Rorug02G0143500

At2g23090-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0003340
Physical Location & Seq
Forward (+)
12609745 .. 12612098
2354 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0143500.1

Sequence Viewer

Length: 1056 bp
ATGGAGGTGAGAGGCCAAGATAAGGTTTTAGGGATGCCAACCACTTTCGGGTTCAATCCCCAAAATAGAAACTCTTCTTCTTCTTCCAAGCTCTCGTCTCCACCAGCTCTTCATCATCATGTTAACAACACATTAATCTTCAACCACCCCCAAACCCTAGACCCTTTTTATCAGGCTCCACCTCATCATCATCATCAGCCTCAGCAATCGAATCCATACAAACCCAGTAGAGATCCTGACCCAATCCCTATCCCAAACCCAGATCCAAACCTATCACCAGCTGCTGTCTGCACCAGCCCAAGAGCAACAAGCGGCACACCAATTGCAAGCCGAGCAAGCCACAGCTTCAAAGCAGCACCATCGGCACCGGCACCTGAGCCAGTTACAGCTTCGAAAGCAGTTAGATATCGAGAATGCTTGAAGAATCACGCAGCGAGCACCGGAGGTCATGTACTGGATGGCTGCGGAGAGTTCATGCCGAGCGGAGAGGAAGACAGCCCTGGAGGACTAAAATGTGCAGCGTGTGAGTGCCACAGGAGTTTCCACAGGAAAGAGATCGAGGGTGAAACCCAACTAGTACATGTACCCAATAATTACCATGTCCTTAACCACCACAACAAAAACAGCCACAGCAGCCGGAATGCATCATCAGCACCTGTTCTATCCTCACTCCCCCCACCACCTCCTGTTCATCATCATCATCAGTACCATCATTTCCCAGCCACTAGTCCTTCCGTGGCGGGATCATTTCCTCCTGGGATGATGACTTTTGGAGGTGGCGGAGGGGCGGCCGAGTCATCTAGTGAGGATCTCAACCACATCCACATGTACGAGCAGTCAAATCAGGCCGGGGGTTCAAAGAAGCGGTTTCGGACAAAGTTCAGTCAAGAGCAGAAGGACAAGATGATGGAGGTGGCAGAAAAGTTGGGATGGAGGATCCAGAAGCACGATGAGCAAGAGGTGCAGCAGTTGTGTTCTGAATTGGGTATAAGGAGACAGGTTTTCAAGGTATGGATGCACAATAATAAACAAGCCATGAAGAAGAAGCAACTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
4F5 zf-met2

Protein Analysis

351

Amino Acids

38.64

Weight (kDa)

9.01

Isoelectric Point (pI)

75.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ZF-HD_dimer PF04770 134 - 186 3.7e-29 ZF-HD protein dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 364, 370
AccBSI CCGCTC 1 cut(s) 483
AciI CCGC 7 cut(s) 312, 465, 483, 740, 780, 788, 865
AclWI GGATC 6 cut(s) 227, 257, 751, 816, 931, 944
AcoI YGGCCR 1 cut(s) 789
AfaI GTAC 5 cut(s) 453, 579, 585, 707, 830
AfiI CCNNNNNNNGG 2 cut(s) 22, 48
AflIII ACRYGT 2 cut(s) 580, 825
AgsI TTSAA 6 cut(s) 55, 142, 349, 421, 858, 1006
AhlI ACTAGT 2 cut(s) 574, 725
AjnI CCWGG 2 cut(s) 499, 754
AluBI AGCT 5 cut(s) 91, 107, 281, 345, 389
AluI AGCT 5 cut(s) 91, 107, 281, 345, 389
Alw21I GWGCWC 1 cut(s) 440
Alw26I GTCTC 2 cut(s) 102, 988
AlwI GGATC 6 cut(s) 227, 257, 751, 816, 931, 944
AlwNI CAGNNNCTG 2 cut(s) 284, 656
AoxI GGCC 3 cut(s) 13, 789, 846
ApeKI GCWGC 7 cut(s) 281, 353, 431, 462, 518, 633, 964
AseI ATTAAT 1 cut(s) 134
Asp700I GAANNNNTTC 1 cut(s) 73
AsuC2I CCSGG 1 cut(s) 850
AsuHPI GGTGA 3 cut(s) 19, 267, 575
AsuII TTCGAA 1 cut(s) 392
BamHI GGATCC 1 cut(s) 936
BanI GGYRCC 2 cut(s) 364, 370
BbsI GAAGAC 1 cut(s) 498
Bbv12I GWGCWC 1 cut(s) 440
BbvCI CCTCAGC 1 cut(s) 201
BbvI GCAGC 7 cut(s) 268, 365, 443, 449, 530, 645, 976
BccI CCATC 5 cut(s) 367, 452, 717, 901, 924
BcgI CGANNNNNNTGC 2 cut(s) 342, 376
BciT130I CCWGG 2 cut(s) 501, 756
BcnI CCSGG 1 cut(s) 850
BcoDI GTCTC 2 cut(s) 102, 988
BcuI ACTAGT 2 cut(s) 574, 725
BfaI CTAG 4 cut(s) 158, 575, 726, 801
BisI GCNGC 9 cut(s) 282, 313, 354, 432, 463, 519, 634, 789, 965
BlsI GCNGC 9 cut(s) 283, 314, 355, 433, 464, 520, 635, 790, 966
Bme1390I CCNGG 3 cut(s) 501, 756, 850
BmiI GGNNCC 4 cut(s) 177, 366, 372, 938
BmrFI CCNGG 3 cut(s) 501, 756, 850
BmrI ACTGGG 1 cut(s) 219
BmsI GCATC 3 cut(s) 24, 653, 1005
BmuI ACTGGG 1 cut(s) 219
BpiI GAAGAC 1 cut(s) 498
BpmI CTGGAG 1 cut(s) 522
Bpu10I CCTNAGC 2 cut(s) 201, 375
Bpu14I TTCGAA 1 cut(s) 392
BpuMI CCSGG 1 cut(s) 850
BsaJI CCNNGG 4 cut(s) 499, 735, 755, 849
BsaWI WCCGGW 1 cut(s) 440
BsaXI ACNNNNNCTCC 2 cut(s) 435, 465
Bsc4I CCNNNNNNNGG 2 cut(s) 22, 48
Bse118I RCCGGY 1 cut(s) 367
Bse1I ACTGG 3 cut(s) 225, 380, 459
BseBI CCWGG 2 cut(s) 501, 756
BseDI CCNNGG 4 cut(s) 499, 735, 755, 849
BseGI GGATG 6 cut(s) 39, 463, 765, 819, 935, 1020
BseLI CCNNNNNNNGG 2 cut(s) 22, 48
BseMII CTCAG 2 cut(s) 215, 366
BseNI ACTGG 3 cut(s) 225, 380, 459
BseX3I CGGCCG 1 cut(s) 789
BseXI GCAGC 7 cut(s) 268, 365, 443, 449, 530, 645, 976
BseYI CCCAGC 1 cut(s) 718
BsgI GTGCAG 3 cut(s) 274, 537, 983
Bsh1285I CGRYCG 1 cut(s) 792
BshFI GGCC 3 cut(s) 15, 791, 848
BshNI GGYRCC 2 cut(s) 364, 370
BsiEI CGRYCG 1 cut(s) 792
BsiHKAI GWGCWC 1 cut(s) 440
BsiSI CCGG 4 cut(s) 368, 441, 637, 849
BslI CCNNNNNNNGG 2 cut(s) 22, 48
BsmAI GTCTC 2 cut(s) 102, 988
BsmBI CGTCTC 1 cut(s) 102
BsmI GAATGC 2 cut(s) 419, 646
BsnI GGCC 3 cut(s) 15, 791, 848
Bsp119I TTCGAA 1 cut(s) 392
Bsp1286I GDGCHC 1 cut(s) 440
Bsp143I GATC 6 cut(s) 232, 262, 555, 743, 808, 936
BspACI CCGC 7 cut(s) 312, 465, 483, 740, 780, 788, 865
BspANI GGCC 3 cut(s) 15, 791, 848
BspCNI CTCAG 2 cut(s) 214, 367
BspLI GGNNCC 4 cut(s) 177, 366, 372, 938
BspPI GGATC 6 cut(s) 227, 257, 751, 816, 931, 944
BspQI GCTCTTC 1 cut(s) 114
BspT104I TTCGAA 1 cut(s) 392
BspT107I GGYRCC 2 cut(s) 364, 370
BsrBI CCGCTC 1 cut(s) 483
BsrFI RCCGGY 1 cut(s) 367
BsrI ACTGG 3 cut(s) 225, 380, 459
BssAI RCCGGY 1 cut(s) 367
BssECI CCNNGG 4 cut(s) 499, 735, 755, 849
BssMI GATC 6 cut(s) 232, 262, 555, 743, 808, 936
Bst2UI CCWGG 2 cut(s) 501, 756
Bst4CI ACNGT 1 cut(s) 1053
Bst6I CTCTTC 2 cut(s) 79, 114
BstAPI GCANNNNNTGC 1 cut(s) 961
BstBI TTCGAA 1 cut(s) 392
BstC8I GCNNGC 3 cut(s) 328, 337, 436
BstDEI CTNAG 2 cut(s) 201, 375
BstDSI CCRYGG 1 cut(s) 735
BstF5I GGATG 6 cut(s) 39, 463, 765, 819, 935, 1020
BstKTI GATC 6 cut(s) 235, 265, 558, 746, 811, 939
BstMAI GTCTC 2 cut(s) 102, 988
BstMBI GATC 6 cut(s) 232, 262, 555, 743, 808, 936
BstMCI CGRYCG 1 cut(s) 792
BstMWI GCNNNNNNNGC 8 cut(s) 332, 336, 362, 395, 633, 650, 952, 961
BstNI CCWGG 2 cut(s) 501, 756
BstNSI RCATGY 2 cut(s) 584, 829
BstSCI CCNGG 3 cut(s) 499, 754, 848
BstV1I GCAGC 7 cut(s) 268, 365, 443, 449, 530, 645, 976
BstV2I GAAGAC 1 cut(s) 498
BstX2I RGATCY 4 cut(s) 232, 262, 808, 936
BstYI RGATCY 4 cut(s) 232, 262, 808, 936
BstZI CGGCCG 1 cut(s) 789
BsuRI GGCC 3 cut(s) 15, 791, 848
BtgI CCRYGG 1 cut(s) 735
BtsCI GGATG 6 cut(s) 39, 463, 765, 819, 935, 1020
Cac8I GCNNGC 3 cut(s) 328, 337, 436
CaiI CAGNNNCTG 2 cut(s) 284, 656
Cfr10I RCCGGY 1 cut(s) 367
Csp6I GTAC 5 cut(s) 452, 578, 584, 706, 829
CviAII CATG 7 cut(s) 119, 449, 475, 581, 599, 826, 1036
CviQI GTAC 5 cut(s) 452, 578, 584, 706, 829
DdeI CTNAG 2 cut(s) 201, 375
DpnI GATC 6 cut(s) 234, 264, 557, 745, 810, 938
DpnII GATC 6 cut(s) 232, 262, 555, 743, 808, 936
EaeI YGGCCR 1 cut(s) 789
EagI CGGCCG 1 cut(s) 789
Eam1104I CTCTTC 2 cut(s) 79, 114
EarI CTCTTC 2 cut(s) 79, 114
EciI GGCGGA 1 cut(s) 795
EclXI CGGCCG 1 cut(s) 789
Eco32I GATATC 1 cut(s) 407
Eco52I CGGCCG 1 cut(s) 789
EcoRII CCWGG 2 cut(s) 499, 754
EcoRV GATATC 1 cut(s) 407
EcoT22I ATGCAT 1 cut(s) 646
Esp3I CGTCTC 1 cut(s) 102
FaeI CATG 7 cut(s) 122, 452, 478, 584, 602, 829, 1039
FatI CATG 7 cut(s) 118, 448, 474, 580, 598, 825, 1035
FauI CCCGC 1 cut(s) 733
Fnu4HI GCNGC 9 cut(s) 282, 313, 354, 432, 463, 519, 634, 789, 965
FokI GGATG 6 cut(s) 46, 470, 772, 806, 942, 1027
Fsp4HI GCNGC 9 cut(s) 282, 313, 354, 432, 463, 519, 634, 789, 965
FspBI CTAG 4 cut(s) 158, 575, 726, 801
GluI GCNGC 9 cut(s) 282, 313, 354, 432, 463, 519, 634, 789, 965
GsaI CCCAGC 1 cut(s) 722
GsuI CTGGAG 1 cut(s) 522
HaeIII GGCC 3 cut(s) 15, 791, 848
HapII CCGG 4 cut(s) 368, 441, 637, 849
Hin1II CATG 7 cut(s) 122, 452, 478, 584, 602, 829, 1039
HincII GTYRAC 1 cut(s) 124
HindII GTYRAC 1 cut(s) 124
HinfI GANTC 3 cut(s) 211, 424, 794
HpaI GTTAAC 1 cut(s) 124
HpaII CCGG 4 cut(s) 368, 441, 637, 849
HphI GGTGA 3 cut(s) 19, 267, 575
Hpy166II GTNNAC 1 cut(s) 124
Hpy188I TCNGA 2 cut(s) 873, 979
Hpy188III TCNNGA 4 cut(s) 236, 410, 887, 940
Hpy8I GTNNAC 1 cut(s) 124
HpyAV CCTTC 2 cut(s) 741, 889
HpyCH4III ACNGT 1 cut(s) 1053
HpyCH4V TGCA 6 cut(s) 291, 326, 518, 644, 964, 1018
HpyF10VI GCNNNNNNNGC 8 cut(s) 332, 336, 362, 395, 633, 650, 952, 961
HpyF3I CTNAG 2 cut(s) 201, 375
Hsp92II CATG 7 cut(s) 122, 452, 478, 584, 602, 829, 1039
KspAI GTTAAC 1 cut(s) 124
Kzo9I GATC 6 cut(s) 232, 262, 555, 743, 808, 936
LguI GCTCTTC 1 cut(s) 114
LmnI GCTCC 1 cut(s) 181
Lsp1109I GCAGC 7 cut(s) 268, 365, 443, 449, 530, 645, 976
LweI GCATC 3 cut(s) 24, 653, 1005
MaeI CTAG 4 cut(s) 158, 575, 726, 801
MaeIII GTNAC 1 cut(s) 382
MalI GATC 6 cut(s) 234, 264, 557, 745, 810, 938
MbiI CCGCTC 1 cut(s) 483
MboI GATC 6 cut(s) 232, 262, 555, 743, 808, 936
MfeI CAATTG 1 cut(s) 321
MflI RGATCY 4 cut(s) 232, 262, 808, 936
MhlI GDGCHC 1 cut(s) 440
MluCI AATT 3 cut(s) 321, 592, 980
MlyI GAGTC 1 cut(s) 803
Mph1103I ATGCAT 1 cut(s) 646
MroXI GAANNNNTTC 1 cut(s) 73
MseI TTAA 3 cut(s) 123, 134, 606
MslI CAYNNNNRTG 2 cut(s) 117, 824
MspA1I CMGCKG 1 cut(s) 281
MspI CCGG 4 cut(s) 368, 441, 637, 849
MspR9I CCNGG 3 cut(s) 501, 756, 850
MunI CAATTG 1 cut(s) 321
Mva1269I GAATGC 2 cut(s) 419, 646
MvaI CCWGG 2 cut(s) 501, 756
MwoI GCNNNNNNNGC 8 cut(s) 332, 336, 362, 395, 633, 650, 952, 961
NciI CCSGG 1 cut(s) 850
NdeII GATC 6 cut(s) 232, 262, 555, 743, 808, 936
NlaIII CATG 7 cut(s) 122, 452, 478, 584, 602, 829, 1039
NlaIV GGNNCC 4 cut(s) 177, 366, 372, 938
NmeAIII GCCGAG 3 cut(s) 356, 504, 817
NsiI ATGCAT 1 cut(s) 646
NspI RCATGY 2 cut(s) 584, 829
NspV TTCGAA 1 cut(s) 392
PciI ACATGT 2 cut(s) 580, 825
PciSI GCTCTTC 1 cut(s) 114
PctI GAATGC 2 cut(s) 419, 646
PdmI GAANNNNTTC 1 cut(s) 73
PfeI GAWTC 2 cut(s) 211, 424
PkrI GCNGC 9 cut(s) 283, 314, 355, 433, 464, 520, 635, 790, 966
PleI GAGTC 1 cut(s) 802
PpsI GAGTC 1 cut(s) 802
PscI ACATGT 2 cut(s) 580, 825
PshBI ATTAAT 1 cut(s) 134
Psp6I CCWGG 2 cut(s) 499, 754
PspFI CCCAGC 1 cut(s) 718
PspGI CCWGG 2 cut(s) 499, 754
PspN4I GGNNCC 4 cut(s) 177, 366, 372, 938
PstNI CAGNNNCTG 2 cut(s) 284, 656
PsuI RGATCY 4 cut(s) 232, 262, 808, 936
PvuII CAGCTG 1 cut(s) 281
RsaI GTAC 5 cut(s) 453, 579, 585, 707, 830
RsaNI GTAC 5 cut(s) 452, 578, 584, 706, 829
RseI CAYNNNNRTG 2 cut(s) 117, 824
SapI GCTCTTC 1 cut(s) 114
SaqAI TTAA 3 cut(s) 123, 134, 606
SatI GCNGC 9 cut(s) 282, 313, 354, 432, 463, 519, 634, 789, 965
Sau3AI GATC 6 cut(s) 232, 262, 555, 743, 808, 936
SchI GAGTC 1 cut(s) 803
ScrFI CCNGG 3 cut(s) 501, 756, 850
SduI GDGCHC 1 cut(s) 440
SfaNI GCATC 3 cut(s) 24, 653, 1005
SfuI TTCGAA 1 cut(s) 392
SmiMI CAYNNNNRTG 2 cut(s) 117, 824
SpeI ACTAGT 2 cut(s) 574, 725
Sse9I AATT 3 cut(s) 321, 592, 980
SsiI CCGC 7 cut(s) 312, 465, 483, 740, 780, 788, 865
SspMI CTAG 4 cut(s) 158, 575, 726, 801
StyD4I CCNGG 3 cut(s) 499, 754, 848
TaaI ACNGT 1 cut(s) 1053
TaqI TCGA 4 cut(s) 209, 392, 409, 558
TasI AATT 3 cut(s) 321, 592, 980
TatI WGTACW 2 cut(s) 451, 577
TauI GCSGC 2 cut(s) 315, 791
TfiI GAWTC 2 cut(s) 211, 424
Tru1I TTAA 3 cut(s) 123, 134, 606
Tru9I TTAA 3 cut(s) 123, 134, 606
TseI GCWGC 7 cut(s) 281, 353, 431, 462, 518, 633, 964
TspDTI ATGAA 4 cut(s) 101, 463, 680, 1052
TspGWI ACGGA 1 cut(s) 724
VspI ATTAAT 1 cut(s) 134
XceI RCATGY 2 cut(s) 584, 829
XmnI GAANNNNTTC 1 cut(s) 73
XspI CTAG 4 cut(s) 158, 575, 726, 801
Zsp2I ATGCAT 1 cut(s) 646
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.