FvH4_2g33310

Zinc-binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0003340
Physical Location & Seq
Reverse (-)
25019879 .. 25021307
1429 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g33310.t1

Sequence Viewer

Length: 234 bp
ATGGGTGGAGGCAACGGTCAGAAGTCGAAGACGGCTCGACTGAGGAACTTGGAGAAGCAAAAACCTGCTAAAGGAAGCCAGCTTGACTCGAACAAGAAAGCGATGACAATCCAGTGCAAGGTATGCATGCAGGCGTTTATCTGCACCACAACTGAGGTCAAGTGCAGGGAACATGCAGAGGCAAAGCATCCCAAATCTGATGTTTATGCATGCTTTCCTCACCTTCAAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
4F5 zf-met2

Protein Analysis

78

Amino Acids

8.56

Weight (kDa)

9.64

Isoelectric Point (pI)

46.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-met2 PF12907 38 - 75 4.7e-21 Zinc-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 73
AfiI CCNNNNNNNGG 2 cut(s) 71, 118
AgsI TTSAA 1 cut(s) 227
AluBI AGCT 1 cut(s) 82
AluI AGCT 1 cut(s) 82
AsuHPI GGTGA 1 cut(s) 212
BbsI GAAGAC 1 cut(s) 35
BceAI ACGGC 1 cut(s) 48
BfuAI ACCTGC 1 cut(s) 73
BmsI GCATC 1 cut(s) 196
BpiI GAAGAC 1 cut(s) 35
BsaBI GATNNNNATC 1 cut(s) 107
Bsc4I CCNNNNNNNGG 2 cut(s) 71, 118
Bse1I ACTGG 1 cut(s) 112
Bse8I GATNNNNATC 1 cut(s) 107
BseGI GGATG 1 cut(s) 187
BseJI GATNNNNATC 1 cut(s) 107
BseLI CCNNNNNNNGG 2 cut(s) 71, 118
BseMII CTCAG 2 cut(s) 32, 144
BseNI ACTGG 1 cut(s) 112
BsgI GTGCAG 2 cut(s) 127, 184
BslI CCNNNNNNNGG 2 cut(s) 71, 118
BspCNI CTCAG 2 cut(s) 33, 145
BspMI ACCTGC 1 cut(s) 73
BsrI ACTGG 1 cut(s) 112
Bst4CI ACNGT 1 cut(s) 17
BstAPI GCANNNNNTGC 1 cut(s) 123
BstC8I GCNNGC 4 cut(s) 80, 128, 132, 211
BstDEI CTNAG 2 cut(s) 41, 153
BstENI CCTNNNNNAGG 1 cut(s) 69
BstF5I GGATG 1 cut(s) 187
BstMWI GCNNNNNNNGC 1 cut(s) 123
BstNSI RCATGY 3 cut(s) 130, 176, 213
BstV2I GAAGAC 1 cut(s) 35
BtgZI GCGATG 1 cut(s) 116
BtsCI GGATG 1 cut(s) 187
BtsIMutI CAGTG 1 cut(s) 119
BveI ACCTGC 1 cut(s) 73
Cac8I GCNNGC 4 cut(s) 80, 128, 132, 211
CviAII CATG 3 cut(s) 127, 173, 210
CviJI RGCY 3 cut(s) 35, 78, 82
CviKI_1 RGCY 3 cut(s) 35, 78, 82
DdeI CTNAG 2 cut(s) 41, 153
EcoNI CCTNNNNNAGG 1 cut(s) 69
EcoT22I ATGCAT 2 cut(s) 128, 211
FaeI CATG 3 cut(s) 130, 176, 213
FaiI YATR 5 cut(s) 124, 128, 174, 207, 211
FatI CATG 3 cut(s) 126, 172, 209
FokI GGATG 1 cut(s) 174
Hin1II CATG 3 cut(s) 130, 176, 213
HinfI GANTC 1 cut(s) 86
HphI GGTGA 1 cut(s) 212
Hpy188I TCNGA 2 cut(s) 21, 199
HpyAV CCTTC 1 cut(s) 233
HpyCH4III ACNGT 1 cut(s) 17
HpyCH4V TGCA 7 cut(s) 117, 126, 130, 144, 165, 176, 209
HpyF10VI GCNNNNNNNGC 1 cut(s) 123
HpyF3I CTNAG 2 cut(s) 41, 153
Hsp92II CATG 3 cut(s) 130, 176, 213
LpnPI CCDG 5 cut(s) 78, 92, 116, 125, 151
LweI GCATC 1 cut(s) 196
MboII GAAGA 1 cut(s) 40
MlyI GAGTC 1 cut(s) 80
MnlI CCTC 4 cut(s) 36, 148, 172, 228
Mph1103I ATGCAT 2 cut(s) 128, 211
MwoI GCNNNNNNNGC 1 cut(s) 123
NlaIII CATG 3 cut(s) 130, 176, 213
NsiI ATGCAT 2 cut(s) 128, 211
NspI RCATGY 3 cut(s) 130, 176, 213
PaeI GCATGC 2 cut(s) 130, 213
PleI GAGTC 1 cut(s) 80
PpsI GAGTC 1 cut(s) 80
SchI GAGTC 1 cut(s) 80
SetI ASST 5 cut(s) 67, 84, 123, 159, 225
SfaNI GCATC 1 cut(s) 196
SphI GCATGC 2 cut(s) 130, 213
TaaI ACNGT 1 cut(s) 17
TaqI TCGA 3 cut(s) 26, 37, 89
TscAI CASTG 1 cut(s) 119
TspRI CASTG 1 cut(s) 119
XagI CCTNNNNNAGG 1 cut(s) 69
XceI RCATGY 3 cut(s) 130, 176, 213
Zsp2I ATGCAT 2 cut(s) 128, 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.