Rorug06G0370900

Zinc-binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0003340
Physical Location & Seq
Forward (+)
51789782 .. 51791841
2060 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0370900.1

Sequence Viewer

Length: 852 bp
ATGAATGAATATGTGGAATGGTCTGTTAACAATTCTCCAGGCAAAGTTTACAGGAACAATATGAATATGAATATGATATATACTGAGGAATGGTCTGTTAACAATTCTCCAGGCAAAGTTTACAGGGACATTGTTGGGAGTGCCTACTATGTGGCGCCAGAAGTGTTGCGGCGGAATTATGGGAAAGAGATAGATGTTTGGAGTGCTGGAGTCATCTTGTATATTCTTCTAAGTGGAGTACCTCCATTTTGGGCGGAGACCGAGAAAGGGATATTTTACTCAATTATAGAAGGAAAACTTGACTTGCATAGTGCGCCATGGCCTTCTATATCTGATGCGGCAAAGGATCTCATCAGGAAAATGTTAACAATGGACCCTAAGAAAAGGATTACAGCTGCTGACGTTCTTGAGCATCAATGGATGAAGAAAGATGGTGAAGCATCTGACAAACCGATTGATAGTGCTTTGCTGATTAGGATGAAACAGTTCGGAGCAATGAACAAGTTGAAGAAACTTGCTCTAAAGGCTGACATAGACAATTATGGGACTATTGATTACACTGAATTCATTACTGCAACCATGAATCGACACAAACTGGAGAAGGAAGAAAACTTGTACAAGGCTTTCCTTTACTTTGACAAGGATCAGAGCGGGTTTATCACAAGAGATGAGCTAAGACAAGCAATGACTGAATATGGGATGGGGGATGAGGCTACGATAGATGAAGTCCTTGAAGATGTGGATACTGATAAGGATGGGAGAATCAGTTATGAGGAGTTCGTAGCCATGATGACACGGGGGGTTGCAGATTACGATGATGAACCAGATAGGGTGATTGTTCTACCTGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
4F5 zf-met2

Protein Analysis

283

Amino Acids

32.56

Weight (kDa)

4.78

Isoelectric Point (pI)

30.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 39 - 141 9.9e-28 Protein kinase domain
EF-hand_7 PF13499 202 - 265 3.6e-17 EF-hand domain pair
EF-hand_6 PF13405 205 - 233 1.6e-07 EF-hand domain
EF-hand_1 PF00036 206 - 231 8.5e-07 EF hand domain
EF-hand_8 PF13833 217 - 266 1e-06 EF-hand domain pair
EF-hand_1 PF00036 240 - 266 7.6e-08 EF hand domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 154
AccBSI CCGCTC 1 cut(s) 651
AciI CCGC 5 cut(s) 169, 172, 254, 338, 651
AclWI GGATC 2 cut(s) 354, 651
AcsI RAATTY 1 cut(s) 563
AcyI GRCGYC 1 cut(s) 155
AfaI GTAC 2 cut(s) 240, 617
AfiI CCNNNNNNNGG 1 cut(s) 267
AgsI TTSAA 2 cut(s) 508, 734
AjnI CCWGG 2 cut(s) 37, 109
AluBI AGCT 2 cut(s) 395, 673
AluI AGCT 2 cut(s) 395, 673
Alw26I GTCTC 1 cut(s) 251
AlwI GGATC 2 cut(s) 354, 651
AlwNI CAGNNNCTG 1 cut(s) 398
AoxI GGCC 1 cut(s) 320
ApeKI GCWGC 1 cut(s) 395
ApoI RAATTY 1 cut(s) 563
Asp700I GAANNNNTTC 1 cut(s) 485
AspLEI GCGC 2 cut(s) 157, 316
AspS9I GGNCC 1 cut(s) 373
AsuHPI GGTGA 2 cut(s) 446, 844
AvaII GGWCC 1 cut(s) 373
BanI GGYRCC 1 cut(s) 154
BbvI GCAGC 1 cut(s) 382
BccI CCATC 3 cut(s) 425, 694, 749
BciT130I CCWGG 2 cut(s) 39, 111
BciVI GTATCC 1 cut(s) 736
BcoDI GTCTC 1 cut(s) 251
BfoI RGCGCY 1 cut(s) 158
BfuI GTATCC 1 cut(s) 736
BisI GCNGC 3 cut(s) 170, 339, 396
BlsI GCNGC 3 cut(s) 171, 340, 397
Bme1390I CCNGG 2 cut(s) 39, 111
Bme18I GGWCC 1 cut(s) 373
BmgT120I GGNCC 1 cut(s) 373
BmiI GGNNCC 2 cut(s) 156, 375
BmrFI CCNGG 2 cut(s) 39, 111
BmsI GCATC 3 cut(s) 325, 421, 449
BpmI CTGGAG 4 cut(s) 21, 93, 228, 617
BpuEI CTTGAG 1 cut(s) 428
BsaHI GRCGYC 1 cut(s) 155
BsaI GGTCTC 1 cut(s) 251
BsaJI CCNNGG 1 cut(s) 317
BsaXI ACNNNNNCTCC 2 cut(s) 751, 781
Bsc4I CCNNNNNNNGG 1 cut(s) 267
Bse1I ACTGG 1 cut(s) 600
Bse3DI GCAATG 2 cut(s) 501, 690
BseBI CCWGG 2 cut(s) 39, 111
BseDI CCNNGG 1 cut(s) 317
BseGI GGATG 5 cut(s) 426, 483, 705, 712, 760
BseLI CCNNNNNNNGG 1 cut(s) 267
BseMI GCAATG 2 cut(s) 501, 690
BseMII CTCAG 1 cut(s) 75
BseNI ACTGG 1 cut(s) 600
BseRI GAGGAG 1 cut(s) 788
BseXI GCAGC 1 cut(s) 382
BshFI GGCC 1 cut(s) 322
BshNI GGYRCC 1 cut(s) 154
BslFI GGGAC 2 cut(s) 140, 559
BslI CCNNNNNNNGG 1 cut(s) 267
BsmAI GTCTC 1 cut(s) 251
BsmFI GGGAC 2 cut(s) 140, 559
BsnI GGCC 1 cut(s) 322
Bso31I GGTCTC 1 cut(s) 251
Bsp1407I TGTACA 1 cut(s) 615
Bsp143I GATC 2 cut(s) 346, 643
Bsp19I CCATGG 1 cut(s) 317
BspACI CCGC 5 cut(s) 169, 172, 254, 338, 651
BspANI GGCC 1 cut(s) 322
BspCNI CTCAG 1 cut(s) 76
BspLI GGNNCC 2 cut(s) 156, 375
BspPI GGATC 2 cut(s) 354, 651
BspT107I GGYRCC 1 cut(s) 154
BspTNI GGTCTC 1 cut(s) 251
BsrBI CCGCTC 1 cut(s) 651
BsrDI GCAATG 2 cut(s) 501, 690
BsrGI TGTACA 1 cut(s) 615
BsrI ACTGG 1 cut(s) 600
BssECI CCNNGG 1 cut(s) 317
BssMI GATC 2 cut(s) 346, 643
BssNI GRCGYC 1 cut(s) 155
BssT1I CCWWGG 1 cut(s) 317
Bst2UI CCWGG 2 cut(s) 39, 111
Bst4CI ACNGT 1 cut(s) 486
BstACI GRCGYC 1 cut(s) 155
BstAUI TGTACA 1 cut(s) 615
BstDEI CTNAG 4 cut(s) 84, 230, 378, 674
BstDSI CCRYGG 1 cut(s) 317
BstF5I GGATG 5 cut(s) 426, 483, 705, 712, 760
BstH2I RGCGCY 1 cut(s) 158
BstHHI GCGC 2 cut(s) 157, 316
BstKTI GATC 2 cut(s) 349, 646
BstMAI GTCTC 1 cut(s) 251
BstMBI GATC 2 cut(s) 346, 643
BstMWI GCNNNNNNNGC 2 cut(s) 313, 524
BstNI CCWGG 2 cut(s) 39, 111
BstSCI CCNGG 2 cut(s) 37, 109
BstV1I GCAGC 1 cut(s) 382
BstX2I RGATCY 1 cut(s) 346
BstYI RGATCY 1 cut(s) 346
BsuI GTATCC 1 cut(s) 736
BsuRI GGCC 1 cut(s) 322
BtgI CCRYGG 1 cut(s) 317
BtsCI GGATG 5 cut(s) 426, 483, 705, 712, 760
BtsIMutI CAGTG 1 cut(s) 558
CaiI CAGNNNCTG 1 cut(s) 398
CfoI GCGC 2 cut(s) 157, 316
Cfr13I GGNCC 1 cut(s) 373
Csp6I GTAC 2 cut(s) 239, 616
CviAII CATG 3 cut(s) 318, 580, 787
CviJI RGCY 7 cut(s) 322, 395, 527, 623, 673, 713, 785
CviKI_1 RGCY 7 cut(s) 322, 395, 527, 623, 673, 713, 785
CviQI GTAC 2 cut(s) 239, 616
DdeI CTNAG 4 cut(s) 84, 230, 378, 674
DinI GGCGCC 1 cut(s) 156
DpnI GATC 2 cut(s) 348, 645
DpnII GATC 2 cut(s) 346, 643
EciI GGCGGA 2 cut(s) 187, 269
Eco130I CCWWGG 1 cut(s) 317
Eco31I GGTCTC 1 cut(s) 251
Eco47I GGWCC 1 cut(s) 373
EcoRI GAATTC 1 cut(s) 563
EcoRII CCWGG 2 cut(s) 37, 109
EcoT14I CCWWGG 1 cut(s) 317
EgeI GGCGCC 1 cut(s) 156
EheI GGCGCC 1 cut(s) 156
ErhI CCWWGG 1 cut(s) 317
FaeI CATG 3 cut(s) 321, 583, 790
FalI AAGNNNNNCTT 2 cut(s) 282, 314
FaqI GGGAC 2 cut(s) 140, 559
FatI CATG 3 cut(s) 317, 579, 786
FauI CCCGC 1 cut(s) 644
Fnu4HI GCNGC 3 cut(s) 170, 339, 396
FokI GGATG 5 cut(s) 433, 490, 712, 719, 767
Fsp4HI GCNGC 3 cut(s) 170, 339, 396
GlaI GCGC 2 cut(s) 156, 315
GluI GCNGC 3 cut(s) 170, 339, 396
GsuI CTGGAG 4 cut(s) 21, 93, 228, 617
HaeII RGCGCY 1 cut(s) 158
HaeIII GGCC 1 cut(s) 322
HhaI GCGC 2 cut(s) 157, 316
Hin1I GRCGYC 1 cut(s) 155
Hin1II CATG 3 cut(s) 321, 583, 790
Hin6I GCGC 2 cut(s) 155, 314
HinP1I GCGC 2 cut(s) 155, 314
HincII GTYRAC 3 cut(s) 28, 100, 366
HindII GTYRAC 3 cut(s) 28, 100, 366
HinfI GANTC 3 cut(s) 210, 583, 762
HpaI GTTAAC 3 cut(s) 28, 100, 366
HphI GGTGA 2 cut(s) 446, 844
Hpy166II GTNNAC 5 cut(s) 28, 49, 100, 121, 366
Hpy188I TCNGA 4 cut(s) 334, 445, 491, 648
Hpy188III TCNNGA 2 cut(s) 355, 407
Hpy8I GTNNAC 5 cut(s) 28, 49, 100, 121, 366
HpyAV CCTTC 3 cut(s) 284, 333, 595
HpyCH4III ACNGT 1 cut(s) 486
HpyCH4IV ACGT 1 cut(s) 402
HpyCH4V TGCA 3 cut(s) 307, 575, 806
HpyF10VI GCNNNNNNNGC 2 cut(s) 313, 524
HpyF3I CTNAG 4 cut(s) 84, 230, 378, 674
HpySE526I ACGT 1 cut(s) 402
Hsp92I GRCGYC 1 cut(s) 155
Hsp92II CATG 3 cut(s) 321, 583, 790
HspAI GCGC 2 cut(s) 155, 314
KasI GGCGCC 1 cut(s) 154
KspAI GTTAAC 3 cut(s) 28, 100, 366
Kzo9I GATC 2 cut(s) 346, 643
LmnI GCTCC 1 cut(s) 491
Lsp1109I GCAGC 1 cut(s) 382
LweI GCATC 3 cut(s) 325, 421, 449
MaeII ACGT 1 cut(s) 402
MalI GATC 2 cut(s) 348, 645
MbiI CCGCTC 1 cut(s) 651
MboI GATC 2 cut(s) 346, 643
MboII GAAGA 5 cut(s) 218, 436, 520, 617, 746
MflI RGATCY 1 cut(s) 346
MluCI AATT 6 cut(s) 31, 103, 175, 282, 538, 563
Mly113I GGCGCC 1 cut(s) 155
MlyI GAGTC 1 cut(s) 219
MnlI CCTC 4 cut(s) 79, 252, 703, 766
MroXI GAANNNNTTC 1 cut(s) 485
MseI TTAA 3 cut(s) 27, 99, 365
MspA1I CMGCKG 1 cut(s) 395
MspR9I CCNGG 2 cut(s) 39, 111
MvaI CCWGG 2 cut(s) 39, 111
MwoI GCNNNNNNNGC 2 cut(s) 313, 524
NarI GGCGCC 1 cut(s) 155
NcoI CCATGG 1 cut(s) 317
NdeII GATC 2 cut(s) 346, 643
NlaIII CATG 3 cut(s) 321, 583, 790
NlaIV GGNNCC 2 cut(s) 156, 375
PdmI GAANNNNTTC 1 cut(s) 485
PfeI GAWTC 2 cut(s) 583, 762
PkrI GCNGC 3 cut(s) 171, 340, 397
PleI GAGTC 1 cut(s) 218
PluTI GGCGCC 1 cut(s) 158
PpsI GAGTC 1 cut(s) 218
Psp6I CCWGG 2 cut(s) 37, 109
PspGI CCWGG 2 cut(s) 37, 109
PspN4I GGNNCC 2 cut(s) 156, 375
PspPI GGNCC 1 cut(s) 373
PstNI CAGNNNCTG 1 cut(s) 398
PsuI RGATCY 1 cut(s) 346
PvuII CAGCTG 1 cut(s) 395
RsaI GTAC 2 cut(s) 240, 617
RsaNI GTAC 2 cut(s) 239, 616
SaqAI TTAA 3 cut(s) 27, 99, 365
SatI GCNGC 3 cut(s) 170, 339, 396
Sau3AI GATC 2 cut(s) 346, 643
Sau96I GGNCC 1 cut(s) 373
SchI GAGTC 1 cut(s) 219
ScrFI CCNGG 2 cut(s) 39, 111
SetI ASST 5 cut(s) 244, 397, 405, 675, 847
SfaNI GCATC 3 cut(s) 325, 421, 449
SfoI GGCGCC 1 cut(s) 156
SinI GGWCC 1 cut(s) 373
SmlI CTYRAG 1 cut(s) 407
SmoI CTYRAG 1 cut(s) 407
Sse9I AATT 6 cut(s) 31, 103, 175, 282, 538, 563
SsiI CCGC 5 cut(s) 169, 172, 254, 338, 651
SspDI GGCGCC 1 cut(s) 154
StyD4I CCNGG 2 cut(s) 37, 109
StyI CCWWGG 1 cut(s) 317
TaaI ACNGT 1 cut(s) 486
TaiI ACGT 1 cut(s) 405
TaqI TCGA 1 cut(s) 586
TaqII GACCGA 1 cut(s) 275
TasI AATT 6 cut(s) 31, 103, 175, 282, 538, 563
TatI WGTACW 1 cut(s) 615
TauI GCSGC 2 cut(s) 172, 341
TfiI GAWTC 2 cut(s) 583, 762
Tru1I TTAA 3 cut(s) 27, 99, 365
Tru9I TTAA 3 cut(s) 27, 99, 365
TscAI CASTG 1 cut(s) 565
TseI GCWGC 1 cut(s) 395
TspRI CASTG 1 cut(s) 565
VpaK11BI GGWCC 1 cut(s) 373
XapI RAATTY 1 cut(s) 563
XmnI GAANNNNTTC 1 cut(s) 485
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.