Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0003340

Physical Location & Seq

Genomic Coordinates Forward (+)

11380730 .. 11381903

Gene Structure 1174 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g14770.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

ATGGGAGGAGGCAATGGTCAGAAGGCCAAGATGGCCCGCGAGAAGAACTTGGAGAAGCAGAAAGCTGCCGGCAAGGGAAGTCAGCTTAAAACAAACGAGAAAGCCATGTCAATCCAGTGTAAGGTGTGTATGCAAGCATTTATGTGCACCACATCGGAAGTGAAATGCAGGGAGCATGCTGAGGCAAAGCATCCCAAGTCTGATGTCTACGCTTGTTTCCCTCATCTCAAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

4F5 zf-met2

Protein Analysis

79

Amino Acids

8.62

Weight (kDa)

9.57

Isoelectric Point (pI)

36.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003340)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23090
fragaria_vesca	FvH4_1g17240 FvH4_2g33310
malus_domestica	MD08G1087600.v1.1 MD15G1072500.v1.1 MD15G1293500.v1.1
prunus_persica	Prupe.1G425100_v2.0.a1 Prupe.6G224000_v2.0.a1 Prupe.6G224000_v2.0.a1 Prupe.6G224000_v2.0.a1 Prupe.8G140800_v2.0.a1
pyrus_communis	pycom02g14770 pycom15g06780
rosa_chinensis	RchiOBHm_Chr2g0107431 RchiOBHm_Chr6g0252981 RchiOBHm_Chr6g0309311
rosa_multiflora	Rmu_sc0002560.1_g000004 Rmu_sc0007504.1_g000005 Rmu_sc0015692.1_g000003 Rmu_sc0025013.1_g000004 Rmu_sc0029870.1_g000001
rosa_roxburghii	Rroxscaffold_2G00136350 Rroxscaffold_7G00159500 Rroxscaffold_7G00212250
rosa_rugosa	Rorug02G0143500 Rorug02G0143500 Rorug06G0370800 Rorug06G0370800 Rorug06G0370900
rosa_samantha	Rh2AG193700 Rh2CG198900 Rh6AG484300 Rh6BG493400 Rh6CG498400 Rh6DG484900
rosa_wichuraiana	Rw2G015340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	207
AccII	CGCG	1 cut(s)	39
AciI	CCGC	1 cut(s)	37
AfiI	CCNNNNNNNGG	1 cut(s)	121
AluBI	AGCT	2 cut(s)	65, 85
AluI	AGCT	2 cut(s)	65, 85
Alw21I	GWGCWC	1 cut(s)	149
Alw44I	GTGCAC	1 cut(s)	145
AoxI	GGCC	2 cut(s)	24, 33
ApaLI	GTGCAC	1 cut(s)	145
ApeKI	GCWGC	1 cut(s)	65
AspS9I	GGNCC	1 cut(s)	34
BaeGI	GKGCMC	1 cut(s)	149
Bbv12I	GWGCWC	1 cut(s)	149
BbvCI	CCTCAGC	1 cut(s)	180
BbvI	GCAGC	1 cut(s)	52
BccI	CCATC	1 cut(s)	25
BglI	GCCNNNNNGGC	1 cut(s)	32
BisI	GCNGC	1 cut(s)	66
BlsI	GCNGC	1 cut(s)	67
BmgT120I	GGNCC	1 cut(s)	34
BmsI	GCATC	1 cut(s)	199
Bpu10I	CCTNAGC	1 cut(s)	180
BpuEI	CTTGAG	1 cut(s)	212
Bsc4I	CCNNNNNNNGG	1 cut(s)	121
Bse118I	RCCGGY	1 cut(s)	68
Bse1I	ACTGG	1 cut(s)	115
Bse3DI	GCAATG	1 cut(s)	19
BseGI	GGATG	1 cut(s)	190
BseLI	CCNNNNNNNGG	1 cut(s)	121
BseMI	GCAATG	1 cut(s)	19
BseMII	CTCAG	1 cut(s)	171
BseNI	ACTGG	1 cut(s)	115
BseRI	GAGGAG	1 cut(s)	21
BseSI	GKGCMC	1 cut(s)	149
BseXI	GCAGC	1 cut(s)	52
Bsh1236I	CGCG	1 cut(s)	39
BshFI	GGCC	2 cut(s)	26, 35
BsiHKAI	GWGCWC	1 cut(s)	149
BsiSI	CCGG	1 cut(s)	69
BslI	CCNNNNNNNGG	1 cut(s)	121
BsnI	GGCC	2 cut(s)	26, 35
Bsp1286I	GDGCHC	1 cut(s)	149
BspACI	CCGC	1 cut(s)	37
BspANI	GGCC	2 cut(s)	26, 35
BspCNI	CTCAG	1 cut(s)	172
BspFNI	CGCG	1 cut(s)	39
BsrDI	GCAATG	1 cut(s)	19
BsrFI	RCCGGY	1 cut(s)	68
BsrI	ACTGG	1 cut(s)	115
BssAI	RCCGGY	1 cut(s)	68
BstC8I	GCNNGC	4 cut(s)	37, 70, 135, 177
BstDEI	CTNAG	1 cut(s)	180
BstF5I	GGATG	1 cut(s)	190
BstFNI	CGCG	1 cut(s)	39
BstMWI	GCNNNNNNNGC	1 cut(s)	32
BstNSI	RCATGY	1 cut(s)	179
BstSLI	GKGCMC	1 cut(s)	149
BstUI	CGCG	1 cut(s)	39
BstV1I	GCAGC	1 cut(s)	52
BsuRI	GGCC	2 cut(s)	26, 35
BtsCI	GGATG	1 cut(s)	190
BtsIMutI	CAGTG	1 cut(s)	122
Cac8I	GCNNGC	4 cut(s)	37, 70, 135, 177
Cfr10I	RCCGGY	1 cut(s)	68
Cfr13I	GGNCC	1 cut(s)	34
CviAII	CATG	2 cut(s)	106, 176
CviJI	RGCY	5 cut(s)	26, 35, 65, 85, 104
CviKI_1	RGCY	5 cut(s)	26, 35, 65, 85, 104
DdeI	CTNAG	1 cut(s)	180
FaeI	CATG	2 cut(s)	109, 179
FaiI	YATR	4 cut(s)	107, 131, 143, 177
FatI	CATG	2 cut(s)	105, 175
FauI	CCCGC	1 cut(s)	44
FblI	GTMKAC	1 cut(s)	207
Fnu4HI	GCNGC	1 cut(s)	66
FokI	GGATG	1 cut(s)	177
Fsp4HI	GCNGC	1 cut(s)	66
GluI	GCNGC	1 cut(s)	66
HaeIII	GGCC	2 cut(s)	26, 35
HapII	CCGG	1 cut(s)	69
Hin1II	CATG	2 cut(s)	109, 179
HpaII	CCGG	1 cut(s)	69
Hpy166II	GTNNAC	2 cut(s)	147, 208
Hpy188I	TCNGA	3 cut(s)	21, 157, 202
Hpy188III	TCNNGA	1 cut(s)	229
Hpy8I	GTNNAC	2 cut(s)	147, 208
HpyAV	CCTTC	1 cut(s)	16
HpyCH4V	TGCA	3 cut(s)	133, 147, 168
HpyF10VI	GCNNNNNNNGC	1 cut(s)	32
HpyF3I	CTNAG	1 cut(s)	180
Hsp92II	CATG	2 cut(s)	109, 179
KroI	GCCGGC	1 cut(s)	68
KroNI	GCCGGC	1 cut(s)	70
LmnI	GCTCC	1 cut(s)	172
LpnPI	CCDG	3 cut(s)	82, 128, 154
Lsp1109I	GCAGC	1 cut(s)	52
LweI	GCATC	1 cut(s)	199
MboII	GAAGA	1 cut(s)	55
MhlI	GDGCHC	1 cut(s)	149
MnlI	CCTC	2 cut(s)	175, 231
MroNI	GCCGGC	1 cut(s)	68
MseI	TTAA	1 cut(s)	87
MslI	CAYNNNNRTG	1 cut(s)	142
MspI	CCGG	1 cut(s)	69
MvnI	CGCG	1 cut(s)	39
MwoI	GCNNNNNNNGC	1 cut(s)	32
NaeI	GCCGGC	1 cut(s)	70
NgoMIV	GCCGGC	1 cut(s)	68
NlaIII	CATG	2 cut(s)	109, 179
NspI	RCATGY	1 cut(s)	179
PaeI	GCATGC	1 cut(s)	179
PdiI	GCCGGC	1 cut(s)	70
PkrI	GCNGC	1 cut(s)	67
PspPI	GGNCC	1 cut(s)	34
RseI	CAYNNNNRTG	1 cut(s)	142
SaqAI	TTAA	1 cut(s)	87
SatI	GCNGC	1 cut(s)	66
Sau96I	GGNCC	1 cut(s)	34
SduI	GDGCHC	1 cut(s)	149
SetI	ASST	3 cut(s)	67, 87, 126
SfaNI	GCATC	1 cut(s)	199
SfiI	GGCCNNNNNGGCC	1 cut(s)	32
SmiMI	CAYNNNNRTG	1 cut(s)	142
SmlI	CTYRAG	1 cut(s)	227
SmoI	CTYRAG	1 cut(s)	227
SphI	GCATGC	1 cut(s)	179
SsiI	CCGC	1 cut(s)	37
Tru1I	TTAA	1 cut(s)	87
Tru9I	TTAA	1 cut(s)	87
TscAI	CASTG	1 cut(s)	122
TseI	GCWGC	1 cut(s)	65
TspRI	CASTG	1 cut(s)	122
VneI	GTGCAC	1 cut(s)	145
XceI	RCATGY	1 cut(s)	179
XmiI	GTMKAC	1 cut(s)	207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.