Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0025013.1

Orthogroup ID

OG0003340

Physical Location & Seq

Genomic Coordinates Reverse (-)

18708 .. 19496

Gene Structure 789 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0025013.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

atgggaggaggcaacggtcagaaggccaagatggcgcgcgagaagaacttggagaagcaaaaagccgctggaaagggaagccagcttgaaaaaaacaagaaagccatgtcaatccagtgcaaggtgtgtatgcaaacattcatgtgcactacctcggaggtgaagtgcagggagcatgctgaagcaaagcatccgaagtctgatgtgtatgcctgtttccctcatctcaagccgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

4F5 zf-met2

Protein Analysis

78

Amino Acids

8.64

Weight (kDa)

9.57

Isoelectric Point (pI)

43.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003340)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23090
fragaria_vesca	FvH4_1g17240 FvH4_2g33310
malus_domestica	MD08G1087600.v1.1 MD15G1072500.v1.1 MD15G1293500.v1.1
prunus_persica	Prupe.1G425100_v2.0.a1 Prupe.6G224000_v2.0.a1 Prupe.6G224000_v2.0.a1 Prupe.6G224000_v2.0.a1 Prupe.8G140800_v2.0.a1
pyrus_communis	pycom02g14770 pycom15g06780
rosa_chinensis	RchiOBHm_Chr2g0107431 RchiOBHm_Chr6g0252981 RchiOBHm_Chr6g0309311
rosa_multiflora	Rmu_sc0002560.1_g000004 Rmu_sc0007504.1_g000005 Rmu_sc0015692.1_g000003 Rmu_sc0025013.1_g000004 Rmu_sc0029870.1_g000001
rosa_roxburghii	Rroxscaffold_2G00136350 Rroxscaffold_7G00159500 Rroxscaffold_7G00212250
rosa_rugosa	Rorug02G0143500 Rorug02G0143500 Rorug06G0370800 Rorug06G0370800 Rorug06G0370900
rosa_samantha	Rh2AG193700 Rh2CG198900 Rh6AG484300 Rh6BG493400 Rh6CG498400 Rh6DG484900
rosa_wichuraiana	Rw2G015340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	37, 39
AciI	CCGC	1 cut(s)	66
AcuI	CTGAAG	1 cut(s)	201
AfiI	CCNNNNNNNGG	1 cut(s)	121
AgsI	TTSAA	1 cut(s)	89
AluBI	AGCT	1 cut(s)	85
AluI	AGCT	1 cut(s)	85
Alw21I	GWGCWC	1 cut(s)	149
Alw44I	GTGCAC	1 cut(s)	145
AoxI	GGCC	1 cut(s)	24
ApaLI	GTGCAC	1 cut(s)	145
AspLEI	GCGC	2 cut(s)	37, 39
AsuHPI	GGTGA	1 cut(s)	172
BaeGI	GKGCMC	1 cut(s)	149
Bbv12I	GWGCWC	1 cut(s)	149
BccI	CCATC	1 cut(s)	25
BceAI	ACGGC	1 cut(s)	217
BglI	GCCNNNNNGGC	1 cut(s)	32
BisI	GCNGC	1 cut(s)	66
BlsI	GCNGC	1 cut(s)	67
BmsI	GCATC	1 cut(s)	199
BpuEI	CTTGAG	1 cut(s)	212
BsaJI	CCNNGG	1 cut(s)	153
BsaXI	ACNNNNNCTCC	2 cut(s)	149, 179
Bsc4I	CCNNNNNNNGG	1 cut(s)	121
Bse1I	ACTGG	1 cut(s)	115
BseDI	CCNNGG	1 cut(s)	153
BseGI	GGATG	1 cut(s)	190
BseLI	CCNNNNNNNGG	1 cut(s)	121
BseNI	ACTGG	1 cut(s)	115
BsePI	GCGCGC	1 cut(s)	35
BseRI	GAGGAG	1 cut(s)	21
BseSI	GKGCMC	1 cut(s)	149
BsgI	GTGCAG	1 cut(s)	187
Bsh1236I	CGCG	2 cut(s)	37, 39
BshFI	GGCC	1 cut(s)	26
BsiHKAI	GWGCWC	1 cut(s)	149
BslI	CCNNNNNNNGG	1 cut(s)	121
BsnI	GGCC	1 cut(s)	26
Bsp1286I	GDGCHC	1 cut(s)	149
BspACI	CCGC	1 cut(s)	66
BspANI	GGCC	1 cut(s)	26
BspFNI	CGCG	2 cut(s)	37, 39
BsrI	ACTGG	1 cut(s)	115
BssECI	CCNNGG	1 cut(s)	153
BssHII	GCGCGC	1 cut(s)	35
Bst4CI	ACNGT	1 cut(s)	17
BstC8I	GCNNGC	3 cut(s)	37, 83, 177
BstF5I	GGATG	1 cut(s)	190
BstFNI	CGCG	2 cut(s)	37, 39
BstHHI	GCGC	2 cut(s)	37, 39
BstMWI	GCNNNNNNNGC	1 cut(s)	32
BstNSI	RCATGY	1 cut(s)	179
BstSLI	GKGCMC	1 cut(s)	149
BstUI	CGCG	2 cut(s)	37, 39
BsuRI	GGCC	1 cut(s)	26
BtsCI	GGATG	1 cut(s)	190
BtsIMutI	CAGTG	1 cut(s)	122
Cac8I	GCNNGC	3 cut(s)	37, 83, 177
CfoI	GCGC	2 cut(s)	37, 39
CviAII	CATG	3 cut(s)	106, 142, 176
CviJI	RGCY	6 cut(s)	26, 65, 81, 85, 104, 232
CviKI_1	RGCY	6 cut(s)	26, 65, 81, 85, 104, 232
Eco57I	CTGAAG	1 cut(s)	201
FaeI	CATG	3 cut(s)	109, 145, 179
FaiI	YATR	5 cut(s)	107, 131, 143, 177, 210
FatI	CATG	3 cut(s)	105, 141, 175
Fnu4HI	GCNGC	1 cut(s)	66
FokI	GGATG	1 cut(s)	177
Fsp4HI	GCNGC	1 cut(s)	66
GlaI	GCGC	2 cut(s)	36, 38
GluI	GCNGC	1 cut(s)	66
HaeIII	GGCC	1 cut(s)	26
HhaI	GCGC	2 cut(s)	37, 39
Hin1II	CATG	3 cut(s)	109, 145, 179
Hin6I	GCGC	2 cut(s)	35, 37
HinP1I	GCGC	2 cut(s)	35, 37
HphI	GGTGA	1 cut(s)	172
Hpy166II	GTNNAC	1 cut(s)	147
Hpy188I	TCNGA	4 cut(s)	21, 157, 195, 202
Hpy8I	GTNNAC	1 cut(s)	147
HpyAV	CCTTC	1 cut(s)	16
HpyCH4III	ACNGT	1 cut(s)	17
HpyCH4V	TGCA	4 cut(s)	120, 133, 147, 168
HpyF10VI	GCNNNNNNNGC	1 cut(s)	32
Hsp92II	CATG	3 cut(s)	109, 145, 179
HspAI	GCGC	2 cut(s)	35, 37
LmnI	GCTCC	1 cut(s)	172
LpnPI	CCDG	5 cut(s)	54, 95, 128, 154, 226
LweI	GCATC	1 cut(s)	199
MboII	GAAGA	1 cut(s)	55
MhlI	GDGCHC	1 cut(s)	149
MnlI	CCTC	3 cut(s)	151, 163, 231
MslI	CAYNNNNRTG	1 cut(s)	142
MspA1I	CMGCKG	1 cut(s)	68
MvnI	CGCG	2 cut(s)	37, 39
MwoI	GCNNNNNNNGC	1 cut(s)	32
NlaIII	CATG	3 cut(s)	109, 145, 179
NspI	RCATGY	1 cut(s)	179
PaeI	GCATGC	1 cut(s)	179
PauI	GCGCGC	1 cut(s)	35
PkrI	GCNGC	1 cut(s)	67
PteI	GCGCGC	1 cut(s)	35
RseI	CAYNNNNRTG	1 cut(s)	142
SatI	GCNGC	1 cut(s)	66
SduI	GDGCHC	1 cut(s)	149
SetI	ASST	4 cut(s)	87, 126, 155, 162
SfaNI	GCATC	1 cut(s)	199
SmiMI	CAYNNNNRTG	1 cut(s)	142
SmlI	CTYRAG	1 cut(s)	227
SmoI	CTYRAG	1 cut(s)	227
SphI	GCATGC	1 cut(s)	179
SsiI	CCGC	1 cut(s)	66
TaaI	ACNGT	1 cut(s)	17
TauI	GCSGC	1 cut(s)	68
TscAI	CASTG	1 cut(s)	122
TspDTI	ATGAA	1 cut(s)	130
TspRI	CASTG	1 cut(s)	122
VneI	GTGCAC	1 cut(s)	145
XceI	RCATGY	1 cut(s)	179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.