Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0003340

Physical Location & Seq

Genomic Coordinates Forward (+)

27187030 .. 27188815

Gene Structure 1786 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1293500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

ATGGGAGGAGGCAACGGTCAGAAGGCCAAGATGGCGCGCGAGAAGAACTTGGAGAAGCAGAAGGCTGCCGGCAAAGGAAGTCAGCTTAAAACAAACGAGAAAGCCATGTCTATCCAGTGTAAGGTGTGCATGCAAGCATTTATGTGCACCACATCGGAAGTGAAGTGCAGGGAACATGCTGAGGCAAAGCATCCCAAGTCTGATGTCTACGCTTGTTTCCCTCATCTCAAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

4F5 zf-met2

Protein Analysis

79

Amino Acids

8.62

Weight (kDa)

9.57

Isoelectric Point (pI)

36.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SERF-like_N	PF04419	3 - 36	5.8e-09	Small EDRK-rich factor 1/2-like, N-terminal
zf-met2	PF12907	39 - 76	7e-22	Zinc-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0003340)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23090
fragaria_vesca	FvH4_1g17240 FvH4_2g33310
malus_domestica	MD08G1087600.v1.1 MD15G1072500.v1.1 MD15G1293500.v1.1
prunus_persica	Prupe.1G425100_v2.0.a1 Prupe.6G224000_v2.0.a1 Prupe.6G224000_v2.0.a1 Prupe.6G224000_v2.0.a1 Prupe.8G140800_v2.0.a1
pyrus_communis	pycom02g14770 pycom15g06780
rosa_chinensis	RchiOBHm_Chr2g0107431 RchiOBHm_Chr6g0252981 RchiOBHm_Chr6g0309311
rosa_multiflora	Rmu_sc0002560.1_g000004 Rmu_sc0007504.1_g000005 Rmu_sc0015692.1_g000003 Rmu_sc0025013.1_g000004 Rmu_sc0029870.1_g000001
rosa_roxburghii	Rroxscaffold_2G00136350 Rroxscaffold_7G00159500 Rroxscaffold_7G00212250
rosa_rugosa	Rorug02G0143500 Rorug02G0143500 Rorug06G0370800 Rorug06G0370800 Rorug06G0370900
rosa_samantha	Rh2AG193700 Rh2CG198900 Rh6AG484300 Rh6BG493400 Rh6CG498400 Rh6DG484900
rosa_wichuraiana	Rw2G015340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	207
AccII	CGCG	2 cut(s)	37, 39
AfiI	CCNNNNNNNGG	1 cut(s)	121
AluBI	AGCT	1 cut(s)	85
AluI	AGCT	1 cut(s)	85
Alw21I	GWGCWC	1 cut(s)	149
Alw44I	GTGCAC	1 cut(s)	145
AoxI	GGCC	1 cut(s)	24
ApaLI	GTGCAC	1 cut(s)	145
ApeKI	GCWGC	1 cut(s)	65
AspLEI	GCGC	2 cut(s)	37, 39
BaeGI	GKGCMC	1 cut(s)	149
Bbv12I	GWGCWC	1 cut(s)	149
BbvCI	CCTCAGC	1 cut(s)	180
BbvI	GCAGC	1 cut(s)	52
BccI	CCATC	1 cut(s)	25
BglI	GCCNNNNNGGC	1 cut(s)	32
BisI	GCNGC	1 cut(s)	66
BlsI	GCNGC	1 cut(s)	67
BmsI	GCATC	1 cut(s)	199
Bpu10I	CCTNAGC	1 cut(s)	180
BpuEI	CTTGAG	1 cut(s)	212
Bsc4I	CCNNNNNNNGG	1 cut(s)	121
Bse118I	RCCGGY	1 cut(s)	68
Bse1I	ACTGG	1 cut(s)	115
BseGI	GGATG	1 cut(s)	190
BseLI	CCNNNNNNNGG	1 cut(s)	121
BseMII	CTCAG	1 cut(s)	171
BseNI	ACTGG	1 cut(s)	115
BsePI	GCGCGC	1 cut(s)	35
BseRI	GAGGAG	1 cut(s)	21
BseSI	GKGCMC	1 cut(s)	149
BseXI	GCAGC	1 cut(s)	52
BsgI	GTGCAG	1 cut(s)	187
Bsh1236I	CGCG	2 cut(s)	37, 39
BshFI	GGCC	1 cut(s)	26
BsiHKAI	GWGCWC	1 cut(s)	149
BsiSI	CCGG	1 cut(s)	69
BslI	CCNNNNNNNGG	1 cut(s)	121
BsnI	GGCC	1 cut(s)	26
Bsp1286I	GDGCHC	1 cut(s)	149
BspANI	GGCC	1 cut(s)	26
BspCNI	CTCAG	1 cut(s)	172
BspFNI	CGCG	2 cut(s)	37, 39
BsrFI	RCCGGY	1 cut(s)	68
BsrI	ACTGG	1 cut(s)	115
BssAI	RCCGGY	1 cut(s)	68
BssHII	GCGCGC	1 cut(s)	35
Bst4CI	ACNGT	1 cut(s)	17
BstC8I	GCNNGC	4 cut(s)	37, 70, 131, 135
BstDEI	CTNAG	1 cut(s)	180
BstF5I	GGATG	1 cut(s)	190
BstFNI	CGCG	2 cut(s)	37, 39
BstHHI	GCGC	2 cut(s)	37, 39
BstMWI	GCNNNNNNNGC	1 cut(s)	32
BstNSI	RCATGY	2 cut(s)	133, 179
BstSLI	GKGCMC	1 cut(s)	149
BstUI	CGCG	2 cut(s)	37, 39
BstV1I	GCAGC	1 cut(s)	52
BsuRI	GGCC	1 cut(s)	26
BtsCI	GGATG	1 cut(s)	190
BtsIMutI	CAGTG	1 cut(s)	122
Cac8I	GCNNGC	4 cut(s)	37, 70, 131, 135
CfoI	GCGC	2 cut(s)	37, 39
Cfr10I	RCCGGY	1 cut(s)	68
CviAII	CATG	3 cut(s)	106, 130, 176
CviJI	RGCY	4 cut(s)	26, 65, 85, 104
CviKI_1	RGCY	4 cut(s)	26, 65, 85, 104
DdeI	CTNAG	1 cut(s)	180
FaeI	CATG	3 cut(s)	109, 133, 179
FaiI	YATR	4 cut(s)	107, 131, 143, 177
FatI	CATG	3 cut(s)	105, 129, 175
FblI	GTMKAC	1 cut(s)	207
Fnu4HI	GCNGC	1 cut(s)	66
FokI	GGATG	1 cut(s)	177
Fsp4HI	GCNGC	1 cut(s)	66
GlaI	GCGC	2 cut(s)	36, 38
GluI	GCNGC	1 cut(s)	66
HaeIII	GGCC	1 cut(s)	26
HapII	CCGG	1 cut(s)	69
HhaI	GCGC	2 cut(s)	37, 39
Hin1II	CATG	3 cut(s)	109, 133, 179
Hin6I	GCGC	2 cut(s)	35, 37
HinP1I	GCGC	2 cut(s)	35, 37
HpaII	CCGG	1 cut(s)	69
Hpy166II	GTNNAC	2 cut(s)	147, 208
Hpy188I	TCNGA	3 cut(s)	21, 157, 202
Hpy188III	TCNNGA	1 cut(s)	229
Hpy8I	GTNNAC	2 cut(s)	147, 208
HpyAV	CCTTC	2 cut(s)	16, 55
HpyCH4III	ACNGT	1 cut(s)	17
HpyCH4V	TGCA	4 cut(s)	129, 133, 147, 168
HpyF10VI	GCNNNNNNNGC	1 cut(s)	32
HpyF3I	CTNAG	1 cut(s)	180
Hsp92II	CATG	3 cut(s)	109, 133, 179
HspAI	GCGC	2 cut(s)	35, 37
KroI	GCCGGC	1 cut(s)	68
KroNI	GCCGGC	1 cut(s)	70
LpnPI	CCDG	3 cut(s)	82, 128, 154
Lsp1109I	GCAGC	1 cut(s)	52
LweI	GCATC	1 cut(s)	199
MboII	GAAGA	1 cut(s)	55
MhlI	GDGCHC	1 cut(s)	149
MnlI	CCTC	2 cut(s)	175, 231
MroNI	GCCGGC	1 cut(s)	68
MseI	TTAA	1 cut(s)	87
MslI	CAYNNNNRTG	1 cut(s)	142
MspI	CCGG	1 cut(s)	69
MvnI	CGCG	2 cut(s)	37, 39
MwoI	GCNNNNNNNGC	1 cut(s)	32
NaeI	GCCGGC	1 cut(s)	70
NgoMIV	GCCGGC	1 cut(s)	68
NlaIII	CATG	3 cut(s)	109, 133, 179
NspI	RCATGY	2 cut(s)	133, 179
PaeI	GCATGC	1 cut(s)	133
PauI	GCGCGC	1 cut(s)	35
PdiI	GCCGGC	1 cut(s)	70
PkrI	GCNGC	1 cut(s)	67
PteI	GCGCGC	1 cut(s)	35
RseI	CAYNNNNRTG	1 cut(s)	142
SaqAI	TTAA	1 cut(s)	87
SatI	GCNGC	1 cut(s)	66
SduI	GDGCHC	1 cut(s)	149
SetI	ASST	2 cut(s)	87, 126
SfaNI	GCATC	1 cut(s)	199
SmiMI	CAYNNNNRTG	1 cut(s)	142
SmlI	CTYRAG	1 cut(s)	227
SmoI	CTYRAG	1 cut(s)	227
SphI	GCATGC	1 cut(s)	133
TaaI	ACNGT	1 cut(s)	17
Tru1I	TTAA	1 cut(s)	87
Tru9I	TTAA	1 cut(s)	87
TscAI	CASTG	1 cut(s)	122
TseI	GCWGC	1 cut(s)	65
TspRI	CASTG	1 cut(s)	122
VneI	GTGCAC	1 cut(s)	145
XceI	RCATGY	2 cut(s)	133, 179
XmiI	GTMKAC	1 cut(s)	207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.