FvH4_1g18690

Malate dehydrogenase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Forward (+)
10992665 .. 10997578
4914 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g18690.t3

Sequence Viewer

Length: 1074 bp
ATGACACAGTCGAGCTCAGATGCCACTCAACGCATTGCTCGAATCTCCGCCCATCTCGACCCCCAAAATCTCCAGATGGACGATGCCGGAGCTCTCCGGCGACTGAGCTGCCGCGCCAAGGGTGGCGCGTCGGGCTTCAAAGTCGCGATTCTCGGCGCGGCCGGCGGTATAGGCCAGCCTCTGGCTTTGCTGATGAAGATGAACCCTCTCGTCTCCGTCCTCCATCTATACGACGTCGTTAACACCCCCGGCGTCACCTCTGACGTCAGCCACATGGACACCGGCGCCGTGGTGCGAGGGTTTCTAGGGCAGCAGCAGCTGGAGGAGGCTCTGACCGGAATGGAGCTGGTGATAATTCCGGCCGGTGTGCCTCGGAAACCGGGGATGACTAGGGATGATTTGTTTAACATCAATGCCGGAATTGTGAGGACGCTTTGTGAAGGAATTGCAAAGTGTTGTCCTAATGCTGTGGTTAACCTGATCAGCAATCCGGTGAACTCTACGGTTCCTATTGCTGCTGAGGTGTTCAAGAAAGCCGGGACTTTCGACCCGAAGCGGCTTTTGGGGGTTACTATGCTTGATGTTGTTAGGGCCAATACTTTTGTGGCAGAGGTTCTGGGACTTGATCCTAGGGAAGTTGATGTTCCTGTTGTTGGTGGTCATGCAGGGGTTACCATTTTGCCACTTCTGTCTCAGGTTAAACCCCCATGCTCTTTCACCCCGAAGGAAGTTGATTATCTAACTGATCGCATTCAGAATGGTGGAACTGAGGTTGTTGAGGCAAAAGCTGGAGCTGGTTCTGCAACATTATCAATGGCATATGCTGCTGTTAAATTTGCGGATGCATGCCTTCGTGGCTTAAGAGGGGATGCAGGTGTTGTTGAATGTGCATATGTCGCTTCTCAGGTGACTGAACTTCCCTTCTTTGCATCCAAAGTACGGCTTGGCCGTACTGGAGTTGAGGAAATACACCCCCTTGGCCCCCTGAATGAGTATGAGAGGGCTGGCTTGGAGAAGGCAAAGAAAGAACTAGCAACAAGTATACAGAAGGGGGTTTCTTTCATCAGAAAATGA

Protein Analysis

358

Amino Acids

37.64

Weight (kDa)

8.12

Isoelectric Point (pI)

28.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ldh_1_N PF00056 47 - 189 3.8e-46 lactate/malate dehydrogenase, NAD binding domain
Ldh_1_C PF02866 191 - 354 9.3e-46 lactate/malate dehydrogenase, alpha/beta C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0014980)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 863
AatII GACGTC 2 cut(s) 237, 267
Acc36I ACCTGC 1 cut(s) 863
AccB1I GGYRCC 1 cut(s) 284
AccB7I CCANNNNNTGG 1 cut(s) 181
AccI GTMKAC 1 cut(s) 1042
AccII CGCG 4 cut(s) 114, 128, 146, 158
AciI CCGC 6 cut(s) 48, 112, 158, 165, 556, 839
AclWI GGATC 1 cut(s) 620
AcoI YGGCCR 3 cut(s) 159, 360, 946
AcsI RAATTY 1 cut(s) 833
AcyI GRCGYC 4 cut(s) 234, 252, 264, 285
AfaI GTAC 2 cut(s) 939, 952
AfiI CCNNNNNNNGG 4 cut(s) 118, 181, 653, 939
AflII CTTAAG 1 cut(s) 859
AgsI TTSAA 3 cut(s) 139, 529, 884
AjuI GAANNNNNNNTTGG 2 cut(s) 545, 577
AluBI AGCT 7 cut(s) 15, 92, 108, 319, 346, 788, 794
AluI AGCT 7 cut(s) 15, 92, 108, 319, 346, 788, 794
Alw21I GWGCWC 2 cut(s) 17, 94
Alw26I GTCTC 2 cut(s) 217, 696
AlwI GGATC 1 cut(s) 620
AlwNI CAGNNNCTG 2 cut(s) 181, 319
AoxI GGCC 6 cut(s) 159, 172, 360, 591, 946, 979
ApeKI GCWGC 6 cut(s) 108, 310, 313, 316, 515, 824
ApoI RAATTY 1 cut(s) 833
AspA2I CCTAGG 1 cut(s) 629
AspLEI GCGC 4 cut(s) 116, 128, 158, 287
AspS9I GGNCC 2 cut(s) 591, 980
AsuC2I CCSGG 3 cut(s) 249, 381, 538
AsuHPI GGTGA 5 cut(s) 247, 361, 505, 709, 919
AvrII CCTAGG 1 cut(s) 629
BanI GGYRCC 1 cut(s) 284
BanII GRGCYC 2 cut(s) 17, 94
Bbv12I GWGCWC 2 cut(s) 17, 94
BbvCI CCTCAGC 1 cut(s) 519
BbvI GCAGC 6 cut(s) 95, 322, 325, 328, 502, 811
BccI CCATC 3 cut(s) 60, 70, 231
BceAI ACGGC 3 cut(s) 272, 933, 956
BcgI CGANNNNNNTGC 2 cut(s) 90, 124
BclI TGATCA 1 cut(s) 480
BcnI CCSGG 3 cut(s) 249, 381, 538
BcoDI GTCTC 2 cut(s) 217, 696
BfaI CTAG 4 cut(s) 305, 390, 630, 1031
BfoI RGCGCY 1 cut(s) 288
BfrI CTTAAG 1 cut(s) 859
BfuAI ACCTGC 1 cut(s) 863
BglI GCCNNNNNGGC 1 cut(s) 855
BisI GCNGC 9 cut(s) 109, 112, 159, 311, 314, 317, 516, 557, 825
BlnI CCTAGG 1 cut(s) 629
BlsI GCNGC 9 cut(s) 110, 113, 160, 312, 315, 318, 517, 558, 826
Bme1390I CCNGG 3 cut(s) 249, 381, 538
BmgT120I GGNCC 2 cut(s) 591, 980
BmiI GGNNCC 3 cut(s) 286, 507, 982
BmrFI CCNGG 3 cut(s) 249, 381, 538
BmsI GCATC 5 cut(s) 10, 73, 832, 859, 938
BpmI CTGGAG 4 cut(s) 56, 341, 810, 975
Bpu10I CCTNAGC 1 cut(s) 519
BpuMI CCSGG 3 cut(s) 249, 381, 538
BsaHI GRCGYC 4 cut(s) 234, 252, 264, 285
BsaJI CCNNGG 7 cut(s) 117, 247, 288, 371, 380, 629, 976
BsaWI WCCGGW 2 cut(s) 335, 490
Bsc4I CCNNNNNNNGG 4 cut(s) 118, 181, 653, 939
Bse118I RCCGGY 3 cut(s) 161, 281, 362
Bse1I ACTGG 1 cut(s) 958
Bse3DI GCAATG 1 cut(s) 33
BseDI CCNNGG 7 cut(s) 117, 247, 288, 371, 380, 629, 976
BseGI GGATG 5 cut(s) 390, 400, 847, 874, 929
BseLI CCNNNNNNNGG 4 cut(s) 118, 181, 653, 939
BseMI GCAATG 1 cut(s) 33
BseMII CTCAG 6 cut(s) 30, 95, 510, 707, 759, 917
BseNI ACTGG 1 cut(s) 958
BseRI GAGGAG 1 cut(s) 338
BseX3I CGGCCG 2 cut(s) 159, 360
BseXI GCAGC 6 cut(s) 95, 322, 325, 328, 502, 811
Bsh1236I CGCG 4 cut(s) 114, 128, 146, 158
Bsh1285I CGRYCG 2 cut(s) 162, 363
BshFI GGCC 6 cut(s) 161, 174, 362, 593, 948, 981
BshNI GGYRCC 1 cut(s) 284
BsiEI CGRYCG 2 cut(s) 162, 363
BsiHKAI GWGCWC 2 cut(s) 17, 94
BslFI GGGAC 2 cut(s) 553, 633
BslI CCNNNNNNNGG 4 cut(s) 118, 181, 653, 939
BsmAI GTCTC 2 cut(s) 217, 696
BsmBI CGTCTC 1 cut(s) 217
BsmFI GGGAC 2 cut(s) 553, 633
BsmI GAATGC 1 cut(s) 750
BsnI GGCC 6 cut(s) 161, 174, 362, 593, 948, 981
Bsp1286I GDGCHC 2 cut(s) 17, 94
Bsp143I GATC 3 cut(s) 480, 625, 745
Bsp68I TCGCGA 1 cut(s) 146
BspACI CCGC 6 cut(s) 48, 112, 158, 165, 556, 839
BspANI GGCC 6 cut(s) 161, 174, 362, 593, 948, 981
BspCNI CTCAG 6 cut(s) 29, 96, 511, 706, 760, 916
BspFNI CGCG 4 cut(s) 114, 128, 146, 158
BspLI GGNNCC 3 cut(s) 286, 507, 982
BspMI ACCTGC 1 cut(s) 863
BspPI GGATC 1 cut(s) 620
BspT107I GGYRCC 1 cut(s) 284
BspTI CTTAAG 1 cut(s) 859
BsrDI GCAATG 1 cut(s) 33
BsrFI RCCGGY 3 cut(s) 161, 281, 362
BsrI ACTGG 1 cut(s) 958
BssAI RCCGGY 3 cut(s) 161, 281, 362
BssECI CCNNGG 7 cut(s) 117, 247, 288, 371, 380, 629, 976
BssMI GATC 3 cut(s) 480, 625, 745
BssNAI GTATAC 1 cut(s) 1043
BssNI GRCGYC 4 cut(s) 234, 252, 264, 285
BssT1I CCWWGG 3 cut(s) 117, 629, 976
Bst1107I GTATAC 1 cut(s) 1043
Bst4CI ACNGT 2 cut(s) 9, 505
BstACI GRCGYC 4 cut(s) 234, 252, 264, 285
BstAFI CTTAAG 1 cut(s) 859
BstAPI GCANNNNNTGC 1 cut(s) 824
BstC8I GCNNGC 4 cut(s) 163, 176, 847, 1006
BstDEI CTNAG 6 cut(s) 16, 104, 519, 693, 768, 903
BstDSI CCRYGG 1 cut(s) 288
BstEII GGTNACC 1 cut(s) 670
BstF5I GGATG 5 cut(s) 390, 400, 847, 874, 929
BstFNI CGCG 4 cut(s) 114, 128, 146, 158
BstH2I RGCGCY 1 cut(s) 288
BstHHI GCGC 4 cut(s) 116, 128, 158, 287
BstKTI GATC 3 cut(s) 483, 628, 748
BstMAI GTCTC 2 cut(s) 217, 696
BstMBI GATC 3 cut(s) 480, 625, 745
BstMCI CGRYCG 2 cut(s) 162, 363
BstMWI GCNNNNNNNGC 8 cut(s) 132, 162, 171, 316, 800, 824, 855, 896
BstNSI RCATGY 1 cut(s) 849
BstPI GGTNACC 1 cut(s) 670
BstSCI CCNGG 3 cut(s) 247, 379, 536
BstUI CGCG 4 cut(s) 114, 128, 146, 158
BstV1I GCAGC 6 cut(s) 95, 322, 325, 328, 502, 811
BstZ17I GTATAC 1 cut(s) 1043
BstZI CGGCCG 2 cut(s) 159, 360
BsuRI GGCC 6 cut(s) 161, 174, 362, 593, 948, 981
BtgI CCRYGG 1 cut(s) 288
BtsCI GGATG 5 cut(s) 390, 400, 847, 874, 929
BtuMI TCGCGA 1 cut(s) 146
BveI ACCTGC 1 cut(s) 863
Cac8I GCNNGC 4 cut(s) 163, 176, 847, 1006
CaiI CAGNNNCTG 2 cut(s) 181, 319
CfoI GCGC 4 cut(s) 116, 128, 158, 287
Cfr10I RCCGGY 3 cut(s) 161, 281, 362
Cfr13I GGNCC 2 cut(s) 591, 980
CseI GACGC 3 cut(s) 117, 241, 439
Csp6I GTAC 2 cut(s) 938, 951
CviAII CATG 4 cut(s) 274, 662, 708, 846
CviQI GTAC 2 cut(s) 938, 951
DdeI CTNAG 6 cut(s) 16, 104, 519, 693, 768, 903
DinI GGCGCC 1 cut(s) 286
DpnI GATC 3 cut(s) 482, 627, 747
DpnII GATC 3 cut(s) 480, 625, 745
EaeI YGGCCR 3 cut(s) 159, 360, 946
EagI CGGCCG 2 cut(s) 159, 360
EciI GGCGGA 1 cut(s) 37
Ecl136II GAGCTC 2 cut(s) 15, 92
EclXI CGGCCG 2 cut(s) 159, 360
Eco130I CCWWGG 3 cut(s) 117, 629, 976
Eco24I GRGCYC 2 cut(s) 17, 94
Eco52I CGGCCG 2 cut(s) 159, 360
Eco53kI GAGCTC 2 cut(s) 15, 92
Eco91I GGTNACC 1 cut(s) 670
EcoICRI GAGCTC 2 cut(s) 15, 92
EcoO65I GGTNACC 1 cut(s) 670
EcoT14I CCWWGG 3 cut(s) 117, 629, 976
EcoT22I ATGCAT 1 cut(s) 847
EcoT38I GRGCYC 2 cut(s) 17, 94
EgeI GGCGCC 1 cut(s) 286
EheI GGCGCC 1 cut(s) 286
ErhI CCWWGG 3 cut(s) 117, 629, 976
Esp3I CGTCTC 1 cut(s) 217
FaeI CATG 4 cut(s) 277, 665, 711, 849
FalI AAGNNNNNCTT 2 cut(s) 927, 959
FaqI GGGAC 2 cut(s) 553, 633
FatI CATG 4 cut(s) 273, 661, 707, 845
FauNDI CATATG 2 cut(s) 820, 892
FbaI TGATCA 1 cut(s) 480
FblI GTMKAC 1 cut(s) 1042
Fnu4HI GCNGC 9 cut(s) 109, 112, 159, 311, 314, 317, 516, 557, 825
FokI GGATG 5 cut(s) 397, 407, 854, 881, 916
FriOI GRGCYC 2 cut(s) 17, 94
Fsp4HI GCNGC 9 cut(s) 109, 112, 159, 311, 314, 317, 516, 557, 825
FspBI CTAG 4 cut(s) 305, 390, 630, 1031
GlaI GCGC 4 cut(s) 115, 127, 157, 286
GluI GCNGC 9 cut(s) 109, 112, 159, 311, 314, 317, 516, 557, 825
GsuI CTGGAG 4 cut(s) 56, 341, 810, 975
HaeII RGCGCY 1 cut(s) 288
HaeIII GGCC 6 cut(s) 161, 174, 362, 593, 948, 981
HgaI GACGC 3 cut(s) 117, 241, 439
HhaI GCGC 4 cut(s) 116, 128, 158, 287
Hin1I GRCGYC 4 cut(s) 234, 252, 264, 285
Hin1II CATG 4 cut(s) 277, 665, 711, 849
Hin6I GCGC 4 cut(s) 114, 126, 156, 285
HinP1I GCGC 4 cut(s) 114, 126, 156, 285
HincII GTYRAC 2 cut(s) 241, 475
HindII GTYRAC 2 cut(s) 241, 475
HinfI GANTC 2 cut(s) 42, 148
HpaI GTTAAC 2 cut(s) 241, 475
HphI GGTGA 5 cut(s) 247, 361, 505, 709, 919
Hpy166II GTNNAC 4 cut(s) 241, 475, 496, 1043
Hpy188I TCNGA 6 cut(s) 19, 262, 333, 375, 756, 1067
Hpy188III TCNNGA 4 cut(s) 56, 73, 145, 529
Hpy8I GTNNAC 4 cut(s) 241, 475, 496, 1043
Hpy99I CGWCG 3 cut(s) 133, 236, 239
HpyAV CCTTC 6 cut(s) 434, 718, 860, 931, 1009, 1042
HpyCH4III ACNGT 2 cut(s) 9, 505
HpyCH4IV ACGT 2 cut(s) 234, 264
HpyCH4V TGCA 7 cut(s) 449, 665, 803, 845, 872, 890, 929
HpyF10VI GCNNNNNNNGC 8 cut(s) 132, 162, 171, 316, 800, 824, 855, 896
HpyF3I CTNAG 6 cut(s) 16, 104, 519, 693, 768, 903
HpySE526I ACGT 2 cut(s) 234, 264
Hsp92I GRCGYC 4 cut(s) 234, 252, 264, 285
Hsp92II CATG 4 cut(s) 277, 665, 711, 849
HspAI GCGC 4 cut(s) 114, 126, 156, 285
KasI GGCGCC 1 cut(s) 284
KroI GCCGGC 1 cut(s) 161
KroNI GCCGGC 1 cut(s) 163
Ksp22I TGATCA 1 cut(s) 480
KspAI GTTAAC 2 cut(s) 241, 475
Kzo9I GATC 3 cut(s) 480, 625, 745
LmnI GCTCC 3 cut(s) 89, 343, 791
Lsp1109I GCAGC 6 cut(s) 95, 322, 325, 328, 502, 811
LweI GCATC 5 cut(s) 10, 73, 832, 859, 938
MaeI CTAG 4 cut(s) 305, 390, 630, 1031
MaeII ACGT 2 cut(s) 234, 264
MaeIII GTNAC 4 cut(s) 253, 568, 670, 907
MalI GATC 3 cut(s) 482, 627, 747
MboI GATC 3 cut(s) 480, 625, 745
MboII GAAGA 1 cut(s) 208
MhlI GDGCHC 2 cut(s) 17, 94
MluCI AATT 4 cut(s) 354, 420, 444, 833
Mly113I GGCGCC 1 cut(s) 285
Mph1103I ATGCAT 1 cut(s) 847
MroNI GCCGGC 1 cut(s) 161
MseI TTAA 6 cut(s) 240, 405, 474, 699, 831, 860
MspA1I CMGCKG 1 cut(s) 319
MspCI CTTAAG 1 cut(s) 859
MspR9I CCNGG 3 cut(s) 249, 381, 538
Mva1269I GAATGC 1 cut(s) 750
MvnI CGCG 4 cut(s) 114, 128, 146, 158
MwoI GCNNNNNNNGC 8 cut(s) 132, 162, 171, 316, 800, 824, 855, 896
NaeI GCCGGC 1 cut(s) 163
NarI GGCGCC 1 cut(s) 285
NciI CCSGG 3 cut(s) 249, 381, 538
NdeI CATATG 2 cut(s) 820, 892
NdeII GATC 3 cut(s) 480, 625, 745
NgoMIV GCCGGC 1 cut(s) 161
NlaIII CATG 4 cut(s) 277, 665, 711, 849
NlaIV GGNNCC 3 cut(s) 286, 507, 982
NmeAIII GCCGAG 1 cut(s) 132
NmuCI GTSAC 2 cut(s) 253, 907
NruI TCGCGA 1 cut(s) 146
NsiI ATGCAT 1 cut(s) 847
NspI RCATGY 1 cut(s) 849
PaeI GCATGC 1 cut(s) 849
PaqCI CACCTGC 1 cut(s) 863
PcsI WCGNNNNNNNCGW 2 cut(s) 37, 946
PctI GAATGC 1 cut(s) 750
PdiI GCCGGC 1 cut(s) 163
PfeI GAWTC 2 cut(s) 42, 148
PflFI GACNNNGTC 1 cut(s) 7
PflMI CCANNNNNTGG 1 cut(s) 181
PkrI GCNGC 9 cut(s) 110, 113, 160, 312, 315, 318, 517, 558, 826
PluTI GGCGCC 1 cut(s) 288
Psp124BI GAGCTC 2 cut(s) 17, 94
PspEI GGTNACC 1 cut(s) 670
PspN4I GGNNCC 3 cut(s) 286, 507, 982
PspPI GGNCC 2 cut(s) 591, 980
PstNI CAGNNNCTG 2 cut(s) 181, 319
PsyI GACNNNGTC 1 cut(s) 7
PvuII CAGCTG 1 cut(s) 319
RruI TCGCGA 1 cut(s) 146
RsaI GTAC 2 cut(s) 939, 952
RsaNI GTAC 2 cut(s) 938, 951
SacI GAGCTC 2 cut(s) 17, 94
SaqAI TTAA 6 cut(s) 240, 405, 474, 699, 831, 860
SatI GCNGC 9 cut(s) 109, 112, 159, 311, 314, 317, 516, 557, 825
Sau3AI GATC 3 cut(s) 480, 625, 745
Sau96I GGNCC 2 cut(s) 591, 980
ScrFI CCNGG 3 cut(s) 249, 381, 538
SduI GDGCHC 2 cut(s) 17, 94
SfaNI GCATC 5 cut(s) 10, 73, 832, 859, 938
SfoI GGCGCC 1 cut(s) 286
SgrAI CRCCGGYG 1 cut(s) 281
SmlI CTYRAG 1 cut(s) 859
SmoI CTYRAG 1 cut(s) 859
SphI GCATGC 1 cut(s) 849
Sse9I AATT 4 cut(s) 354, 420, 444, 833
SsiI CCGC 6 cut(s) 48, 112, 158, 165, 556, 839
SspDI GGCGCC 1 cut(s) 284
SspMI CTAG 4 cut(s) 305, 390, 630, 1031
SstI GAGCTC 2 cut(s) 17, 94
StyD4I CCNGG 3 cut(s) 247, 379, 536
StyI CCWWGG 3 cut(s) 117, 629, 976
TaaI ACNGT 2 cut(s) 9, 505
TaiI ACGT 2 cut(s) 237, 267
TaqI TCGA 4 cut(s) 11, 40, 57, 546
TasI AATT 4 cut(s) 354, 420, 444, 833
TauI GCSGC 3 cut(s) 114, 161, 559
TfiI GAWTC 2 cut(s) 42, 148
Tru1I TTAA 6 cut(s) 240, 405, 474, 699, 831, 860
Tru9I TTAA 6 cut(s) 240, 405, 474, 699, 831, 860
TseFI GTSAC 2 cut(s) 253, 907
TseI GCWGC 6 cut(s) 108, 310, 313, 316, 515, 824
Tsp45I GTSAC 2 cut(s) 253, 907
TspDTI ATGAA 3 cut(s) 209, 215, 1051
TspGWI ACGGA 1 cut(s) 205
Tth111I GACNNNGTC 1 cut(s) 7
Van91I CCANNNNNTGG 1 cut(s) 181
Vha464I CTTAAG 1 cut(s) 859
XapI RAATTY 1 cut(s) 833
XceI RCATGY 1 cut(s) 849
XcmI CCANNNNNNNNNTGG 1 cut(s) 601
XmaJI CCTAGG 1 cut(s) 629
XmiI GTMKAC 1 cut(s) 1042
XspI CTAG 4 cut(s) 305, 390, 630, 1031
ZraI GACGTC 2 cut(s) 235, 265
Zsp2I ATGCAT 1 cut(s) 847
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.