cut(s)	156
BciVI	GTATCC	1 cut(s)	24
BcoDI	GTCTC	1 cut(s)	264
BfoI	RGCGCY	1 cut(s)	201
BfuAI	ACCTGC	1 cut(s)	79
BfuI	GTATCC	1 cut(s)	24
BglII	AGATCT	1 cut(s)	251
BisI	GCNGC	3 cut(s)	26, 164, 211
BlsI	GCNGC	3 cut(s)	27, 165, 212
Bme1390I	CCNGG	1 cut(s)	156
BmeT110I	CYCGRG	1 cut(s)	140
BmiI	GGNNCC	2 cut(s)	68, 146
BmrFI	CCNGG	1 cut(s)	156
BpiI	GAAGAC	2 cut(s)	171, 212
BpmI	CTGGAG	1 cut(s)	172
BsaHI	GRCGYC	2 cut(s)	83, 98
BsaJI	CCNNGG	1 cut(s)	154
Bsc4I	CCNNNNNNNGG	1 cut(s)	63
Bse118I	RCCGGY	1 cut(s)	7
Bse1I	ACTGG	2 cut(s)	49, 306
BseBI	CCWGG	1 cut(s)	156
BseDI	CCNNGG	1 cut(s)	154
BseLI	CCNNNNNNNGG	1 cut(s)	63
BseMII	CTCAG	1 cut(s)	32
BseNI	ACTGG	2 cut(s)	49, 306
Bsh1236I	CGCG	2 cut(s)	25, 268
BshFI	GGCC	1 cut(s)	159
BsiHKCI	CYCGRG	1 cut(s)	140
BsiSI	CCGG	3 cut(s)	8, 224, 263
BslI	CCNNNNNNNGG	1 cut(s)	63
BsmAI	GTCTC	1 cut(s)	264
BsmBI	CGTCTC	1 cut(s)	264
BsnI	GGCC	1 cut(s)	159
BsoBI	CYCGRG	1 cut(s)	140
Bsp143I	GATC	2 cut(s)	136, 251
BspACI	CCGC	3 cut(s)	25, 164, 210
BspANI	GGCC	1 cut(s)	159
BspCNI	CTCAG	1 cut(s)	31
BspFNI	CGCG	2 cut(s)	25, 268
BspLI	GGNNCC	2 cut(s)	68, 146
BspMI	ACCTGC	1 cut(s)	79
BsrFI	RCCGGY	1 cut(s)	7
BsrI	ACTGG	2 cut(s)	49, 306
BssAI	RCCGGY	1 cut(s)	7
BssECI	CCNNGG	1 cut(s)	154
BssMI	GATC	2 cut(s)	136, 251
BssNI	GRCGYC	2 cut(s)	83, 98
Bst2UI	CCWGG	1 cut(s)	156
Bst4CI	ACNGT	2 cut(s)	58, 112
BstACI	GRCGYC	2 cut(s)	83, 98
BstC8I	GCNNGC	2 cut(s)	9, 161
BstDEI	CTNAG	1 cut(s)	18
BstFNI	CGCG	2 cut(s)	25, 268
BstH2I	RGCGCY	1 cut(s)	201
BstHHI	GCGC	3 cut(s)	175, 200, 268
BstKTI	GATC	2 cut(s)	139, 254
BstMAI	GTCTC	1 cut(s)	264
BstMBI	GATC	2 cut(s)	136, 251
BstMWI	GCNNNNNNNGC	1 cut(s)	172
BstNI	CCWGG	1 cut(s)	156
BstSCI	CCNGG	1 cut(s)	154
BstUI	CGCG	2 cut(s)	25, 268
BstV2I	GAAGAC	2 cut(s)	171, 212
BstX2I	RGATCY	1 cut(s)	251
BstYI	RGATCY	1 cut(s)	251
BsuI	GTATCC	1 cut(s)	24
BsuRI	GGCC	1 cut(s)	159
BtsI	GCAGTG	1 cut(s)	220
BtsIMutI	CAGTG	1 cut(s)	220
BveI	ACCTGC	1 cut(s)	79
Cac8I	GCNNGC	2 cut(s)	9, 161
CfoI	GCGC	3 cut(s)	175, 200, 268
Cfr10I	RCCGGY	1 cut(s)	7
CseI	GACGC	2 cut(s)	72, 87
CviAII	CATG	2 cut(s)	94, 170
CviJI	RGCY	3 cut(s)	28, 159, 163
CviKI_1	RGCY	3 cut(s)	28, 159, 163
DdeI	CTNAG	1 cut(s)	18
DpnI	GATC	2 cut(s)	138, 253
DpnII	GATC	2 cut(s)	136, 251
EaeI	YGGCCR	1 cut(s)	157
Eco88I	CYCGRG	1 cut(s)	140
EcoRII	CCWGG	1 cut(s)	154
Esp3I	CGTCTC	1 cut(s)	264
FaeI	CATG	2 cut(s)	97, 173
FaiI	YATR	3 cut(s)	95, 126, 171
FatI	CATG	2 cut(s)	93, 169
Fnu4HI	GCNGC	3 cut(s)	26, 164, 211
Fsp4HI	GCNGC	3 cut(s)	26, 164, 211
GlaI	GCGC	3 cut(s)	174, 199, 267
GluI	GCNGC	3 cut(s)	26, 164, 211
GsuI	CTGGAG	1 cut(s)	172
HaeII	RGCGCY	1 cut(s)	201
HaeIII	GGCC	1 cut(s)	159
HapII	CCGG	3 cut(s)	8, 224, 263
HgaI	GACGC	2 cut(s)	72, 87
HhaI	GCGC	3 cut(s)	175, 200, 268
Hin1I	GRCGYC	2 cut(s)	83, 98
Hin1II	CATG	2 cut(s)	97, 173
Hin6I	GCGC	3 cut(s)	173, 198, 266
HinP1I	GCGC	3 cut(s)	173, 198, 266
HinfI	GANTC	3 cut(s)	48, 150, 238
HpaII	CCGG	3 cut(s)	8, 224, 263
Hpy188I	TCNGA	1 cut(s)	149
Hpy188III	TCNNGA	1 cut(s)	297
Hpy99I	CGWCG	3 cut(s)	88, 103, 112
HpyAV	CCTTC	1 cut(s)	45
HpyCH4III	ACNGT	2 cut(s)	58, 112
HpyCH4IV	ACGT	1 cut(s)	75
HpyF10VI	GCNNNNNNNGC	1 cut(s)	172
HpyF3I	CTNAG	1 cut(s)	18
HpySE526I	ACGT	1 cut(s)	75
Hsp92I	GRCGYC	2 cut(s)	83, 98
Hsp92II	CATG	2 cut(s)	97, 173
HspAI	GCGC	3 cut(s)	173, 198, 266
KroI	GCCGGC	1 cut(s)	7
KroNI	GCCGGC	1 cut(s)	9
Kzo9I	GATC	2 cut(s)	136, 251
MaeII	ACGT	1 cut(s)	75
MaeIII	GTNAC	1 cut(s)	40
MalI	GATC	2 cut(s)	138, 253
MboI	GATC	2 cut(s)	136, 251
MboII	GAAGA	2 cut(s)	171, 212
MflI	RGATCY	1 cut(s)	251
MlsI	TGGCCA	1 cut(s)	159
MluNI	TGGCCA	1 cut(s)	159
MlyI	GAGTC	1 cut(s)	232
MnlI	CCTC	4 cut(s)	27, 121, 177, 265
Mox20I	TGGCCA	1 cut(s)	159
MreI	CGCCGGCG	1 cut(s)	7
MroNI	GCCGGC	1 cut(s)	7
MscI	TGGCCA	1 cut(s)	159
Msp20I	TGGCCA	1 cut(s)	159
MspI	CCGG	3 cut(s)	8, 224, 263
MspR9I	CCNGG	1 cut(s)	156
MvaI	CCWGG	1 cut(s)	156
MvnI	CGCG	2 cut(s)	25, 268
MwoI	GCNNNNNNNGC	1 cut(s)	172
NaeI	GCCGGC	1 cut(s)	9
NdeII	GATC	2 cut(s)	136, 251
NgoMIV	GCCGGC	1 cut(s)	7
NlaIII	CATG	2 cut(s)	97, 173
NlaIV	GGNNCC	2 cut(s)	68, 146
NmuCI	GTSAC	1 cut(s)	40
PdiI	GCCGGC	1 cut(s)	9
PfeI	GAWTC	2 cut(s)	48, 150
PkrI	GCNGC	3 cut(s)	27, 165, 212
PleI	GAGTC	1 cut(s)	232
PpsI	GAGTC	1 cut(s)	232
Psp6I	CCWGG	1 cut(s)	154
PspGI	CCWGG	1 cut(s)	154
PspN4I	GGNNCC	2 cut(s)	68, 146
PsuI	RGATCY	1 cut(s)	251
SatI	GCNGC	3 cut(s)	26, 164, 211
Sau3AI	GATC	2 cut(s)	136, 251
SchI	GAGTC	1 cut(s)	232
ScrFI	CCNGG	1 cut(s)	156
SetI	ASST	2 cut(s)	78, 93
SgrAI	CRCCGGYG	1 cut(s)	7
SsiI	CCGC	3 cut(s)	25, 164, 210
StyD4I	CCNGG	1 cut(s)	154
TaaI	ACNGT	2 cut(s)	58, 112
TaiI	ACGT	1 cut(s)	78
TaqI	TCGA	2 cut(s)	241, 290
TauI	GCSGC	3 cut(s)	28, 166, 213
TfiI	GAWTC	2 cut(s)	48, 150
TscAI	CASTG	1 cut(s)	220
TseFI	GTSAC	1 cut(s)	40
Tsp45I	GTSAC	1 cut(s)	40
TspGWI	ACGGA	2 cut(s)	28, 246
TspRI	CASTG	1 cut(s)	220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.