FvH4_1g17240

Zinc-binding

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Forward (+)
9954060 .. 9955241
1182 bp
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UTR
Exon/CDS
Intron
FvH4_1g17240.t1

Sequence Viewer

Length: 237 bp
ATGGGAGGAGGCAACGGTCAGAAGGCCAAGATGGCACGTGAGAAGGCCCAGGAGAAGGCCAAAAACGCTGGAAAGGGAAGCCAGCTTGAAACTAACAAGAAAGCCATGTCAATCCAGTGCAAGGTGTGTATGCAAACATTTATGTGTACCACCTCGGAGGTGAAGTGCAGGGAACATGCTGAAGCAAAGCATCCCAAGTCAGATGTGTACGCCTGTTTCCCCCATCTCAAGCCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

79

Amino Acids

8.57

Weight (kDa)

9.48

Isoelectric Point (pI)

41.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SERF-like_N PF04419 3 - 36 4e-07 Small EDRK-rich factor 1/2-like, N-terminal
zf-met2 PF12907 39 - 76 2.5e-22 Zinc-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 201
AcvI CACGTG 1 cut(s) 38
AfaI GTAC 2 cut(s) 148, 209
AfiI CCNNNNNNNGG 2 cut(s) 55, 121
AgsI TTSAA 1 cut(s) 89
AjnI CCWGG 1 cut(s) 48
AluBI AGCT 1 cut(s) 85
AluI AGCT 1 cut(s) 85
AoxI GGCC 3 cut(s) 24, 45, 57
AspS9I GGNCC 1 cut(s) 46
AsuHPI GGTGA 1 cut(s) 172
BbrPI CACGTG 1 cut(s) 38
BccI CCATC 2 cut(s) 25, 231
BceAI ACGGC 1 cut(s) 217
BciT130I CCWGG 1 cut(s) 50
BglI GCCNNNNNGGC 1 cut(s) 32
Bme1390I CCNGG 1 cut(s) 50
BmgT120I GGNCC 1 cut(s) 46
BmrFI CCNGG 1 cut(s) 50
BmsI GCATC 1 cut(s) 199
BpuEI CTTGAG 1 cut(s) 212
BsaAI YACGTR 1 cut(s) 38
BsaJI CCNNGG 2 cut(s) 48, 153
BsaXI ACNNNNNCTCC 2 cut(s) 149, 179
Bsc4I CCNNNNNNNGG 2 cut(s) 55, 121
Bse1I ACTGG 1 cut(s) 115
BseBI CCWGG 1 cut(s) 50
BseDI CCNNGG 2 cut(s) 48, 153
BseGI GGATG 1 cut(s) 190
BseLI CCNNNNNNNGG 2 cut(s) 55, 121
BseNI ACTGG 1 cut(s) 115
BseRI GAGGAG 1 cut(s) 21
BsgI GTGCAG 1 cut(s) 187
BshFI GGCC 3 cut(s) 26, 47, 59
BslI CCNNNNNNNGG 2 cut(s) 55, 121
BsnI GGCC 3 cut(s) 26, 47, 59
BspANI GGCC 3 cut(s) 26, 47, 59
BsrI ACTGG 1 cut(s) 115
BssECI CCNNGG 2 cut(s) 48, 153
Bst2UI CCWGG 1 cut(s) 50
Bst4CI ACNGT 1 cut(s) 17
BstBAI YACGTR 1 cut(s) 38
BstC8I GCNNGC 1 cut(s) 83
BstF5I GGATG 1 cut(s) 190
BstMWI GCNNNNNNNGC 2 cut(s) 32, 65
BstNI CCWGG 1 cut(s) 50
BstNSI RCATGY 1 cut(s) 179
BstSCI CCNGG 1 cut(s) 48
BsuRI GGCC 3 cut(s) 26, 47, 59
BtsCI GGATG 1 cut(s) 190
BtsIMutI CAGTG 1 cut(s) 122
Cac8I GCNNGC 1 cut(s) 83
Cfr13I GGNCC 1 cut(s) 46
Csp6I GTAC 2 cut(s) 147, 208
CviAII CATG 2 cut(s) 106, 176
CviJI RGCY 7 cut(s) 26, 47, 59, 81, 85, 104, 232
CviKI_1 RGCY 7 cut(s) 26, 47, 59, 81, 85, 104, 232
CviQI GTAC 2 cut(s) 147, 208
Eco57I CTGAAG 1 cut(s) 201
Eco72I CACGTG 1 cut(s) 38
EcoRII CCWGG 1 cut(s) 48
FaeI CATG 2 cut(s) 109, 179
FaiI YATR 4 cut(s) 107, 131, 143, 177
FatI CATG 2 cut(s) 105, 175
FokI GGATG 1 cut(s) 177
HaeIII GGCC 3 cut(s) 26, 47, 59
Hin1II CATG 2 cut(s) 109, 179
HphI GGTGA 1 cut(s) 172
Hpy166II GTNNAC 2 cut(s) 147, 208
Hpy188I TCNGA 3 cut(s) 21, 157, 202
Hpy8I GTNNAC 2 cut(s) 147, 208
HpyAV CCTTC 3 cut(s) 16, 37, 49
HpyCH4III ACNGT 1 cut(s) 17
HpyCH4IV ACGT 1 cut(s) 37
HpyCH4V TGCA 3 cut(s) 120, 133, 168
HpyF10VI GCNNNNNNNGC 2 cut(s) 32, 65
HpySE526I ACGT 1 cut(s) 37
Hsp92II CATG 2 cut(s) 109, 179
LpnPI CCDG 7 cut(s) 35, 54, 62, 95, 128, 154, 226
LweI GCATC 1 cut(s) 199
MaeII ACGT 1 cut(s) 37
MnlI CCTC 2 cut(s) 151, 163
MslI CAYNNNNRTG 1 cut(s) 142
MspR9I CCNGG 1 cut(s) 50
MvaI CCWGG 1 cut(s) 50
MwoI GCNNNNNNNGC 2 cut(s) 32, 65
NlaIII CATG 2 cut(s) 109, 179
NspI RCATGY 1 cut(s) 179
PmaCI CACGTG 1 cut(s) 38
PmlI CACGTG 1 cut(s) 38
Ppu21I YACGTR 1 cut(s) 38
Psp6I CCWGG 1 cut(s) 48
PspCI CACGTG 1 cut(s) 38
PspGI CCWGG 1 cut(s) 48
PspPI GGNCC 1 cut(s) 46
RsaI GTAC 2 cut(s) 148, 209
RsaNI GTAC 2 cut(s) 147, 208
RseI CAYNNNNRTG 1 cut(s) 142
Sau96I GGNCC 1 cut(s) 46
ScrFI CCNGG 1 cut(s) 50
SetI ASST 5 cut(s) 40, 87, 126, 155, 162
SfaNI GCATC 1 cut(s) 199
SmiMI CAYNNNNRTG 1 cut(s) 142
SmlI CTYRAG 1 cut(s) 227
SmoI CTYRAG 1 cut(s) 227
StyD4I CCNGG 1 cut(s) 48
TaaI ACNGT 1 cut(s) 17
TaiI ACGT 1 cut(s) 40
TscAI CASTG 1 cut(s) 122
TspRI CASTG 1 cut(s) 122
XceI RCATGY 1 cut(s) 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.