Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002560.1

Orthogroup ID

OG0003340

Physical Location & Seq

Genomic Coordinates Forward (+)

9618 .. 11205

Gene Structure 1588 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002560.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

atgggaggaggcaacggacagaaggccaagatggcacgcgagaggaacatggagaagcaaaaggccgcaaagggtagccagcttgagaccaacaagaaggccatgtccatccagtgcaaggtgtgcatgcagacatttatatgtaccaccacagaggtgaagtgtcgagaacatgcagaagcaaagcaccccaaggccgatgtctttatgtgtttcccgcatctcaaaaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

4F5 zf-met2

Protein Analysis

77

Amino Acids

8.66

Weight (kDa)

9.64

Isoelectric Point (pI)

36.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003340)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23090
fragaria_vesca	FvH4_1g17240 FvH4_2g33310
malus_domestica	MD08G1087600.v1.1 MD15G1072500.v1.1 MD15G1293500.v1.1
prunus_persica	Prupe.1G425100_v2.0.a1 Prupe.6G224000_v2.0.a1 Prupe.6G224000_v2.0.a1 Prupe.6G224000_v2.0.a1 Prupe.8G140800_v2.0.a1
pyrus_communis	pycom02g14770 pycom15g06780
rosa_chinensis	RchiOBHm_Chr2g0107431 RchiOBHm_Chr6g0252981 RchiOBHm_Chr6g0309311
rosa_multiflora	Rmu_sc0002560.1_g000004 Rmu_sc0007504.1_g000005 Rmu_sc0015692.1_g000003 Rmu_sc0025013.1_g000004 Rmu_sc0029870.1_g000001
rosa_roxburghii	Rroxscaffold_2G00136350 Rroxscaffold_7G00159500 Rroxscaffold_7G00212250
rosa_rugosa	Rorug02G0143500 Rorug02G0143500 Rorug06G0370800 Rorug06G0370800 Rorug06G0370900
rosa_samantha	Rh2AG193700 Rh2CG198900 Rh6AG484300 Rh6BG493400 Rh6CG498400 Rh6DG484900
rosa_wichuraiana	Rw2G015340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	39
AciI	CCGC	2 cut(s)	66, 218
AfaI	GTAC	1 cut(s)	145
AfiI	CCNNNNNNNGG	1 cut(s)	118
AleI	CACNNNNGTG	1 cut(s)	155
AluBI	AGCT	1 cut(s)	82
AluI	AGCT	1 cut(s)	82
Alw26I	GTCTC	1 cut(s)	80
AoxI	GGCC	4 cut(s)	24, 63, 99, 195
AsuHPI	GGTGA	1 cut(s)	169
BccI	CCATC	2 cut(s)	25, 116
BcoDI	GTCTC	1 cut(s)	80
BglI	GCCNNNNNGGC	1 cut(s)	32
BisI	GCNGC	1 cut(s)	66
BlsI	GCNGC	1 cut(s)	67
BmsI	GCATC	1 cut(s)	229
BpuEI	CTTGAG	1 cut(s)	104
BsaI	GGTCTC	1 cut(s)	80
BsaJI	CCNNGG	1 cut(s)	192
Bsc4I	CCNNNNNNNGG	1 cut(s)	118
Bse1I	ACTGG	1 cut(s)	112
BseDI	CCNNGG	1 cut(s)	192
BseGI	GGATG	1 cut(s)	108
BseLI	CCNNNNNNNGG	1 cut(s)	118
BseNI	ACTGG	1 cut(s)	112
BseRI	GAGGAG	1 cut(s)	21
Bsh1236I	CGCG	1 cut(s)	39
BshFI	GGCC	4 cut(s)	26, 65, 101, 197
BslI	CCNNNNNNNGG	1 cut(s)	118
BsmAI	GTCTC	1 cut(s)	80
BsnI	GGCC	4 cut(s)	26, 65, 101, 197
Bso31I	GGTCTC	1 cut(s)	80
BspACI	CCGC	2 cut(s)	66, 218
BspANI	GGCC	4 cut(s)	26, 65, 101, 197
BspFNI	CGCG	1 cut(s)	39
BspTNI	GGTCTC	1 cut(s)	80
BsrI	ACTGG	1 cut(s)	112
BssECI	CCNNGG	1 cut(s)	192
BssT1I	CCWWGG	1 cut(s)	192
BstAPI	GCANNNNNTGC	1 cut(s)	123
BstC8I	GCNNGC	3 cut(s)	37, 80, 128
BstF5I	GGATG	1 cut(s)	108
BstFNI	CGCG	1 cut(s)	39
BstMAI	GTCTC	1 cut(s)	80
BstMWI	GCNNNNNNNGC	2 cut(s)	32, 123
BstNSI	RCATGY	2 cut(s)	130, 176
BstUI	CGCG	1 cut(s)	39
BsuRI	GGCC	4 cut(s)	26, 65, 101, 197
BtsCI	GGATG	1 cut(s)	108
BtsIMutI	CAGTG	1 cut(s)	119
Cac8I	GCNNGC	3 cut(s)	37, 80, 128
Csp6I	GTAC	1 cut(s)	144
CviAII	CATG	4 cut(s)	49, 103, 127, 173
CviJI	RGCY	6 cut(s)	26, 65, 78, 82, 101, 197
CviKI_1	RGCY	6 cut(s)	26, 65, 78, 82, 101, 197
CviQI	GTAC	1 cut(s)	144
Eco130I	CCWWGG	1 cut(s)	192
Eco31I	GGTCTC	1 cut(s)	80
EcoT14I	CCWWGG	1 cut(s)	192
ErhI	CCWWGG	1 cut(s)	192
FaeI	CATG	4 cut(s)	52, 106, 130, 176
FaiI	YATR	7 cut(s)	50, 104, 128, 140, 142, 174, 209
FatI	CATG	4 cut(s)	48, 102, 126, 172
FauI	CCCGC	1 cut(s)	225
Fnu4HI	GCNGC	1 cut(s)	66
FokI	GGATG	1 cut(s)	95
Fsp4HI	GCNGC	1 cut(s)	66
GluI	GCNGC	1 cut(s)	66
HaeIII	GGCC	4 cut(s)	26, 65, 101, 197
Hin1II	CATG	4 cut(s)	52, 106, 130, 176
HphI	GGTGA	1 cut(s)	169
Hpy188III	TCNNGA	1 cut(s)	167
HpyAV	CCTTC	2 cut(s)	16, 91
HpyCH4V	TGCA	4 cut(s)	117, 126, 130, 176
HpyF10VI	GCNNNNNNNGC	2 cut(s)	32, 123
Hsp92II	CATG	4 cut(s)	52, 106, 130, 176
LpnPI	CCDG	2 cut(s)	92, 125
LweI	GCATC	1 cut(s)	229
MnlI	CCTC	2 cut(s)	36, 148
MslI	CAYNNNNRTG	2 cut(s)	139, 155
MvnI	CGCG	1 cut(s)	39
MwoI	GCNNNNNNNGC	2 cut(s)	32, 123
NlaIII	CATG	4 cut(s)	52, 106, 130, 176
NspI	RCATGY	2 cut(s)	130, 176
OliI	CACNNNNGTG	1 cut(s)	155
PaeI	GCATGC	1 cut(s)	130
PkrI	GCNGC	1 cut(s)	67
RsaI	GTAC	1 cut(s)	145
RsaNI	GTAC	1 cut(s)	144
RseI	CAYNNNNRTG	2 cut(s)	139, 155
SatI	GCNGC	1 cut(s)	66
SetI	ASST	3 cut(s)	84, 123, 159
SfaNI	GCATC	1 cut(s)	229
SmiMI	CAYNNNNRTG	2 cut(s)	139, 155
SmlI	CTYRAG	1 cut(s)	83
SmoI	CTYRAG	1 cut(s)	83
SphI	GCATGC	1 cut(s)	130
SsiI	CCGC	2 cut(s)	66, 218
StyI	CCWWGG	1 cut(s)	192
TaqI	TCGA	1 cut(s)	166
TauI	GCSGC	1 cut(s)	68
TscAI	CASTG	1 cut(s)	119
TspGWI	ACGGA	1 cut(s)	30
TspRI	CASTG	1 cut(s)	119
XceI	RCATGY	2 cut(s)	130, 176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.